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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DU8 | 8912 | 2023-04-22 | 2018-06-20 | 3.11 | 3.84 | — | 3.8 | 0.007 | 1.14 | 0.0 | 0.08 | 12.57 | 0.01 | 2.046 | 7.99 | 0.89 | 8.8 | 91.2 | 0.0 | -4.81 | 0.39 | 0.59 | 3.01 | 3.8 | 0.004 | 0.82 | 0.0 | 0.05 | 15.41 | 0.00 | 2.067 | 12.36 | 0.07 | 9.7 | 90.3 | 0.0 | -1.96 | 0.58 | 0.41 | 0.62 | 2.19 | 13380 | 1684 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2023-04-21 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.009 | 1.41 | 2.0 | 0.06 | 21.10 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.95 | 0.0 | 0.05 | 17.44 | 0.01 | 2.171 | 14.98 | 0.28 | 10.9 | 88.4 | 0.8 | -1.15 | 1.82 | 0.53 | 0.75 | 1.40 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7MDX | 23783 | 2023-04-21 | 2021-04-06 | 3.8 | 4.16 | — | 4.1 | 0.004 | 0.70 | 1.0 | 0.05 | 15.48 | 0.01 | 2.228 | 10.45 | 0.10 | 8.4 | 91.6 | 0.0 | -1.27 | 0.39 | 0.72 | 0.93 | 4.1 | 0.003 | 0.78 | 0.0 | 0.05 | 17.54 | 0.00 | 2.075 | 13.98 | 0.59 | 9.2 | 90.8 | 0.1 | -1.35 | 0.51 | 0.39 | 0.72 | 0.68 | 9513 | 1234 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6CRZ | 7577 | 2023-04-27 | 2018-03-19 | 3.3 | 3.42 | 3.35 | 4.5 | 0.007 | 1.01 | 0.0 | 0.06 | 9.26 | 0.01 | 2.254 | 6.77 | 0.04 | 7.8 | 92.2 | 0.0 | -4.10 | 0.39 | 0.17 | 0.01 | 3.3 | 0.004 | 0.75 | 0.0 | 0.05 | 13.80 | 0.00 | 2.093 | 12.74 | 0.58 | 6.4 | 93.6 | 0.0 | -1.78 | 1.50 | 0.62 | 0.59 | 0.81 | 25909 | 3205 | 25 | 0 | 66 | 0 | 0 | logfile |
✔ | 8GWE | 34310 | 2023-04-26 | 2022-09-16 | 2.66 | 3.19 | 2.77 | 16.0 | 0.009 | 0.97 | 5.0 | 0.06 | 17.61 | 0.01 | 1.065 | 13.66 | 5.00 | 8.4 | 91.2 | 0.3 | -1.93 | 0.39 | 0.09 | 0.45 | 10.1 | 0.003 | 0.74 | 0.0 | 0.04 | 17.58 | 0.00 | 1.950 | 15.89 | 3.34 | 8.5 | 91.3 | 0.2 | -1.91 | 1.11 | 0.44 | 0.22 | 0.12 | 22040 | 2668 | 15 | 56 | 10 | 1 | 0 | logfile |
✔ | 6QPi | 4614 | 2023-04-19 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DRT | 30827 | 2023-04-20 | 2020-12-29 | 2.2 | 2.32 | — | 2.3 | 0.011 | 1.32 | 9.0 | 0.09 | 13.05 | 0.01 | 2.064 | 5.88 | 2.38 | 5.4 | 94.1 | 0.5 | -0.76 | 0.39 | 0.58 | 3.02 | 2.3 | 0.003 | 0.69 | 0.0 | 0.04 | 17.16 | 0.01 | 2.248 | 10.87 | 5.31 | 6.3 | 93.6 | 0.1 | -0.26 | 1.11 | 0.64 | 0.77 | 2.68 | 6849 | 830 | 7 | 0 | 7 | 10 | 0 | logfile |
✘ | 7CQ7 | 30438 | 2023-04-23 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.33 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✔ | 7FFN | 31569 | 2023-04-20 | 2021-07-23 | 3.0 | 3.15 | — | 3.1 | 0.007 | 0.95 | 0.0 | 0.06 | 9.73 | 0.01 | 1.924 | 5.72 | 0.53 | 6.6 | 93.3 | 0.1 | -3.00 | 0.39 | 0.80 | 3.34 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 14.57 | 0.01 | 2.170 | 8.25 | 2.55 | 5.8 | 94.2 | 0.0 | -0.56 | 2.02 | 0.41 | 0.88 | 3.17 | 8589 | 1112 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WQ3 | 32698 | 2023-04-21 | 2022-01-24 | 2.7 | 2.90 | — | 3.2 | 0.011 | 0.72 | 0.0 | 0.06 | 8.04 | 0.00 | 2.189 | 5.16 | 0.40 | 1.0 | 99.0 | 0.0 | -1.34 | 0.39 | 0.47 | 0.48 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.73 | 0.00 | 2.165 | 7.11 | 2.94 | 2.4 | 97.6 | 0.0 | 0.81 | 1.89 | 0.64 | 0.82 | 3.09 | 9209 | 1160 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 7DNH | 30783 | 2023-04-26 | 2020-12-09 | 3.64 | 4.22 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 15.01 | 0.01 | 1.791 | 6.16 | 0.78 | 9.6 | 90.2 | 0.2 | -4.48 | 0.39 | 0.79 | 2.34 | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 16.29 | 0.01 | 2.142 | 15.00 | 0.66 | 9.0 | 91.0 | 0.0 | -2.66 | 1.31 | 0.38 | 0.79 | 2.02 | 21788 | 2762 | 7 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RL5 | 24516 | 2023-04-27 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✔ | 7K8A | 22724 | 2023-04-21 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.86 | 0.01 | 2.225 | 15.74 | 0.34 | 4.6 | 95.3 | 0.1 | -0.56 | 0.46 | 0.42 | 0.55 | 0.22 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HiZ | 34830 | 2023-04-20 | 2022-11-22 | 3.08 | 3.26 | 2.97 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 15.48 | 0.00 | 2.324 | 14.33 | 0.30 | 2.9 | 97.1 | 0.0 | 1.51 | 0.40 | 0.77 | 2.44 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 16.36 | 0.00 | 2.104 | 13.25 | 0.30 | 3.9 | 96.1 | 0.0 | 0.78 | 1.04 | 0.40 | 0.80 | 1.85 | 3274 | 416 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8B70 | 15894 | 2023-04-21 | 2022-09-28 | 3.3 | 2.85 | 3.11 | 3.3 | 0.011 | 1.45 | 0.0 | 0.06 | 15.75 | 0.00 | 2.148 | 8.20 | 0.84 | 4.8 | 95.2 | 0.0 | 1.55 | 0.40 | 0.68 | 1.87 | 3.2 | 0.003 | 0.76 | 0.0 | 0.04 | 16.60 | 0.00 | 2.223 | 7.47 | 0.00 | 3.9 | 96.1 | 0.0 | 1.50 | 0.93 | 0.61 | 0.86 | 1.56 | 9258 | 1144 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 7RL0 | 24512 | 2023-04-27 | 2021-07-22 | 2.8 | 2.88 | — | 2.9 | 0.014 | 2.04 | 48.0 | 0.11 | 14.56 | 0.02 | 1.912 | 0.47 | 1.08 | 2.5 | 97.3 | 0.2 | -1.35 | 0.40 | 0.48 | 2.19 | 2.9 | 0.009 | 0.80 | 0.0 | 0.05 | 17.05 | 0.01 | 1.762 | 12.73 | 2.68 | 3.8 | 96.0 | 0.2 | 0.07 | 1.16 | 0.52 | 0.69 | 2.15 | 106080 | 6708 | 24 | 0 | 48 | 0 | 52716 | logfile |
✔ | 7FBi | 31515 | 2023-04-20 | 2021-07-10 | 3.9 | 4.51 | — | 4.4 | 0.007 | 1.18 | 3.0 | 0.07 | 15.51 | 0.01 | 2.095 | 10.67 | 0.35 | 14.6 | 85.3 | 0.1 | -5.16 | 0.40 | 0.79 | 1.90 | 4.4 | 0.005 | 0.86 | 0.0 | 0.05 | 16.65 | 0.00 | 2.125 | 18.48 | 0.81 | 14.3 | 85.7 | 0.0 | -3.69 | 0.65 | 0.41 | 0.79 | 1.98 | 7777 | 1005 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X0V | 21985 | 2023-04-19 | 2020-05-17 | 4.5 | 4.37 | — | 4.4 | 0.003 | 0.62 | 1.0 | 0.04 | 11.58 | 0.00 | 2.285 | 15.16 | 4.48 | 3.5 | 96.0 | 0.5 | -2.45 | 0.40 | 0.74 | — | 4.4 | 0.002 | 0.49 | 0.0 | 0.04 | 12.98 | 0.00 | 2.224 | 17.83 | 0.00 | 5.0 | 95.0 | 0.0 | 2.29 | 1.20 | 0.40 | 0.76 | — | 1384 | 211 | 4 | 0 | 0 | 0 | 62 | logfile |
✔ | 7S1Y | 24812 | 2023-04-20 | 2021-09-02 | 3.6 | 3.90 | — | 3.9 | 0.005 | 0.77 | 2.0 | 0.04 | 12.89 | 0.01 | 1.566 | 12.97 | 0.00 | 7.2 | 92.6 | 0.2 | -0.33 | 0.40 | 0.55 | 0.33 | 3.9 | 0.003 | 0.72 | 2.0 | 0.04 | 14.86 | 0.00 | 2.189 | 13.61 | 0.52 | 6.9 | 92.9 | 0.2 | -0.45 | 0.58 | 0.51 | 0.64 | 0.51 | 6580 | 948 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6TZ2 | 20587 | 2023-04-23 | 2019-08-09 | 3.5 | 3.68 | — | 3.6 | 0.009 | 0.95 | 0.0 | 0.05 | 11.67 | 0.01 | 2.073 | 5.14 | 0.47 | 5.3 | 94.6 | 0.1 | -3.55 | 0.40 | 0.85 | 3.02 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.42 | 0.00 | 1.862 | 10.42 | 0.60 | 4.2 | 95.8 | 0.0 | -0.02 | 0.69 | 0.41 | 0.86 | 2.08 | 15608 | 1709 | 6 | 90 | 4 | 0 | 0 | logfile |