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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HKM | 34855 | 2023-11-20 | 2022-11-27 | 2.95 | 2.42 | 3.07 | 1.9 | 0.003 | 0.71 | 3.0 | 0.05 | 15.55 | 0.01 | 1.484 | 10.49 | 1.30 | 2.6 | 97.3 | 0.1 | -0.56 | 0.80 | 0.84 | 3.13 | 1.8 | 0.004 | 0.64 | 0.0 | 0.04 | 16.35 | 0.00 | 2.164 | 9.81 | 2.34 | 2.9 | 97.0 | 0.1 | 0.53 | 1.16 | 0.79 | 0.83 | 2.93 | 28855 | 3596 | 8 | 0 | 19 | 0 | 0 | logfile |
✘ | 6TAX | 10429 | 2023-11-21 | 2019-10-31 | 3.2 | 2.63 | — | 1.9 | 0.009 | 1.13 | 0.0 | 0.06 | 11.18 | 0.01 | 2.065 | 5.46 | 0.46 | 9.5 | 90.3 | 0.2 | -4.10 | 0.88 | 0.80 | 3.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35235 | 4349 | 1 | 0 | 71 | 0 | 0 | logfile |
✔ | 8oRM | 17129 | 2023-11-13 | 2023-04-14 | 1.9 | 1.83 | 1.88 | 1.9 | 0.004 | 0.58 | 0.0 | 0.04 | 16.77 | 0.00 | 2.236 | 3.99 | 0.90 | 1.6 | 98.2 | 0.2 | 1.88 | 0.70 | 0.81 | 5.96 | 1.9 | 0.005 | 0.69 | 0.0 | 0.05 | 16.78 | 0.01 | 2.187 | 6.14 | 1.08 | 1.5 | 98.4 | 0.2 | 1.36 | 0.18 | 0.70 | 0.83 | 5.92 | 5341 | 632 | 7 | 0 | 2 | 210 | 0 | logfile |
✔ | 7T6U | 25728 | 2023-11-14 | 2021-12-14 | 2.9 | 2.23 | — | 1.9 | 0.006 | 1.00 | 4.0 | 0.06 | 12.93 | 0.01 | 2.315 | 3.49 | 0.31 | 2.0 | 98.0 | 0.0 | -3.84 | 0.76 | 0.78 | 4.04 | 2.0 | 0.004 | 0.66 | 0.0 | 0.04 | 16.06 | 0.00 | 2.121 | 9.58 | 2.24 | 2.2 | 97.8 | 0.0 | 0.27 | 1.20 | 0.79 | 0.81 | 3.37 | 9033 | 1152 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7U9Q | 26405 | 2023-11-20 | 2022-03-11 | 3.11 | 3.51 | — | 1.9 | 0.003 | 0.85 | 0.0 | 0.04 | 14.10 | 0.01 | 2.065 | 12.40 | 0.66 | 3.4 | 96.5 | 0.1 | -1.28 | 0.86 | 0.79 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138608 | 17324 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7UWM | 26836 | 2023-11-14 | 2022-05-03 | 2.5 | 2.14 | 2.51 | 1.9 | 0.004 | 0.59 | 0.0 | 0.04 | 18.27 | 0.00 | 2.107 | 6.68 | 2.96 | 3.0 | 97.0 | 0.0 | -0.69 | 0.80 | 0.79 | 2.42 | 1.9 | 0.003 | 0.57 | 0.0 | 0.04 | 18.46 | 0.00 | 2.122 | 7.90 | 4.39 | 3.5 | 96.5 | 0.0 | -0.58 | 0.24 | 0.80 | 0.79 | 2.46 | 7972 | 967 | 9 | 0 | 9 | 0 | 0 | logfile |
✔ | 8Q9F | 18279 | 2023-11-13 | 2023-08-20 | 1.91 | 1.89 | 1.88 | 1.9 | 0.011 | 1.78 | 0.0 | 0.09 | 10.30 | 0.01 | 2.515 | 0.00 | 0.00 | 0.2 | 99.8 | 0.0 | -2.15 | 0.31 | 0.73 | 7.64 | 1.9 | 0.003 | 0.64 | 0.0 | 0.05 | 15.99 | 0.00 | 2.249 | 3.13 | 0.00 | 2.5 | 97.5 | 0.0 | -2.11 | 1.84 | 0.44 | 0.86 | 7.01 | 6390 | 414 | 6 | 0 | 0 | 0 | 3258 | logfile |
✔ | 7N8o | 24239 | 2023-11-14 | 2021-06-15 | 1.93 | 1.73 | — | 1.9 | 0.025 | 2.40 | 0.0 | 0.11 | 20.28 | 0.01 | 1.522 | 14.77 | 1.91 | 3.0 | 96.9 | 0.1 | 0.75 | 0.73 | 0.75 | 5.48 | 1.8 | 0.004 | 0.81 | 0.0 | 0.05 | 18.74 | 0.01 | 2.000 | 12.74 | 1.66 | 3.0 | 97.0 | 0.0 | 0.83 | 0.34 | 0.77 | 0.80 | 5.41 | 54656 | 5544 | 113 | 0 | 228 | 1236 | 0 | logfile |
✘ | 7U9Z | 26410 | 2023-11-20 | 2022-03-11 | 3.29 | 3.51 | — | 1.9 | 0.003 | 0.76 | 4.0 | 0.04 | 15.16 | 0.01 | 1.938 | 11.72 | 1.19 | 4.6 | 95.3 | 0.1 | 0.57 | 0.86 | 0.79 | 2.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138688 | 17332 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 7WiC | 32528 | 2023-11-14 | 2022-01-03 | 2.8 | 2.21 | — | 1.9 | 0.005 | 0.62 | 0.0 | 0.05 | 12.93 | 0.00 | 2.176 | 7.87 | 0.00 | 2.7 | 97.3 | 0.0 | 0.61 | 0.76 | 0.76 | 3.53 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 15.57 | 0.00 | 2.173 | 7.26 | 1.11 | 3.1 | 96.9 | 0.0 | 1.17 | 0.37 | 0.78 | 0.80 | 3.11 | 9048 | 1158 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P6A | 13223 | 2023-11-13 | 2021-07-15 | 1.9 | 1.91 | 1.88 | 1.9 | 0.004 | 0.72 | 0.0 | 0.06 | 12.30 | 0.01 | 2.247 | 3.33 | 0.00 | 3.8 | 96.2 | 0.0 | -3.07 | 0.51 | 0.86 | 7.13 | 1.9 | 0.003 | 0.65 | 0.0 | 0.05 | 14.15 | 0.00 | 2.293 | 4.99 | 0.00 | 4.7 | 95.3 | 0.0 | -2.61 | 0.38 | 0.55 | 0.89 | 7.74 | 4166 | 540 | 10 | 0 | 0 | 76 | 0 | logfile |
✔ | 7QQ3 | 14121 | 2023-11-20 | 2022-01-06 | 2.1 | 1.65 | 2.18 | 1.9 | 0.008 | 0.76 | 5.0 | 0.05 | 14.94 | 0.02 | 1.832 | 2.70 | 4.22 | 3.6 | 96.0 | 0.4 | -0.31 | 0.50 | 0.61 | 3.73 | 1.9 | 0.004 | 0.88 | 4.0 | 0.04 | 15.29 | 0.01 | 1.784 | 7.34 | 1.88 | 3.8 | 96.0 | 0.2 | -0.53 | 1.23 | 0.64 | 0.70 | 4.00 | 87594 | 2903 | 35 | 3016 | 154 | 28 | 0 | logfile |
✔ | 7RCV | 24407 | 2023-11-14 | 2021-07-08 | 2.01 | 1.78 | — | 1.9 | 0.024 | 2.38 | 0.0 | 0.11 | 20.31 | 0.01 | 1.915 | 13.94 | 1.99 | 2.6 | 97.4 | 0.0 | 0.92 | 0.78 | 0.79 | 5.10 | 1.9 | 0.007 | 0.98 | 0.0 | 0.06 | 19.24 | 0.01 | 1.984 | 13.17 | 1.79 | 3.0 | 97.0 | 0.0 | 0.41 | 0.91 | 0.81 | 0.84 | 5.30 | 54656 | 5544 | 114 | 0 | 228 | 1236 | 0 | logfile |
✔ | 7WP9 | 32679 | 2023-11-19 | 2022-01-23 | 2.56 | 2.20 | — | 1.9 | 0.004 | 0.78 | 1.0 | 0.05 | 14.32 | 0.01 | 2.294 | 4.05 | 0.40 | 4.9 | 95.0 | 0.1 | -4.01 | 0.71 | 0.72 | 2.33 | 2.0 | 0.005 | 0.66 | 0.0 | 0.05 | 16.46 | 0.00 | 2.108 | 9.33 | 2.25 | 5.2 | 94.8 | 0.0 | -1.50 | 1.01 | 0.76 | 0.81 | 2.44 | 25077 | 3141 | 13 | 0 | 28 | 0 | 0 | logfile |
✔ | 7N1U | 24123 | 2023-11-19 | 2021-05-28 | 3.14 | 2.62 | — | 1.9 | 0.013 | 1.77 | 7.0 | 0.13 | 14.03 | 0.01 | 2.003 | 6.59 | 1.56 | 6.1 | 93.7 | 0.3 | -1.65 | 0.83 | 0.80 | 3.13 | 2.1 | 0.004 | 0.77 | 0.0 | 0.05 | 15.73 | 0.00 | 2.145 | 11.15 | 0.46 | 4.5 | 95.5 | 0.0 | -0.05 | 0.65 | 0.84 | 0.82 | 2.39 | 26619 | 3225 | 39 | 0 | 99 | 0 | 0 | logfile |
✔ | 8DZP | 27804 | 2023-11-14 | 2022-08-08 | 2.71 | 2.09 | 2.70 | 1.9 | 0.019 | 0.72 | 0.0 | 0.10 | 13.90 | 0.01 | 2.216 | 5.26 | 0.11 | 3.6 | 96.4 | 0.0 | -0.46 | 0.78 | 0.78 | 3.63 | 1.8 | 0.005 | 0.67 | 0.0 | 0.05 | 15.74 | 0.00 | 2.112 | 8.53 | 1.39 | 4.6 | 95.4 | 0.0 | 0.40 | 0.33 | 0.80 | 0.82 | 3.75 | 8657 | 1120 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8AB6 | 15312 | 2023-11-21 | 2022-07-04 | 2.0 | 1.80 | 1.92 | 1.9 | 0.010 | 1.60 | 28.0 | 0.11 | 16.94 | 0.01 | 2.091 | 3.07 | 1.89 | 2.3 | 97.7 | 0.0 | -0.82 | 0.68 | 0.86 | 6.61 | 1.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.51 | 0.00 | 2.033 | 3.75 | 0.65 | 1.6 | 98.4 | 0.0 | 2.05 | 0.98 | 0.72 | 0.87 | 6.11 | 32914 | 3878 | 53 | 0 | 30 | 1326 | 0 | logfile |
✔ | 8F0J | 28758 | 2023-11-14 | 2022-11-03 | 2.0 | 1.77 | 1.94 | 1.9 | 0.011 | 0.61 | 1.0 | 0.05 | 14.78 | 0.00 | 2.246 | 4.03 | 0.40 | 1.1 | 98.9 | 0.0 | -1.49 | 0.53 | 0.75 | 5.18 | 1.9 | 0.003 | 0.58 | 0.0 | 0.04 | 16.66 | 0.00 | 2.212 | 5.89 | 1.01 | 2.1 | 97.9 | 0.0 | 1.58 | 0.82 | 0.54 | 0.77 | 5.38 | 9678 | 1157 | 11 | 0 | 18 | 25 | 0 | logfile |
✔ | 8CA7 | 16520 | 2023-11-17 | 2023-01-24 | 2.06 | 1.61 | 1.93 | 1.9 | 0.012 | 1.53 | 0.0 | 0.14 | 14.84 | 0.03 | 1.726 | 0.60 | 0.71 | 3.0 | 96.8 | 0.1 | -1.46 | 0.62 | 0.75 | 4.98 | 1.9 | 0.004 | 0.78 | 0.0 | 0.05 | 15.37 | 0.01 | 1.755 | 8.56 | 1.56 | 2.2 | 97.7 | 0.1 | 1.22 | 0.46 | 0.68 | 0.78 | 4.87 | 18093 | 848 | 19 | 502 | 42 | 543 | 0 | logfile |
✔ | 8F2B | 28812 | 2023-11-15 | 2022-11-07 | 2.0 | 1.79 | 2.02 | 1.9 | 0.011 | 0.55 | 0.0 | 0.04 | 14.19 | 0.00 | 2.278 | 5.13 | 1.32 | 1.0 | 99.0 | 0.0 | -2.02 | 0.54 | 0.74 | 4.60 | 1.9 | 0.003 | 0.59 | 0.0 | 0.04 | 15.98 | 0.00 | 2.198 | 6.30 | 1.42 | 2.5 | 97.5 | 0.0 | 1.21 | 0.95 | 0.55 | 0.75 | 5.05 | 10360 | 1273 | 12 | 0 | 16 | 31 | 0 | logfile |