Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HKM	34855	2023-11-20	2022-11-27	2.95	2.42	3.07	1.9	0.003	0.71	3.0	0.05	15.55	0.01	1.484	10.49	1.30	2.6	97.3	0.1	-0.56	0.80	0.84	3.13	1.8	0.004	0.64	0.0	0.04	16.35	0.00	2.164	9.81	2.34	2.9	97.0	0.1	0.53	1.16	0.79	0.83	2.93	28855	3596	8	0	19	0	0	logfile
✘	6TAX	10429	2023-11-21	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.46	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35235	4349	1	0	71	0	0	logfile
✔	8oRM	17129	2023-11-13	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.77	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.005	0.69	0.0	0.05	16.78	0.01	2.187	6.14	1.08	1.5	98.4	0.2	1.36	0.18	0.70	0.83	5.92	5341	632	7	0	2	210	0	logfile
✔	7T6U	25728	2023-11-14	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.004	0.66	0.0	0.04	16.06	0.00	2.121	9.58	2.24	2.2	97.8	0.0	0.27	1.20	0.79	0.81	3.37	9033	1152	6	0	2	0	0	logfile
✘	7U9Q	26405	2023-11-20	2022-03-11	3.11	3.51	—	1.9	0.003	0.85	0.0	0.04	14.10	0.01	2.065	12.40	0.66	3.4	96.5	0.1	-1.28	0.86	0.79	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138608	17324	12	0	12	0	0	logfile
✔	7UWM	26836	2023-11-14	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	18.27	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.003	0.57	0.0	0.04	18.46	0.00	2.122	7.90	4.39	3.5	96.5	0.0	-0.58	0.24	0.80	0.79	2.46	7972	967	9	0	9	0	0	logfile
✔	8Q9F	18279	2023-11-13	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.64	0.0	0.05	15.99	0.00	2.249	3.13	0.00	2.5	97.5	0.0	-2.11	1.84	0.44	0.86	7.01	6390	414	6	0	0	0	3258	logfile
✔	7N8o	24239	2023-11-14	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✘	7U9Z	26410	2023-11-20	2022-03-11	3.29	3.51	—	1.9	0.003	0.76	4.0	0.04	15.16	0.01	1.938	11.72	1.19	4.6	95.3	0.1	0.57	0.86	0.79	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	138688	17332	12	0	20	0	0	logfile
✔	7WiC	32528	2023-11-14	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	7P6A	13223	2023-11-13	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	7QQ3	14121	2023-11-20	2022-01-06	2.1	1.65	2.18	1.9	0.008	0.76	5.0	0.05	14.94	0.02	1.832	2.70	4.22	3.6	96.0	0.4	-0.31	0.50	0.61	3.73	1.9	0.004	0.88	4.0	0.04	15.29	0.01	1.784	7.34	1.88	3.8	96.0	0.2	-0.53	1.23	0.64	0.70	4.00	87594	2903	35	3016	154	28	0	logfile
✔	7RCV	24407	2023-11-14	2021-07-08	2.01	1.78	—	1.9	0.024	2.38	0.0	0.11	20.31	0.01	1.915	13.94	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.007	0.98	0.0	0.06	19.24	0.01	1.984	13.17	1.79	3.0	97.0	0.0	0.41	0.91	0.81	0.84	5.30	54656	5544	114	0	228	1236	0	logfile
✔	7WP9	32679	2023-11-19	2022-01-23	2.56	2.20	—	1.9	0.004	0.78	1.0	0.05	14.32	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.66	0.0	0.05	16.46	0.00	2.108	9.33	2.25	5.2	94.8	0.0	-1.50	1.01	0.76	0.81	2.44	25077	3141	13	0	28	0	0	logfile
✔	7N1U	24123	2023-11-19	2021-05-28	3.14	2.62	—	1.9	0.013	1.77	7.0	0.13	14.03	0.01	2.003	6.59	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	2.1	0.004	0.77	0.0	0.05	15.73	0.00	2.145	11.15	0.46	4.5	95.5	0.0	-0.05	0.65	0.84	0.82	2.39	26619	3225	39	0	99	0	0	logfile
✔	8DZP	27804	2023-11-14	2022-08-08	2.71	2.09	2.70	1.9	0.019	0.72	0.0	0.10	13.90	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.8	0.005	0.67	0.0	0.05	15.74	0.00	2.112	8.53	1.39	4.6	95.4	0.0	0.40	0.33	0.80	0.82	3.75	8657	1120	6	0	1	0	0	logfile
✔	8AB6	15312	2023-11-21	2022-07-04	2.0	1.80	1.92	1.9	0.010	1.60	28.0	0.11	16.94	0.01	2.091	3.07	1.89	2.3	97.7	0.0	-0.82	0.68	0.86	6.61	1.9	0.003	0.59	0.0	0.04	16.51	0.00	2.033	3.75	0.65	1.6	98.4	0.0	2.05	0.98	0.72	0.87	6.11	32914	3878	53	0	30	1326	0	logfile
✔	8F0J	28758	2023-11-14	2022-11-03	2.0	1.77	1.94	1.9	0.011	0.61	1.0	0.05	14.78	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.003	0.58	0.0	0.04	16.66	0.00	2.212	5.89	1.01	2.1	97.9	0.0	1.58	0.82	0.54	0.77	5.38	9678	1157	11	0	18	25	0	logfile
✔	8CA7	16520	2023-11-17	2023-01-24	2.06	1.61	1.93	1.9	0.012	1.53	0.0	0.14	14.84	0.03	1.726	0.60	0.71	3.0	96.8	0.1	-1.46	0.62	0.75	4.98	1.9	0.004	0.78	0.0	0.05	15.37	0.01	1.755	8.56	1.56	2.2	97.7	0.1	1.22	0.46	0.68	0.78	4.87	18093	848	19	502	42	543	0	logfile
✔	8F2B	28812	2023-11-15	2022-11-07	2.0	1.79	2.02	1.9	0.011	0.55	0.0	0.04	14.19	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.003	0.59	0.0	0.04	15.98	0.00	2.198	6.30	1.42	2.5	97.5	0.0	1.21	0.95	0.55	0.75	5.05	10360	1273	12	0	16	31	0	logfile

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