Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X2A	32963	2023-04-29	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	6.97	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.004	0.80	0.0	0.05	15.31	0.00	2.027	14.46	2.07	3.8	96.2	0.1	-0.27	1.78	0.82	0.79	2.19	26800	3486	5	0	0	0	0	logfile
✔	6JXA	9892	2023-04-23	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	8D6X	27225	2023-04-25	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	7WD9	32435	2023-04-26	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.64	0.0	0.04	13.62	0.00	1.877	11.74	0.23	5.5	94.4	0.1	-0.85	1.33	0.75	0.68	1.07	69720	4533	9	0	0	0	34404	logfile
✔	6FU8	4319	2023-04-19	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7NK2	12429	2023-04-28	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.005	0.80	0.0	0.04	13.93	0.01	1.842	25.56	0.00	9.2	90.8	0.0	-1.77	4.62	0.74	0.69	—	28776	1794	6	23	0	0	13868	logfile
✔	7JGF	22325	2023-04-20	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✘	5ZWM	6972	2023-04-21	2018-05-16	3.4	3.37	—	3.3	0.007	1.15	10.0	0.06	12.54	0.01	1.786	18.95	0.72	5.9	93.5	0.6	-3.22	0.51	0.43	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111041	12858	61	634	8	0	0	logfile
✔	6XTB	10618	2023-04-19	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	8EXP	28658	2023-04-21	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.70	0.0	0.04	13.28	0.00	2.061	14.99	0.00	4.7	95.3	0.0	0.30	1.14	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✔	5A8L	3099	2023-04-22	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	7XZZ	33535	2023-04-24	2022-06-03	4.07	5.32	3.99	4.6	0.006	0.92	0.0	0.06	25.15	0.00	1.717	11.14	0.15	1.7	98.3	0.0	0.69	0.70	0.43	—	4.6	0.003	0.66	0.0	0.04	25.57	0.00	2.008	13.06	0.07	1.6	98.4	0.0	1.28	0.88	0.87	0.80	—	18623	1554	14	310	0	0	0	logfile
✔	6PB6	20288	2023-04-26	2019-06-13	4.29	5.03	—	4.3	0.010	1.13	0.0	0.05	16.04	0.01	1.968	10.82	0.11	10.6	89.1	0.3	-4.79	0.68	0.43	—	4.3	0.003	0.68	0.0	0.04	16.93	0.00	1.881	17.30	0.00	8.7	91.3	0.1	-2.58	0.93	0.83	0.74	—	69824	4091	13	156	5	0	34388	logfile
✘	6KN8	0729	2023-04-21	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	9.21	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60966	7669	44	0	15	0	0	logfile
✔	6PMJ	20395	2023-04-21	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.71	0.0	0.04	17.51	0.00	1.817	21.36	0.34	8.4	91.4	0.1	-2.26	1.66	0.89	0.77	0.03	57984	3453	10	110	4	0	28609	logfile
✔	6PB4	20286	2023-04-26	2019-06-13	4.35	5.03	—	4.3	0.010	1.16	0.0	0.06	16.29	0.01	1.840	11.04	0.06	11.5	88.1	0.4	-4.77	0.69	0.43	—	4.2	0.003	0.68	0.0	0.04	16.64	0.00	1.509	17.65	0.00	8.8	91.1	0.2	-2.71	1.23	0.83	0.73	—	69922	4091	14	158	6	0	34409	logfile
✔	6YRK	10890	2023-04-29	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.64	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.003	0.72	0.0	0.04	14.01	0.00	2.124	20.91	0.00	5.0	94.9	0.1	-1.13	1.88	0.85	0.68	—	15058	1937	2	0	0	0	0	logfile
✔	7MDW	23782	2023-04-20	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	3J03	5138	2023-04-21	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	5.8	0.003	0.82	0.0	0.04	14.05	0.01	2.286	21.54	0.00	3.1	96.9	0.0	-0.66	1.46	0.82	0.68	—	58640	7856	16	0	0	0	0	logfile
✔	7UiG	26545	2023-04-28	2022-03-29	4.3	8.24	4.32	3.9	0.005	0.80	0.0	0.05	12.88	0.01	0.850	11.11	0.09	1.3	98.5	0.1	1.54	0.45	0.44	—	3.9	0.011	0.85	0.0	0.04	12.99	0.01	2.065	23.76	0.00	3.7	96.3	0.0	0.65	0.85	0.58	0.79	—	27580	3390	17	0	0	0	0	logfile

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