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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7U6V | 26381 | 2024-03-16 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✔ | 6RUo | 10007 | 2024-03-25 | 2019-05-28 | 3.5 | 3.56 | — | 4.0 | 0.007 | 1.05 | 0.0 | 0.06 | 13.25 | 0.01 | 2.170 | 7.99 | 0.40 | 10.5 | 89.4 | 0.1 | -4.99 | 0.53 | 0.29 | 0.05 | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 17.43 | 0.00 | 2.067 | 17.49 | 2.27 | 7.0 | 93.0 | 0.0 | -2.45 | 2.40 | 0.67 | 0.59 | 0.54 | 50792 | 6086 | 26 | 93 | 8 | 0 | 0 | logfile |
✔ | 8CR2 | 16802 | 2024-03-11 | 2023-03-07 | 4.2 | 4.42 | 4.19 | 5.1 | 0.004 | 1.07 | 1.0 | 0.06 | 13.24 | 0.01 | 1.914 | 20.12 | 0.00 | 5.8 | 94.2 | 0.0 | -3.18 | 0.41 | 0.29 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.71 | 0.00 | 2.170 | 16.14 | 0.00 | 3.1 | 96.9 | 0.0 | 0.23 | 2.06 | 0.64 | 0.67 | — | 6838 | 855 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XRE | 22294 | 2024-03-15 | 2020-07-12 | 4.6 | 7.52 | — | 4.5 | 0.011 | 1.16 | 1.0 | 0.07 | 10.73 | 0.01 | 0.771 | 5.15 | 0.24 | 7.9 | 91.5 | 0.6 | -3.72 | 0.62 | 0.29 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.04 | 12.04 | 0.00 | 1.856 | 15.39 | 0.00 | 13.0 | 87.0 | 0.0 | -2.87 | 0.92 | 0.85 | 0.65 | — | 68542 | 4289 | 18 | 0 | 9 | 0 | 34248 | logfile |
✔ | 7EG9 | 31109 | 2024-03-18 | 2021-03-24 | 3.7 | 4.62 | — | 3.7 | 0.008 | 1.15 | 54.0 | 0.08 | 16.44 | 0.01 | 1.514 | 21.01 | 4.37 | 6.7 | 92.6 | 0.7 | -3.68 | 0.58 | 0.30 | 0.60 | 3.6 | 0.006 | 0.89 | 3.0 | 0.04 | 17.09 | 0.01 | 1.837 | 19.69 | 1.92 | 6.5 | 93.4 | 0.1 | -0.85 | 1.38 | 0.79 | 0.70 | 0.71 | 84318 | 10176 | 49 | 142 | 11 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2024-03-18 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.005 | 1.06 | 2.0 | 0.05 | 13.91 | 0.01 | 2.083 | 35.87 | 0.00 | 16.6 | 82.5 | 0.9 | -3.94 | 4.20 | 0.34 | 0.59 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKC | 12437 | 2024-03-20 | 2021-02-17 | 4.46 | 4.76 | — | 4.6 | 0.004 | 0.72 | 0.0 | 0.04 | 14.45 | 0.01 | 1.795 | 9.79 | 0.25 | 4.3 | 95.7 | 0.1 | -0.76 | 0.51 | 0.30 | — | 4.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.70 | 0.00 | 1.890 | 17.89 | 0.00 | 6.2 | 93.8 | 0.0 | -0.76 | 1.91 | 0.63 | 0.51 | — | 28788 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 5G2X | 3331 | 2024-03-17 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 21.03 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.007 | 1.02 | 0.0 | 0.05 | 25.19 | 0.01 | 1.900 | 45.40 | 4.54 | 22.7 | 76.1 | 1.3 | -5.20 | 2.37 | 0.80 | 0.67 | 0.25 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 8SPo | 40680 | 2024-03-21 | 2023-05-03 | 2.98 | 2.34 | 3.17 | 2.1 | 0.004 | 0.60 | 0.0 | 0.26 | 18.84 | 0.00 | 0.334 | 11.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 0.46 | 0.30 | 0.19 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 18.88 | 0.00 | 1.817 | 12.21 | 2.22 | 6.6 | 93.4 | 0.0 | -1.13 | 1.34 | 0.57 | 0.49 | 1.24 | 31307 | 3428 | 22 | 154 | 6 | 0 | 0 | logfile |
✔ | 7Q1Z | 13776 | 2024-03-19 | 2021-10-22 | 3.4 | 2.41 | — | 4.0 | 0.004 | 0.61 | 0.0 | 0.04 | 12.72 | 0.00 | 2.074 | 6.27 | 0.04 | 2.2 | 97.8 | 0.0 | 0.60 | 0.48 | 0.31 | -0.02 | 2.2 | 0.004 | 0.74 | 0.0 | 0.05 | 15.15 | 0.00 | 2.096 | 11.53 | 2.35 | 3.1 | 96.9 | 0.0 | -0.07 | 1.57 | 0.74 | 0.74 | 1.29 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✘ | 7JMH | 22394 | 2024-03-14 | 2020-07-31 | 4.5 | 5.68 | — | 4.4 | 0.005 | 1.02 | 0.0 | 0.05 | 10.48 | 0.01 | 1.373 | 9.43 | 0.46 | 11.7 | 88.2 | 0.1 | -4.60 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 6CS1 | 7579 | 2024-03-20 | 2018-03-19 | 4.6 | 4.79 | 4.84 | 6.8 | 0.006 | 0.92 | 0.0 | 0.06 | 13.39 | 0.01 | 2.229 | 7.26 | 0.00 | 7.2 | 92.8 | 0.0 | -4.20 | 0.61 | 0.31 | — | 4.6 | 0.004 | 0.84 | 0.0 | 0.05 | 11.48 | 0.01 | 1.983 | 23.93 | 0.00 | 9.1 | 90.9 | 0.0 | -2.58 | 1.88 | 0.71 | 0.57 | — | 25995 | 3202 | 27 | 0 | 75 | 0 | 0 | logfile |
✔ | 7Ao8 | 11837 | 2024-03-15 | 2020-10-14 | 4.5 | 5.23 | 4.51 | 3.6 | 0.011 | 1.51 | 8.0 | 0.26 | 17.19 | 0.01 | 1.219 | 8.80 | 4.18 | 6.9 | 92.5 | 0.6 | -3.46 | 0.62 | 0.31 | — | 3.7 | 0.004 | 0.80 | 0.0 | 0.04 | 14.37 | 0.00 | 1.815 | 29.49 | 0.00 | 7.2 | 92.8 | 0.0 | -1.40 | 2.67 | 0.85 | 0.74 | — | 10905 | 1350 | 9 | 0 | 8 | 0 | 0 | logfile |
✘ | 7JMJ | 22396 | 2024-03-14 | 2020-07-31 | 4.5 | 5.51 | — | 4.3 | 0.007 | 1.08 | 0.0 | 0.05 | 10.58 | 0.01 | 1.373 | 9.90 | 0.62 | 11.3 | 88.5 | 0.3 | -4.67 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 8F0U | 28781 | 2024-03-16 | 2022-11-04 | 3.1 | 3.37 | 3.22 | 3.6 | 0.031 | 1.77 | 0.0 | 0.13 | 9.86 | 0.01 | 2.388 | 0.67 | 0.00 | 0.8 | 99.2 | 0.0 | 0.72 | 0.31 | 0.31 | 0.91 | 3.5 | 0.005 | 0.69 | 0.0 | 0.05 | 14.09 | 0.00 | 1.903 | 8.39 | 1.73 | 6.6 | 93.4 | 0.0 | -1.02 | 2.15 | 0.53 | 0.67 | 1.75 | 72240 | 4848 | 36 | 0 | 0 | 0 | 36756 | logfile |
✔ | 7TMC | 25995 | 2024-03-10 | 2022-01-19 | 3.25 | 3.24 | 2.95 | 4.2 | 0.005 | 0.72 | 0.0 | 0.07 | 18.02 | 0.01 | 2.152 | 13.78 | 0.00 | 9.5 | 90.5 | 0.0 | -4.08 | 0.21 | 0.31 | -0.39 | 3.5 | 0.003 | 0.84 | 0.0 | 0.06 | 15.57 | 0.01 | 2.182 | 16.12 | 5.29 | 9.5 | 90.5 | 0.0 | -4.13 | 1.95 | 0.34 | 0.75 | 3.02 | 3426 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 8RC4 | 19047 | 2024-03-17 | 2023-12-06 | 3.1 | 4.01 | 2.99 | 7.5 | 0.005 | 0.80 | 0.0 | 0.05 | 15.58 | 0.01 | 2.017 | 2.88 | 0.10 | 3.9 | 96.0 | 0.0 | 0.73 | 0.69 | 0.31 | -0.03 | 2.5 | 0.004 | 0.80 | 0.0 | 0.05 | 16.44 | 0.00 | 1.436 | 21.80 | 1.52 | 4.4 | 95.6 | 0.0 | -0.06 | 1.35 | 0.82 | 0.64 | 0.61 | 78273 | 11105 | 18 | 0 | 4 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2024-03-14 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 12.06 | 0.00 | 2.092 | 22.70 | 0.00 | 6.5 | 93.4 | 0.1 | -0.69 | 2.09 | 0.46 | 0.57 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7J | 28905 | 2024-03-10 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 14.09 | 0.01 | 2.143 | 18.06 | 0.00 | 5.7 | 94.3 | 0.0 | -2.85 | 2.92 | 0.44 | 0.43 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8RBX | 19038 | 2024-03-16 | 2023-12-05 | 4.1 | 4.04 | 3.99 | 7.7 | 0.007 | 0.91 | 2.0 | 0.07 | 18.74 | 0.01 | 2.138 | 5.09 | 0.56 | 4.8 | 95.2 | 0.0 | -0.02 | 0.71 | 0.32 | — | 3.0 | 0.010 | 1.06 | 1.0 | 0.05 | 16.40 | 0.01 | 1.822 | 33.06 | 0.00 | 6.7 | 93.1 | 0.2 | -0.59 | 1.81 | 0.77 | 0.55 | — | 129226 | 16906 | 56 | 326 | 76 | 0 | 0 | logfile |