Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FX5	29524	2023-09-29	2023-01-23	2.45	3.11	2.28	2.8	0.008	1.02	0.0	0.05	12.35	0.01	2.299	2.42	0.11	2.0	98.0	0.0	-0.73	0.76	0.90	4.91	2.8	0.003	0.60	0.0	0.04	14.44	0.00	2.198	5.98	0.53	1.2	98.8	0.0	1.35	1.01	0.75	0.91	4.04	8818	1127	9	0	2	47	0	logfile
✔	7QKZ	14058	2023-09-27	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.60	0.01	2.257	11.23	0.00	1.2	98.8	0.0	-0.53	5.08	0.34	0.64	6.63	1701	99	9	0	0	0	891	logfile
✔	8JMN	36424	2023-09-30	2023-06-05	2.26	2.43	2.28	2.4	0.007	0.92	0.0	0.05	18.57	0.01	1.890	5.76	3.29	2.3	97.7	0.0	1.14	0.68	0.86	4.55	2.4	0.005	0.66	0.0	0.05	18.48	0.01	1.781	6.11	3.29	1.8	98.2	0.0	0.69	0.79	0.69	0.87	4.57	10491	1251	6	0	11	373	0	logfile
✔	8E3X	27872	2023-09-29	2022-08-17	2.3	3.02	2.29	2.8	0.003	0.58	0.0	0.04	13.02	0.00	2.239	5.84	0.00	2.1	97.9	0.0	1.49	0.70	0.82	3.16	2.8	0.003	0.53	0.0	0.04	15.31	0.00	2.206	5.61	0.84	2.1	97.9	0.0	1.71	0.97	0.75	0.89	3.61	8979	1140	8	0	0	11	0	logfile
✔	7SQV	25396	2023-09-27	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	7S3i	24825	2023-09-28	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	6UUS	20901	2023-09-29	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	8E3Y	27873	2023-09-29	2022-08-17	2.3	2.68	2.31	2.6	0.003	0.60	0.0	0.05	12.65	0.00	2.237	5.72	0.11	2.0	98.0	0.0	1.26	0.72	0.85	4.19	2.6	0.003	0.54	0.0	0.04	15.61	0.00	2.222	8.10	0.42	1.9	98.1	0.0	1.94	0.80	0.74	0.88	4.23	8966	1139	8	0	0	14	0	logfile
✔	7UZU	26918	2023-09-28	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.52	0.0	0.04	17.57	0.00	2.102	3.83	0.78	4.0	96.0	0.0	2.44	0.18	0.59	0.87	5.51	7399	483	4	0	0	79	3655	logfile
✔	6UVA	20906	2023-09-29	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile
✔	6XYo	10650	2023-09-28	2020-01-30	2.6	2.79	2.31	2.7	0.008	0.74	0.0	0.06	12.93	0.00	2.300	5.78	0.93	2.6	97.4	0.0	-2.90	0.46	0.89	5.98	2.7	0.007	0.62	0.0	0.05	17.92	0.00	2.105	4.45	2.22	4.4	95.6	0.0	-1.84	0.96	0.48	0.91	4.74	5490	800	10	0	0	0	0	logfile
✔	8oRF	17122	2023-09-27	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.004	0.61	0.0	0.05	17.12	0.00	2.097	5.38	1.52	4.0	96.0	0.0	-3.23	1.23	0.38	0.82	5.50	4653	303	3	0	0	0	2382	logfile
✔	6QJP	4565	2023-09-27	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.004	0.77	0.0	0.05	12.80	0.00	2.338	11.00	0.00	4.3	95.7	0.0	-3.48	1.60	0.32	0.73	4.73	816	105	3	0	0	0	0	logfile
✔	8F2A	28810	2023-09-30	2022-11-07	2.2	2.40	2.32	2.5	0.004	0.60	0.0	0.05	13.84	0.00	2.188	4.68	0.76	1.7	98.3	0.0	-2.70	0.65	0.84	4.09	2.5	0.003	0.59	0.0	0.04	16.15	0.00	2.174	6.56	1.42	1.7	98.3	0.0	0.60	0.52	0.64	0.84	3.72	10044	1276	9	0	5	0	0	logfile
✔	7YNG	33961	2023-09-27	2022-07-30	3.1	3.08	2.33	3.4	0.009	0.85	0.0	0.06	13.71	0.00	2.192	9.66	0.00	10.4	89.6	0.0	-4.25	0.36	0.76	3.68	3.4	0.002	0.51	0.0	0.05	14.89	0.00	2.286	6.32	0.00	4.9	95.1	0.0	-1.98	0.36	0.34	0.74	3.39	2628	378	6	0	0	0	0	logfile
✔	7ZZ5	15035	2023-09-27	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.33	0.01	2.256	4.98	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.58	0.0	0.04	17.12	0.00	2.183	9.12	1.60	3.3	96.7	0.0	0.44	0.32	0.89	0.89	3.82	3633	461	1	0	2	0	0	logfile
✔	8EEP	28054	2023-09-28	2022-09-07	2.2	2.31	2.33	2.3	0.004	1.00	0.0	0.71	12.36	0.00	0.286	7.98	1.59	0.0	100.0	0.0	1.98	0.74	0.81	4.21	2.3	0.030	1.63	0.0	0.12	16.78	0.01	2.001	9.57	1.36	0.6	99.4	0.0	1.73	1.37	0.74	0.81	3.61	108060	13260	60	0	120	0	0	logfile
✘	8FAZ	28961	2023-09-28	2022-11-29	2.3	2.71	2.34	3.1	0.004	0.62	0.0	0.04	10.77	0.00	1.986	10.57	0.50	2.7	97.3	0.0	0.35	0.83	0.81	3.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7331	926	7	0	5	0	0	logfile
✔	7R06	14220	2023-09-30	2022-02-01	2.27	2.36	2.34	2.3	0.007	0.85	6.0	0.06	20.28	0.01	2.153	12.58	5.53	1.2	98.6	0.2	0.06	0.74	0.80	4.13	2.3	0.008	0.74	0.0	0.05	19.63	0.01	2.143	7.49	3.03	1.6	98.3	0.2	0.51	0.52	0.78	0.85	4.66	31320	3588	12	66	0	0	0	logfile
✔	6SDZ	10150	2023-09-28	2019-07-29	2.97	3.77	2.34	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.39	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.4	0.006	1.19	0.0	0.06	15.81	0.01	2.127	29.73	2.91	6.6	93.4	0.0	-3.27	1.94	0.85	0.86	3.90	7909	1012	11	0	0	0	0	logfile

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