Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CR3	30446	2023-04-23	2020-08-12	3.6	3.76	—	3.7	0.002	0.55	0.0	0.04	14.56	0.00	2.232	12.46	0.00	3.3	96.7	0.0	-3.24	0.61	0.75	1.93	3.7	0.003	0.88	0.0	0.04	16.74	0.00	2.172	16.93	0.42	3.4	96.6	0.0	0.98	2.01	0.60	0.72	1.15	15924	1968	8	0	0	0	0	logfile
✔	7P1J	13162	2023-04-20	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	7R88	24311	2023-04-21	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.003	0.58	0.0	0.04	15.10	0.00	2.222	6.59	0.25	4.4	95.6	0.0	1.28	1.34	0.71	0.88	2.75	10787	1368	4	0	0	0	0	logfile
✔	6SB3	10134	2023-04-28	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.98	0.00	2.104	13.24	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.005	0.68	0.0	0.05	15.97	0.00	2.036	17.49	0.63	7.7	92.3	0.0	-1.43	1.22	0.71	0.76	0.99	75712	9664	32	0	32	0	0	logfile
✘	7WoC	32648	2023-04-20	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.56	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4746	610	4	0	1	0	0	logfile
✔	7XQG	33395	2023-04-21	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	11.19	0.00	2.268	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.78	0.0	0.04	15.05	0.00	2.291	8.32	0.19	3.6	96.4	0.0	2.37	0.77	0.80	0.85	1.40	10206	1206	12	0	12	0	0	logfile
✔	6XJB	22205	2023-04-21	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.64	0.0	0.04	15.19	0.00	2.043	13.87	0.19	7.8	92.2	0.0	-1.33	1.82	0.88	0.85	2.02	10070	1277	1	0	0	0	0	logfile
✔	7TBZ	25802	2023-04-22	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.56	0.0	0.04	12.08	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.68	0.0	0.04	12.09	0.00	2.162	10.10	0.00	6.3	93.7	0.0	0.15	2.66	0.72	0.82	—	13275	1788	4	0	10	0	0	logfile
✔	7X13	32933	2023-04-25	2022-02-23	3.7	3.38	—	3.3	0.002	0.51	0.0	0.04	14.42	0.00	2.152	8.27	0.04	1.7	98.3	0.0	2.42	0.50	0.55	1.11	3.3	0.003	0.63	0.0	0.04	16.22	0.00	2.101	12.23	0.61	3.2	96.8	0.0	1.37	1.02	0.52	0.60	1.32	21248	2668	12	0	0	0	0	logfile
✔	8CW9	27024	2023-04-29	2022-05-18	3.46	2.48	—	2.2	0.002	0.67	0.0	0.05	13.48	0.01	2.196	3.46	1.25	5.7	94.1	0.1	-1.23	0.74	0.73	2.43	2.2	0.004	0.77	0.0	0.05	15.66	0.00	2.153	14.19	0.58	4.7	95.3	0.0	-0.36	1.51	0.77	0.76	1.93	20229	2658	18	0	3	0	0	logfile
✔	8DVR	27743	2023-04-20	2022-07-29	3.3	3.38	3.19	3.4	0.002	0.46	0.0	0.04	13.62	0.00	2.267	8.74	1.40	4.5	95.5	0.0	-2.25	0.67	0.75	1.81	3.4	0.003	0.59	0.0	0.04	15.74	0.00	2.266	10.10	0.35	6.1	93.9	0.0	0.14	0.57	0.71	0.82	2.11	5601	635	4	21	2	0	0	logfile
✔	6J30	9773	2023-04-19	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	8DPG	27634	2023-04-20	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.47	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.002	0.54	0.0	0.04	13.50	0.00	2.090	5.22	0.12	2.2	97.8	0.0	1.05	1.11	0.76	0.72	1.84	8162	1093	6	0	2	0	0	logfile
✔	7Y64	33633	2023-04-22	2022-06-18	2.9	2.25	2.85	2.1	0.002	0.58	0.0	0.04	12.47	0.00	2.139	5.05	0.19	2.5	97.5	0.0	0.58	0.76	0.77	3.26	2.1	0.004	0.60	0.0	0.04	15.65	0.00	2.186	5.00	2.31	3.8	96.2	0.0	0.75	0.39	0.79	0.81	2.89	9520	1218	6	0	0	0	0	logfile
✘	7VGS	31978	2023-04-23	2021-09-18	2.8	3.28	—	3.3	0.002	0.66	0.0	0.04	12.19	0.01	2.230	9.89	0.38	7.0	93.0	0.0	-1.16	0.67	0.75	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9700	1254	6	0	0	0	0	logfile
✔	7YES	33776	2023-04-23	2022-07-06	3.4	3.49	—	3.4	0.002	0.53	0.0	0.04	14.11	0.00	2.209	4.52	0.18	6.8	92.6	0.6	0.91	0.80	0.86	2.46	3.4	0.004	0.57	0.0	0.04	15.80	0.00	2.183	5.41	0.25	7.0	92.3	0.6	0.93	0.89	0.82	0.87	2.53	14679	1863	6	0	1	0	0	logfile
✘	7o85	12761	2023-04-28	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28525	3843	28	0	14	0	0	logfile
✔	7Q2Z	13786	2023-04-20	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.97	0.00	2.121	3.33	0.00	2.8	97.1	0.1	2.11	1.23	0.70	0.86	1.84	8258	902	4	46	0	0	0	logfile
✔	6UUS	20901	2023-04-21	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✘	7Y5G	33619	2023-04-20	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4736	604	4	0	6	0	0	logfile

• ← previous
• Page 6 of 372
• next →