Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T2E	25611	2023-09-27	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7C1D	30269	2023-09-27	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.63	0.0	0.05	14.86	0.00	2.265	16.18	2.08	14.6	85.4	0.0	-4.73	2.82	0.39	0.75	3.16	2034	306	6	0	0	0	0	logfile
✔	7QJW	14024	2023-09-28	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.63	0.0	0.05	15.65	0.00	2.366	4.13	1.01	2.7	97.3	0.0	-1.58	1.60	0.38	0.78	4.37	7032	450	6	0	0	0	3588	logfile
✔	7ELH	31183	2023-09-30	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	12.97	0.00	1.043	9.19	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.003	0.51	0.0	0.04	14.69	0.00	1.859	28.25	0.29	3.7	96.3	0.0	1.24	1.15	0.38	0.89	2.53	114995	13378	27	310	1	0	3098	logfile
✔	7XiZ	33213	2023-09-27	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	17.48	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.81	0.0	0.05	17.83	0.01	2.218	16.22	1.70	16.6	82.6	0.8	-3.61	1.54	0.37	0.74	1.40	2161	267	1	0	2	0	0	logfile
✔	6M7D	30129	2023-09-27	2020-03-18	2.9	2.82	—	2.8	0.010	1.03	0.0	0.07	13.84	0.00	2.157	15.48	0.58	2.4	97.6	0.0	-0.46	0.35	0.86	4.08	2.8	0.002	0.51	0.0	0.04	15.72	0.00	2.232	8.89	1.46	1.5	98.5	0.0	2.16	0.85	0.34	0.88	3.05	3280	412	2	6	0	0	0	logfile
✔	7ELL	31184	2023-09-29	2021-04-12	3.8	4.24	—	3.8	0.006	0.86	1.0	0.05	14.83	0.01	1.176	17.74	0.62	8.9	90.9	0.2	-2.13	0.35	0.86	1.77	3.8	0.005	0.77	0.0	0.05	15.99	0.00	2.030	12.91	0.40	4.8	95.1	0.1	-0.02	1.31	0.34	0.88	1.94	60584	7917	31	0	10	0	0	logfile
✔	7QKJ	14044	2023-09-28	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.005	0.79	0.0	0.05	15.54	0.00	2.135	10.82	0.25	7.9	92.1	0.0	-2.54	1.07	0.36	0.85	3.02	6888	900	12	0	0	0	0	logfile
✔	8JMT	36426	2023-09-27	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.65	0.0	0.04	16.13	0.00	2.238	11.67	0.00	4.0	96.0	0.0	1.51	1.16	0.33	0.61	0.92	1894	234	1	0	0	0	0	logfile
✔	8FUV	29481	2023-09-30	2023-01-18	3.1	3.21	2.89	3.1	0.003	0.59	0.0	0.04	12.83	0.00	2.169	5.52	0.00	5.6	94.4	0.0	-0.17	0.36	0.86	3.59	3.1	0.005	0.64	0.0	0.05	14.38	0.01	2.155	6.80	0.28	5.5	94.0	0.4	-0.61	1.17	0.37	0.89	3.77	10170	1368	7	0	0	0	0	logfile
✔	8Q7P	18228	2023-09-27	2023-08-16	3.28	3.24	3.20	3.3	0.011	1.82	0.0	0.09	11.62	0.01	2.479	0.00	0.00	1.4	98.6	0.0	-1.91	0.36	0.78	5.16	3.3	0.006	0.69	0.0	0.05	16.90	0.00	2.209	7.08	1.79	1.6	98.4	0.0	-2.12	1.47	0.42	0.87	5.25	3402	450	6	0	0	0	0	logfile
✔	6TJo	10512	2023-09-27	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.003	0.74	0.0	0.05	12.71	0.00	2.308	6.81	0.00	5.4	94.6	0.0	-3.46	1.41	0.34	0.75	4.46	2439	321	3	0	0	0	0	logfile
✔	7N5F	24188	2023-09-27	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	6HD5	0201	2023-09-29	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7YNG	33961	2023-09-27	2022-07-30	3.1	3.08	2.33	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.002	0.51	0.0	0.05	14.89	0.00	2.286	6.32	0.00	4.9	95.1	0.0	-1.98	0.36	0.34	0.74	3.39	2628	378	6	0	0	0	0	logfile
✔	6QJH	4563	2023-09-27	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.65	0.0	0.05	15.68	0.00	2.258	4.48	0.00	2.3	97.7	0.0	-2.63	1.57	0.30	0.77	2.79	1302	177	3	0	0	0	0	logfile
✔	5A63	3061	2023-09-30	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	19.07	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.76	0.0	0.04	17.76	0.00	2.217	12.14	1.05	5.5	94.1	0.3	0.06	3.24	0.62	0.82	1.80	10003	1223	13	0	22	0	0	logfile
✔	7ZH7	14726	2023-09-30	2022-04-05	3.3	3.52	2.56	3.5	0.003	0.74	0.0	0.05	11.41	0.01	2.267	3.63	0.00	2.7	97.3	0.0	-4.42	0.36	0.78	5.27	3.5	0.006	0.70	0.0	0.05	14.83	0.00	1.932	8.64	0.18	12.3	87.7	0.0	-4.53	1.32	0.40	0.82	5.42	11520	760	10	0	0	0	5390	logfile
✔	5U1D	8482	2023-09-28	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.004	0.78	0.0	0.04	15.89	0.00	2.058	14.10	0.51	4.7	95.2	0.1	0.93	1.07	0.52	0.75	1.63	7815	1168	3	0	0	0	0	logfile
✔	8H9N	34574	2023-09-27	2022-10-25	3.56	3.82	3.61	3.7	0.007	0.88	0.0	0.05	15.25	0.01	2.178	14.62	0.00	5.6	94.4	0.0	-2.28	0.36	0.77	1.69	3.7	0.004	0.77	0.0	0.04	17.66	0.01	2.263	10.59	1.41	5.1	94.9	0.0	2.40	1.17	0.37	0.77	1.69	3381	421	3	0	0	0	0	logfile

• ← previous
• Page 6 of 206
• next →