Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VNY	32047	2023-02-24	2021-10-12	2.79	2.20	—	2.6	0.020	3.95	0.0	0.04	18.57	0.01	2.042	10.90	0.68	2.0	98.0	0.0	1.66	0.47	0.75	4.24	2.6	0.006	1.13	0.0	0.04	18.45	0.01	2.001	8.56	2.21	2.3	97.7	0.0	1.67	1.13	0.61	0.84	3.78	22472	2283	64	0	76	0	0	logfile
✔	7JZ6	22530	2023-02-23	2020-09-01	2.53	2.20	—	2.2	0.009	1.04	8.0	0.11	19.13	0.01	1.219	8.05	11.17	7.8	92.2	0.0	-3.03	0.58	0.65	2.78	2.2	0.003	0.62	0.0	0.04	19.08	0.00	2.177	5.78	5.84	2.8	97.2	0.0	0.25	1.59	0.57	0.66	2.47	20842	2646	12	0	4	18	0	logfile
✔	7VUG	32127	2023-02-19	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.88	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	12.95	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✘	6RoH	32512	2023-02-20	2019-05-13	2.8	2.20	—	40.0	0.006	0.88	0.0	0.05	13.67	0.01	1.709	4.00	0.23	3.4	96.6	0.0	-4.73	0.04	0.00	0.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11758	1449	7	0	9	2	0	logfile
✔	7EZM	31389	2023-02-18	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.64	0.0	0.04	16.19	0.00	2.114	10.06	2.51	2.3	97.7	0.0	0.47	0.62	0.78	0.80	2.89	9008	1171	6	0	0	0	0	logfile
✔	7S8N	24898	2023-02-18	2021-09-18	2.9	2.20	2.92	2.1	0.012	0.90	0.0	0.06	13.04	0.01	2.202	4.10	0.00	5.1	94.9	0.0	-0.33	0.79	0.80	3.96	2.1	0.004	0.60	0.0	0.04	15.91	0.00	2.215	3.02	1.47	3.2	96.8	0.0	0.80	1.01	0.82	0.83	2.92	8154	1090	6	0	1	0	0	logfile
✔	7W8G	32355	2023-02-23	2021-12-07	2.52	2.20	—	2.5	0.004	0.77	0.0	0.05	13.85	0.01	2.042	5.41	0.04	2.3	97.7	0.0	-0.29	0.72	0.75	2.86	2.5	0.003	0.59	0.0	0.04	16.95	0.00	1.884	8.05	2.29	2.2	97.8	0.0	0.73	0.53	0.75	0.80	2.78	62460	7876	24	0	34	0	0	logfile
✔	7QA8	13880	2023-02-17	2021-11-16	2.7	2.20	2.66	2.7	0.008	1.11	0.0	0.06	14.85	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.003	0.65	0.0	0.04	16.74	0.00	2.173	6.06	2.80	3.9	96.1	0.0	2.51	0.40	0.59	0.81	2.87	6111	622	11	0	38	70	0	logfile
✔	7WP9	32679	2023-02-25	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.66	0.0	0.05	16.39	0.00	2.081	9.21	2.39	5.4	94.6	0.0	-1.56	1.00	0.76	0.81	2.49	25077	3141	13	0	28	0	0	logfile
✔	7V0S	26949	2023-02-19	2022-05-10	2.5	2.21	2.53	2.3	0.004	0.73	0.0	0.05	16.59	0.00	2.208	5.04	2.55	1.7	98.2	0.1	1.73	0.70	0.88	4.46	2.3	0.004	0.59	0.0	0.04	16.67	0.00	2.190	6.46	2.36	1.9	98.1	0.0	1.84	0.48	0.70	0.89	4.58	10303	1315	10	0	3	178	0	logfile
✔	7JVR	22511	2023-02-18	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.70	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.20	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	7WiC	32528	2023-02-19	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	7QWM	14189	2023-02-17	2022-01-25	2.76	2.21	2.47	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.006	0.76	0.0	0.05	18.44	0.00	2.247	10.77	0.79	7.8	92.2	0.0	-2.93	0.60	0.37	0.82	6.36	3255	405	3	0	0	0	0	logfile
✔	7PiL	13441	2023-02-24	2021-08-20	2.5	2.21	—	2.4	0.005	0.96	0.0	0.05	16.36	0.01	2.058	1.90	0.21	1.7	98.3	0.0	1.10	0.73	0.84	5.38	2.3	0.005	0.78	0.0	0.04	17.78	0.00	1.875	6.84	1.32	1.0	99.0	0.0	2.71	1.25	0.72	0.87	4.70	22480	2291	66	0	73	4	0	logfile
✔	7o6Q	12740	2023-02-18	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.72	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7UZ3	26874	2023-02-22	2022-05-08	2.35	2.21	2.35	2.2	0.005	0.80	0.0	0.08	17.05	0.01	2.063	2.87	0.84	2.2	97.8	0.0	1.74	0.62	0.87	5.34	2.2	0.003	0.53	0.0	0.04	16.55	0.00	2.107	6.11	0.63	2.2	97.8	0.0	1.87	0.28	0.63	0.87	5.22	18415	1114	10	0	20	153	9100	logfile
✔	8A2Y	15108	2023-02-21	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	7B2M	11988	2023-02-24	2020-11-27	3.39	2.21	3.36	3.0	0.003	0.48	0.0	0.04	13.79	0.00	2.009	6.54	0.00	3.6	96.4	0.0	-0.15	0.72	0.72	2.60	2.1	0.004	0.62	0.0	0.04	16.00	0.00	2.032	9.76	0.47	5.4	94.6	0.0	-0.69	1.24	0.73	0.74	2.85	23198	1506	6	0	4	0	11534	logfile
✔	7WY0	32883	2023-02-18	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.68	0.0	0.04	15.36	0.00	2.124	12.48	1.97	5.3	94.7	0.0	0.15	0.47	0.75	0.75	2.68	8723	1112	5	0	0	0	0	logfile
✔	6XS6	22301	2023-02-22	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile

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