Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DU8	8912	2023-04-22	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.57	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.004	0.82	0.0	0.05	15.41	0.00	2.067	12.36	0.07	9.7	90.3	0.0	-1.96	0.58	0.41	0.62	2.19	13380	1684	8	0	4	0	0	logfile
✔	5X0M	6698	2023-04-21	2017-01-21	3.8	3.85	—	3.9	0.009	1.41	2.0	0.06	21.10	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	3.8	0.004	0.95	0.0	0.05	17.44	0.01	2.171	14.98	0.28	10.9	88.4	0.8	-1.15	1.82	0.53	0.75	1.40	10654	1323	8	0	20	0	0	logfile
✔	7MDX	23783	2023-04-21	2021-04-06	3.8	4.16	—	4.1	0.004	0.70	1.0	0.05	15.48	0.01	2.228	10.45	0.10	8.4	91.6	0.0	-1.27	0.39	0.72	0.93	4.1	0.003	0.78	0.0	0.05	17.54	0.00	2.075	13.98	0.59	9.2	90.8	0.1	-1.35	0.51	0.39	0.72	0.68	9513	1234	5	0	4	0	0	logfile
✔	6CRZ	7577	2023-04-27	2018-03-19	3.3	3.42	3.35	4.5	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.004	0.75	0.0	0.05	13.80	0.00	2.093	12.74	0.58	6.4	93.6	0.0	-1.78	1.50	0.62	0.59	0.81	25909	3205	25	0	66	0	0	logfile
✔	8GWE	34310	2023-04-26	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.89	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	6QPi	4614	2023-04-19	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	7DRT	30827	2023-04-20	2020-12-29	2.2	2.32	—	2.3	0.011	1.32	9.0	0.09	13.05	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.69	0.0	0.04	17.16	0.01	2.248	10.87	5.31	6.3	93.6	0.1	-0.26	1.11	0.64	0.77	2.68	6849	830	7	0	7	10	0	logfile
✘	7CQ7	30438	2023-04-23	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.33	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13810	1766	8	0	9	0	0	logfile
✔	7FFN	31569	2023-04-20	2021-07-23	3.0	3.15	—	3.1	0.007	0.95	0.0	0.06	9.73	0.01	1.924	5.72	0.53	6.6	93.3	0.1	-3.00	0.39	0.80	3.34	3.1	0.004	0.70	0.0	0.05	14.57	0.01	2.170	8.25	2.55	5.8	94.2	0.0	-0.56	2.02	0.41	0.88	3.17	8589	1112	6	0	1	0	0	logfile
✔	7WQ3	32698	2023-04-21	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	8.04	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.003	0.62	0.0	0.04	15.73	0.00	2.165	7.11	2.94	2.4	97.6	0.0	0.81	1.89	0.64	0.82	3.09	9209	1160	7	0	5	0	0	logfile
✔	7DNH	30783	2023-04-26	2020-12-09	3.64	4.22	—	4.2	0.008	1.08	0.0	0.06	15.01	0.01	1.791	6.16	0.78	9.6	90.2	0.2	-4.48	0.39	0.79	2.34	4.2	0.005	0.80	0.0	0.05	16.29	0.01	2.142	15.00	0.66	9.0	91.0	0.0	-2.66	1.31	0.38	0.79	2.02	21788	2762	7	0	0	0	0	logfile
✘	7RL5	24516	2023-04-27	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	7K8A	22724	2023-04-21	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	8HiZ	34830	2023-04-20	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	15.48	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.62	0.0	0.04	16.36	0.00	2.104	13.25	0.30	3.9	96.1	0.0	0.78	1.04	0.40	0.80	1.85	3274	416	1	0	1	0	0	logfile
✔	8B70	15894	2023-04-21	2022-09-28	3.3	2.85	3.11	3.3	0.011	1.45	0.0	0.06	15.75	0.00	2.148	8.20	0.84	4.8	95.2	0.0	1.55	0.40	0.68	1.87	3.2	0.003	0.76	0.0	0.04	16.60	0.00	2.223	7.47	0.00	3.9	96.1	0.0	1.50	0.93	0.61	0.86	1.56	9258	1144	4	0	12	0	0	logfile
✔	7RL0	24512	2023-04-27	2021-07-22	2.8	2.88	—	2.9	0.014	2.04	48.0	0.11	14.56	0.02	1.912	0.47	1.08	2.5	97.3	0.2	-1.35	0.40	0.48	2.19	2.9	0.009	0.80	0.0	0.05	17.05	0.01	1.762	12.73	2.68	3.8	96.0	0.2	0.07	1.16	0.52	0.69	2.15	106080	6708	24	0	48	0	52716	logfile
✔	7FBi	31515	2023-04-20	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.005	0.86	0.0	0.05	16.65	0.00	2.125	18.48	0.81	14.3	85.7	0.0	-3.69	0.65	0.41	0.79	1.98	7777	1005	5	0	0	0	0	logfile
✔	6X0V	21985	2023-04-19	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7S1Y	24812	2023-04-20	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	6TZ2	20587	2023-04-23	2019-08-09	3.5	3.68	—	3.6	0.009	0.95	0.0	0.05	11.67	0.01	2.073	5.14	0.47	5.3	94.6	0.1	-3.55	0.40	0.85	3.02	3.6	0.003	0.61	0.0	0.04	15.42	0.00	1.862	10.42	0.60	4.2	95.8	0.0	-0.02	0.69	0.41	0.86	2.08	15608	1709	6	90	4	0	0	logfile

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