Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LYP	23598	2023-07-11	2021-03-07	4.05	4.38	—	4.1	0.013	1.73	0.0	0.09	13.10	0.01	2.509	0.28	0.71	6.7	92.7	0.6	-1.22	0.82	0.81	—	4.1	0.002	0.61	0.0	0.04	12.67	0.00	2.106	8.20	0.00	4.4	95.6	0.0	0.32	1.27	0.82	0.81	—	23504	2985	6	0	28	0	0	logfile
✔	6MB3	9065	2023-07-08	2018-08-29	3.37	3.47	—	3.4	0.020	1.75	0.0	0.09	9.45	0.01	2.273	0.28	0.00	3.7	96.1	0.1	0.34	0.73	0.86	4.52	3.4	0.003	0.66	0.0	0.04	14.01	0.00	2.193	7.66	0.23	5.5	94.4	0.0	0.04	1.27	0.74	0.88	3.63	16423	2178	19	0	0	0	0	logfile
✔	7KDG	22821	2023-07-11	2020-10-08	3.01	3.39	—	3.3	0.014	1.76	3.0	0.10	12.77	0.01	2.515	0.28	0.31	6.2	93.5	0.3	-0.92	0.77	0.78	3.64	3.3	0.004	0.63	0.0	0.04	14.50	0.00	2.111	5.92	0.12	3.8	96.2	0.0	0.23	1.23	0.77	0.83	2.77	23700	2916	21	0	63	0	0	logfile
✔	6WJ5	21688	2023-07-16	2020-04-11	3.6	3.81	—	3.8	0.012	1.84	4.0	0.10	13.33	0.01	2.369	0.28	0.05	3.8	95.7	0.5	-2.50	0.51	0.70	3.53	3.8	0.004	0.60	0.0	0.04	16.24	0.00	2.011	6.97	0.26	3.5	96.5	0.0	0.84	1.46	0.59	0.78	2.62	36320	2248	8	0	4	0	18268	logfile
✔	8DMB	27533	2023-07-07	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	15.85	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.55	0.0	0.03	16.17	0.01	1.969	3.37	0.00	3.1	96.9	0.0	0.52	0.57	0.70	0.83	4.27	14225	328	5	275	2	0	5728	logfile
✔	6WPS	21864	2023-07-13	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.34	0.0	0.09	10.40	0.01	2.364	0.29	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.003	0.63	0.0	0.04	14.78	0.00	2.061	7.88	0.14	2.9	97.1	0.0	-0.01	1.66	0.78	0.82	2.91	28116	3540	27	0	75	0	0	logfile
✔	7Z8L	14556	2023-07-08	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	6.41	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.005	0.71	0.0	0.04	7.01	0.00	1.822	7.86	0.00	6.5	93.5	0.0	0.20	0.73	0.84	0.81	—	16513	3311	3	0	5	0	0	logfile
✔	7L7T	23218	2023-07-07	2020-12-30	3.7	4.14	3.63	3.9	0.023	1.69	0.0	0.16	10.29	0.01	2.419	0.30	0.00	1.2	98.8	0.0	0.98	0.85	0.85	2.90	3.8	0.005	0.65	0.0	0.04	13.99	0.00	2.225	7.63	0.32	3.2	96.8	0.0	1.05	0.75	0.85	0.85	2.52	15423	1770	39	0	102	0	0	logfile
✔	7LYQ	23599	2023-07-11	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	1.0	0.10	12.83	0.01	2.521	0.30	0.43	5.2	94.3	0.4	-0.83	0.77	0.83	3.22	3.5	0.005	0.63	0.0	0.04	14.34	0.00	2.202	5.36	0.24	3.7	96.3	0.0	0.32	1.24	0.79	0.86	2.66	23641	2985	6	0	38	0	0	logfile
✔	7KDK	22825	2023-07-11	2020-10-08	2.8	3.18	—	3.1	0.014	1.78	8.0	0.10	13.03	0.01	2.490	0.30	0.12	5.2	94.7	0.1	-0.98	0.75	0.77	3.89	3.1	0.003	0.60	0.0	0.04	15.29	0.00	2.146	6.89	1.49	2.8	97.2	0.0	0.33	0.66	0.72	0.80	3.19	23688	2916	21	0	63	0	0	logfile
✔	6PZK	20536	2023-07-06	2019-08-01	3.2	3.65	—	3.6	0.012	1.93	16.0	0.12	14.42	0.02	2.533	0.30	1.95	3.8	96.2	0.0	-2.86	0.65	0.75	2.57	3.6	0.003	0.62	0.0	0.04	16.20	0.00	2.151	9.82	0.34	2.2	97.8	0.0	1.46	1.70	0.73	0.82	1.75	13153	1624	5	0	0	0	0	logfile
✔	6VGK	21197	2023-07-09	2020-01-08	3.1	3.32	—	3.4	0.020	1.84	0.0	0.09	9.91	0.01	2.394	0.31	0.00	3.4	95.8	0.8	-0.29	0.54	0.69	4.26	3.4	0.006	0.72	0.0	0.05	14.02	0.00	2.173	9.12	0.40	4.3	95.5	0.3	1.56	0.64	0.66	0.81	3.37	19222	2513	14	0	0	0	0	logfile
✔	8G3o	29706	2023-07-09	2023-02-08	3.1	3.51	3.05	3.3	0.015	1.71	7.0	0.09	12.94	0.01	2.218	0.31	0.00	3.8	95.6	0.6	-0.63	0.84	0.91	4.38	3.3	0.005	0.73	0.0	0.05	15.04	0.00	2.187	8.15	0.31	3.6	96.2	0.2	-0.35	1.97	0.82	0.90	3.75	18487	2272	38	0	81	0	0	logfile
✔	6ZMS	11300	2023-07-06	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.004	0.64	0.0	0.04	15.70	0.00	2.031	5.57	0.14	6.2	93.4	0.4	-1.93	1.76	0.35	0.84	3.57	12570	818	4	0	0	0	6173	logfile
✔	7N5D	24186	2023-07-10	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✔	7TXZ	26162	2023-07-06	2022-02-10	3.2	3.25	3.11	3.2	0.017	1.50	0.0	0.10	10.13	0.01	2.400	0.32	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.003	0.64	0.0	0.05	13.80	0.00	2.101	7.62	0.38	3.5	96.4	0.1	0.16	0.55	0.72	0.84	3.88	11303	1464	22	0	29	0	0	logfile
✔	6C0V	7325	2023-07-05	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.63	0.0	0.04	16.30	0.00	1.939	7.86	0.96	2.8	97.2	0.0	1.00	1.45	0.58	0.86	2.33	8976	1154	1	0	4	0	0	logfile
✔	6UJB	20795	2023-07-05	2019-10-02	3.51	3.73	—	3.6	0.014	1.45	0.0	0.08	10.93	0.01	1.782	0.33	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.004	0.61	0.0	0.05	14.67	0.00	2.140	7.36	0.11	3.5	96.5	0.0	-0.10	0.73	0.79	0.85	3.00	9193	1180	11	0	23	0	0	logfile
✘	7PMN	13539	2023-07-12	2021-09-02	3.2	3.93	—	3.5	0.007	0.94	0.0	0.05	14.26	0.01	1.984	0.34	0.55	2.9	97.1	0.0	-0.35	0.79	0.71	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74640	9131	28	67	11	0	0	logfile
✔	6X2B	22000	2023-07-10	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.34	2.08	6.7	92.9	0.4	-1.71	0.77	0.76	2.50	3.9	0.003	0.59	0.0	0.04	13.26	0.00	2.164	6.09	0.05	4.0	96.0	0.0	0.45	0.52	0.83	0.82	2.06	21120	2861	3	0	0	0	0	logfile

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