Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JLX	22383	2023-09-27	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6KRD	0756	2023-09-30	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.67	0.0	0.04	11.93	0.00	2.014	12.31	0.01	3.2	96.7	0.1	0.08	1.78	0.62	0.58	—	61005	8006	16	0	0	0	0	logfile
✔	7U14	26277	2023-09-27	2022-02-19	4.5	4.22	—	4.6	0.006	0.94	0.0	0.07	16.90	0.00	2.369	21.08	6.30	10.5	89.5	0.0	-3.07	0.30	0.52	—	4.4	0.006	1.06	0.0	0.07	14.10	0.01	2.129	21.22	0.00	16.3	83.7	0.0	-4.33	1.63	0.35	0.64	—	3456	405	6	0	12	0	0	logfile
✔	7D4G	30573	2023-09-27	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.47	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.004	0.90	0.0	0.05	15.16	0.01	2.196	21.81	1.39	12.3	87.4	0.2	-2.19	3.65	0.65	0.71	1.77	3925	502	3	0	0	0	0	logfile
✔	8DH9	27433	2023-09-30	2022-06-25	4.5	3.05	4.86	4.5	0.003	0.65	0.0	0.04	12.03	0.00	2.073	13.96	0.08	2.8	96.9	0.2	0.38	0.65	0.52	—	2.3	0.003	0.83	0.0	0.05	12.65	0.01	2.093	17.38	0.00	5.1	94.8	0.1	-1.12	1.24	0.69	0.61	—	10229	1281	4	0	0	0	0	logfile
✔	8G3H	29699	2023-09-28	2023-02-07	3.6	3.80	3.20	3.8	0.016	2.32	9.0	0.26	17.25	0.02	2.228	13.55	4.37	8.7	91.3	0.0	-4.03	0.59	0.52	0.65	3.8	0.004	1.12	0.0	0.09	17.50	0.01	2.020	21.08	0.45	6.6	93.4	0.0	-1.71	2.58	0.62	0.56	0.74	6541	841	1	0	2	0	0	logfile
✔	7SK6	25174	2023-09-29	2021-10-19	4.0	4.42	—	4.1	0.018	1.92	2.0	0.11	13.16	0.01	2.462	0.11	0.76	4.2	94.0	1.8	0.35	0.52	0.52	—	4.1	0.003	0.58	0.0	0.04	14.77	0.00	2.131	14.34	0.19	4.2	95.8	0.0	0.54	1.46	0.64	0.71	—	9144	585	4	0	0	0	4462	logfile
✔	7Ui9	26542	2023-09-30	2022-03-28	3.3	4.81	3.23	2.8	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.75	0.06	1.9	98.0	0.1	0.62	0.59	0.52	0.82	2.8	0.002	0.60	0.0	0.04	14.79	0.00	2.095	10.75	0.08	2.6	97.4	0.0	1.58	0.50	0.81	0.79	0.66	63137	7857	33	0	0	0	0	logfile
✔	8BC1	15959	2023-09-29	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.265	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.004	0.81	0.0	0.04	15.72	0.01	2.131	15.98	2.25	4.8	95.2	0.0	0.67	1.04	0.40	0.54	1.03	8684	1054	4	0	6	0	0	logfile
✔	7V4J	31713	2023-09-29	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.003	0.73	0.0	0.05	16.29	0.01	2.111	19.55	0.28	6.6	93.4	0.0	-1.29	0.74	0.62	0.57	1.18	9850	1275	5	0	0	0	0	logfile
✔	7ZKY	14771	2023-09-28	2022-04-13	2.56	2.64	—	2.8	0.013	2.00	0.0	0.10	15.17	0.01	2.509	1.92	0.00	1.9	98.1	0.0	-3.47	0.26	0.53	3.35	2.7	0.006	0.83	0.0	0.04	18.07	0.00	2.046	12.61	2.71	8.6	91.4	0.0	-3.83	1.76	0.51	0.85	4.81	5238	642	12	0	0	0	0	logfile
✘	7EQ9	31256	2023-09-30	2021-04-30	3.3	3.70	3.42	3.6	0.002	0.47	0.0	0.04	15.65	0.00	2.267	3.70	0.00	3.3	96.7	0.0	1.85	0.60	0.53	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62520	7620	60	0	0	0	0	logfile
✔	8DRo	27679	2023-09-28	2022-07-21	4.06	4.13	4.38	4.1	0.004	0.96	0.0	0.05	15.27	0.01	2.265	14.83	0.40	7.3	92.7	0.0	-3.39	0.46	0.53	—	4.1	0.003	0.83	0.0	0.05	13.69	0.01	2.116	23.12	0.00	9.9	90.1	0.0	-2.68	2.67	0.46	0.53	—	6642	814	2	0	0	0	0	logfile
✘	7PiJ	13438	2023-09-28	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✔	6W2E	21526	2023-09-30	2020-03-05	4.4	4.45	—	4.4	0.006	1.04	1.0	0.06	10.30	0.01	1.618	7.99	0.68	4.5	95.1	0.4	-2.37	0.33	0.53	—	4.4	0.004	0.82	0.0	0.05	13.54	0.01	2.053	16.84	0.07	6.5	93.4	0.1	-1.20	1.37	0.40	0.75	—	62525	7943	19	0	0	0	0	logfile
✔	7URM	26714	2023-09-27	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.80	0.01	1.988	29.25	0.00	0.0	0.0	0.0	—	1.68	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	8iBN	35344	2023-09-29	2023-02-10	3.03	3.55	3.13	3.5	0.007	0.99	0.0	0.06	13.66	0.00	2.296	8.00	0.00	4.0	96.0	0.0	-1.98	0.60	0.53	0.83	3.5	0.003	0.62	0.0	0.05	15.79	0.00	2.053	15.49	0.45	4.1	95.9	0.0	-0.82	1.18	0.62	0.57	0.91	8940	1224	8	0	8	0	0	logfile
✔	6XHJ	22187	2023-09-30	2020-06-18	3.62	4.10	—	4.0	0.014	1.38	18.0	0.08	13.47	0.01	2.225	3.12	0.00	3.5	96.5	0.0	-2.59	0.61	0.53	0.86	4.0	0.002	0.63	0.0	0.04	15.79	0.00	2.079	4.93	0.20	1.4	98.6	0.0	0.51	2.45	0.75	0.75	1.05	60624	8514	18	0	36	0	0	logfile
✔	6DZW	8941	2023-09-28	2018-07-05	4.3	4.31	5.22	4.9	0.004	0.87	0.0	0.09	13.54	0.01	2.052	3.87	0.36	3.2	96.8	0.0	-4.99	0.45	0.53	—	5.0	0.003	0.74	0.0	0.04	13.38	0.00	2.157	19.66	0.12	5.0	95.0	0.0	-1.29	1.77	0.48	0.61	—	7829	988	6	0	4	0	0	logfile
✔	7LGM	23327	2023-09-30	2021-01-20	4.4	4.58	4.39	4.5	0.018	1.88	0.0	0.10	9.93	0.01	2.398	2.68	0.00	7.0	93.0	0.0	-1.52	0.65	0.53	—	4.5	0.003	0.83	0.0	0.05	12.35	0.01	2.187	14.90	0.00	11.4	88.5	0.1	-2.05	2.73	0.73	0.69	—	10954	1438	4	0	2	0	0	logfile

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