Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SGF	25109	2023-11-15	2021-10-05	4.41	4.60	4.16	4.4	0.022	2.04	0.0	0.15	9.26	0.01	2.354	1.42	0.00	1.9	98.1	0.0	-0.03	0.77	0.70	—	4.4	0.004	0.99	0.0	0.05	12.96	0.00	2.105	21.42	0.00	8.6	91.4	0.0	-2.15	1.05	0.79	0.74	—	12078	1641	42	0	87	0	0	logfile
✔	6V22	21025	2023-11-22	2019-11-22	3.2	3.50	—	3.4	0.014	1.41	0.0	0.06	17.77	0.02	2.257	5.84	0.21	4.3	95.7	0.0	-3.73	0.73	0.86	3.42	3.4	0.004	0.55	0.0	0.04	16.13	0.00	2.127	7.99	0.15	3.9	96.1	0.0	0.48	1.56	0.73	0.87	3.25	37004	4380	16	0	100	0	0	logfile
✔	7E9H	31032	2023-11-16	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.04	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.003	0.70	0.0	0.04	14.89	0.00	2.095	14.69	0.54	4.7	95.3	0.0	-0.84	2.00	0.72	0.68	—	16847	2309	8	0	0	0	0	logfile
✔	7RZ7	24753	2023-11-19	2021-08-27	4.2	3.77	—	3.7	0.007	0.93	0.0	0.05	10.90	0.01	2.256	4.92	0.66	4.3	95.6	0.1	-4.36	0.64	0.77	—	3.6	0.003	0.61	0.0	0.04	12.21	0.00	2.042	11.47	0.00	3.8	96.2	0.0	-0.52	0.91	0.64	0.77	—	28054	3554	8	0	4	0	0	logfile
✔	7UKF	26579	2023-11-14	2022-04-01	3.02	3.32	3.06	3.3	0.004	0.61	0.0	0.04	11.50	0.00	2.290	9.17	0.00	2.3	97.7	0.0	1.20	0.58	0.83	3.02	3.3	0.004	0.54	0.0	0.04	14.31	0.00	2.159	9.11	0.24	3.3	96.7	0.0	1.79	0.30	0.57	0.84	2.25	8005	1036	5	0	5	0	0	logfile
✔	6WM3	21848	2023-11-17	2020-04-20	3.4	3.61	—	3.5	0.007	0.71	0.0	0.04	16.95	0.00	2.026	11.26	8.84	7.8	92.2	0.0	-2.80	0.76	0.82	2.00	3.5	0.004	0.68	0.0	0.04	16.95	0.00	2.050	10.13	0.41	5.3	94.7	0.0	0.10	0.53	0.77	0.85	1.75	69755	9210	39	0	9	0	0	logfile
✔	7L8W	23238	2023-11-16	2021-01-01	4.1	4.21	3.98	4.1	0.021	1.71	0.0	0.14	10.04	0.02	2.347	1.34	0.00	1.7	98.3	0.0	1.14	0.72	0.82	—	4.1	0.004	0.71	0.0	0.05	13.66	0.00	2.152	10.07	0.00	3.1	96.8	0.1	-0.13	1.39	0.73	0.82	—	15803	1714	22	0	298	0	0	logfile
✔	7oM0	12982	2023-11-18	2021-05-21	3.1	3.92	3.06	3.2	0.004	0.63	0.0	0.04	13.27	0.00	2.209	7.54	0.04	2.7	97.3	0.0	1.24	0.90	0.85	2.71	3.3	0.004	0.50	0.0	0.04	14.63	0.00	2.172	11.35	0.16	3.0	97.0	0.0	0.99	0.89	0.90	0.88	2.37	22042	2657	12	0	6	0	0	logfile
✔	6W6J	21557	2023-11-20	2020-03-17	3.2	3.50	—	3.4	0.007	0.89	0.0	0.05	15.32	0.01	1.459	11.27	0.82	12.4	87.5	0.2	-4.72	0.82	0.84	1.62	3.4	0.003	0.68	0.0	0.04	16.61	0.00	2.098	8.17	0.99	9.1	90.8	0.1	-1.15	1.29	0.84	0.87	1.49	29240	3725	13	0	38	0	0	logfile
✔	7UKD	26577	2023-11-14	2022-04-01	2.88	3.39	3.14	3.3	0.004	0.62	0.0	0.04	12.08	0.00	2.195	9.18	0.00	1.9	98.1	0.0	1.30	0.58	0.83	2.72	3.3	0.004	0.60	0.0	0.04	14.98	0.00	2.137	8.31	1.54	2.8	97.2	0.0	2.07	0.91	0.55	0.84	2.54	8000	1036	5	0	4	0	0	logfile
✔	7Ui0	26521	2023-11-17	2022-03-28	3.4	3.51	3.43	3.6	0.008	0.81	0.0	0.05	13.94	0.01	2.052	14.18	0.00	5.3	94.7	0.0	-1.38	0.81	0.82	2.16	3.6	0.004	0.63	0.0	0.04	15.79	0.00	2.121	11.79	0.29	3.9	96.1	0.0	-0.88	1.35	0.83	0.86	2.68	19203	2415	9	0	0	0	0	logfile
✔	7TZF	26208	2023-11-15	2022-02-15	2.4	2.00	2.20	2.3	0.010	0.53	0.0	0.04	14.56	0.00	2.252	4.74	1.43	1.0	99.0	0.0	-2.36	0.54	0.77	4.70	2.0	0.003	0.60	0.0	0.04	16.83	0.00	2.219	6.21	1.43	1.8	98.2	0.0	0.83	0.83	0.57	0.83	4.87	10342	1272	13	0	19	25	0	logfile
✔	7WK3	32557	2023-11-19	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.004	0.72	0.0	0.04	14.28	0.00	2.082	10.49	0.36	3.3	96.7	0.0	-0.16	1.11	0.79	0.79	1.77	24805	3162	3	0	0	0	0	logfile
✔	6W6G	21554	2023-11-19	2020-03-16	3.1	3.46	—	3.3	0.006	0.79	0.0	0.05	15.45	0.00	2.131	10.22	0.66	11.5	88.3	0.2	-4.32	0.84	0.86	2.18	3.3	0.005	0.73	0.0	0.05	16.61	0.00	2.124	8.55	1.01	10.4	89.5	0.1	-1.37	2.22	0.83	0.87	2.02	27581	3506	13	0	38	0	0	logfile
✔	6RWo	10044	2023-11-17	2019-06-05	3.05	3.20	3.05	3.2	0.013	0.82	0.0	0.05	17.06	0.01	1.994	2.29	4.10	3.3	96.7	0.0	-3.00	0.67	0.83	3.08	3.2	0.006	0.69	0.0	0.05	19.26	0.00	1.728	5.68	0.34	4.1	95.9	0.0	-0.13	0.54	0.73	0.85	3.14	18366	2076	26	86	16	6	0	logfile
✔	7XM1	33289	2023-11-14	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	3.9	0.003	0.56	0.0	0.04	18.87	0.00	2.214	4.30	0.31	3.3	96.7	0.0	2.60	0.65	0.74	0.83	1.49	60240	7380	101	0	60	0	0	logfile
✔	7L86	23223	2023-11-16	2020-12-31	3.4	3.54	3.36	3.5	0.023	1.70	0.0	0.14	9.63	0.02	2.361	1.29	0.00	1.5	98.5	0.0	0.96	0.73	0.84	4.17	3.5	0.003	0.61	0.0	0.04	14.38	0.00	2.193	6.14	0.27	2.1	97.9	0.0	0.31	1.21	0.72	0.85	3.03	15802	1686	47	0	323	0	0	logfile
✔	7TCP	25816	2023-11-16	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	7EEQ	31080	2023-11-21	2021-03-19	3.96	3.15	—	3.0	0.006	0.98	0.0	0.06	10.42	0.01	2.316	4.10	0.17	12.0	88.0	0.0	-4.80	0.52	0.74	2.63	3.0	0.004	0.71	0.0	0.04	13.64	0.00	2.187	9.87	0.17	9.6	90.4	0.0	-3.21	1.16	0.53	0.76	2.86	34260	4488	24	0	0	0	0	logfile
✔	6XSK	22302	2023-11-17	2020-07-15	3.85	4.41	3.93	4.2	0.006	1.06	0.0	0.07	12.91	0.01	2.271	4.44	0.37	2.1	97.9	0.0	0.19	0.83	0.83	1.60	4.2	0.005	0.73	0.0	0.04	14.84	0.00	2.090	13.35	0.53	3.4	96.6	0.0	0.26	1.63	0.84	0.85	1.85	17322	2163	27	0	36	0	0	logfile

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