The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GS9 | 34226 | 2024-03-10 | 2022-09-05 | 2.66 | 2.88 | 2.77 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 11.98 | 0.00 | 2.297 | 3.11 | 0.60 | 5.6 | 93.8 | 0.5 | -0.51 | 0.61 | 0.71 | 2.97 | 2.9 | 0.003 | 0.68 | 0.0 | 0.04 | 16.16 | 0.00 | 2.336 | 8.18 | 3.88 | 3.8 | 96.2 | 0.0 | -0.58 | 1.15 | 0.63 | 0.75 | 2.83 | 3116 | 396 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BZo | 16344 | 2024-03-10 | 2022-12-15 | 3.5 | 3.72 | 3.51 | 3.7 | 0.005 | 0.73 | 1.0 | 0.05 | 16.41 | 0.01 | 2.231 | 13.28 | 0.99 | 5.6 | 94.2 | 0.2 | -1.51 | 0.64 | 0.75 | 1.73 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 16.98 | 0.00 | 2.254 | 9.10 | 3.97 | 4.1 | 95.9 | 0.0 | -0.86 | 0.32 | 0.63 | 0.75 | 1.27 | 4834 | 614 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDR | 4828 | 2024-03-10 | 2019-04-12 | 4.1 | 4.19 | 4.13 | 4.1 | 0.007 | 0.94 | 0.0 | 0.05 | 15.03 | 0.01 | 1.908 | 6.99 | 0.44 | 5.2 | 94.6 | 0.2 | -4.22 | 0.67 | 0.74 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 14.01 | 0.00 | 1.906 | 12.77 | 0.02 | 4.3 | 95.6 | 0.1 | -0.31 | 1.29 | 0.69 | 0.78 | — | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RDT | 4830 | 2024-03-10 | 2019-04-12 | 3.4 | 3.29 | — | 3.4 | 0.011 | 1.02 | 1.0 | 0.06 | 15.18 | 0.01 | 2.058 | 6.06 | 0.60 | 5.7 | 94.0 | 0.3 | -4.05 | 0.68 | 0.83 | 2.56 | 3.4 | 0.003 | 0.60 | 0.0 | 0.04 | 16.34 | 0.00 | 1.902 | 10.32 | 2.49 | 4.1 | 95.8 | 0.1 | 0.03 | 2.40 | 0.70 | 0.85 | 2.01 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7UH6 | 26505 | 2024-03-10 | 2022-03-25 | 3.44 | 4.04 | 3.47 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 10.58 | 0.00 | 2.012 | 6.13 | 0.31 | 1.7 | 98.3 | 0.0 | 0.84 | 0.49 | 0.80 | 2.18 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 12.41 | 0.00 | 2.191 | 10.38 | 0.93 | 1.2 | 98.8 | 0.0 | 1.39 | 1.04 | 0.51 | 0.83 | 1.86 | 3095 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7UG0 | 26482 | 2024-03-10 | 2022-03-23 | 2.55 | 3.24 | 2.49 | 3.1 | 0.002 | 0.45 | 0.0 | 0.04 | 11.57 | 0.00 | 2.287 | 2.34 | 0.00 | 1.0 | 99.0 | 0.0 | 2.00 | 0.56 | 0.90 | 3.59 | 3.0 | 0.003 | 0.45 | 0.0 | 0.04 | 12.64 | 0.00 | 2.212 | 4.68 | 0.62 | 0.7 | 99.3 | 0.0 | 3.98 | 1.26 | 0.53 | 0.87 | 2.05 | 3126 | 418 | 1 | 0 | 3 | 4 | 0 | logfile |
✔ | 6RDH | 4818 | 2024-03-10 | 2019-04-12 | 3.0 | 3.16 | — | 3.2 | 0.010 | 1.01 | 1.0 | 0.06 | 14.16 | 0.01 | 2.025 | 5.62 | 0.34 | 5.0 | 94.8 | 0.2 | -3.87 | 0.72 | 0.85 | 3.15 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 16.08 | 0.00 | 1.955 | 9.83 | 1.94 | 3.8 | 96.1 | 0.1 | 0.24 | 1.17 | 0.73 | 0.87 | 2.50 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7UH3 | 26504 | 2024-03-10 | 2022-03-25 | 2.99 | 3.63 | 2.98 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 10.05 | 0.00 | 1.909 | 4.09 | 0.00 | 2.0 | 98.0 | 0.0 | 0.91 | 0.48 | 0.84 | 2.83 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 13.95 | 0.00 | 2.241 | 8.18 | 2.79 | 2.7 | 97.3 | 0.0 | 1.68 | 1.34 | 0.49 | 0.86 | 1.22 | 3096 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 6RD9 | 4810 | 2024-03-10 | 2019-04-12 | 3.0 | 3.00 | — | 3.1 | 0.014 | 1.11 | 0.0 | 0.07 | 14.33 | 0.01 | 1.876 | 6.07 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.71 | 0.84 | 3.64 | 3.1 | 0.004 | 0.64 | 0.0 | 0.04 | 15.97 | 0.00 | 1.873 | 9.62 | 1.78 | 3.6 | 96.3 | 0.1 | 0.34 | 0.46 | 0.75 | 0.87 | 2.85 | 53776 | 7103 | 41 | 0 | 11 | 28 | 0 | logfile |
✔ | 8HBW | 34645 | 2024-03-10 | 2022-10-31 | 2.57 | 2.69 | 2.51 | 2.7 | 0.010 | 1.05 | 0.0 | 0.05 | 16.26 | 0.01 | 2.199 | 7.29 | 0.00 | 2.2 | 97.8 | 0.0 | 1.60 | 0.63 | 0.87 | 4.58 | 2.7 | 0.003 | 0.54 | 0.0 | 0.04 | 16.66 | 0.00 | 2.141 | 7.75 | 3.26 | 2.2 | 97.8 | 0.0 | 2.98 | 1.22 | 0.58 | 0.87 | 3.92 | 3309 | 414 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 6RE0 | 4837 | 2024-03-10 | 2019-04-12 | 3.6 | 3.72 | 3.63 | 3.7 | 0.009 | 0.96 | 1.0 | 0.06 | 15.00 | 0.01 | 1.846 | 6.04 | 0.43 | 5.4 | 94.4 | 0.2 | -4.22 | 0.64 | 0.75 | 1.61 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.59 | 0.00 | 1.977 | 11.84 | 2.49 | 3.9 | 96.0 | 0.1 | -0.04 | 0.65 | 0.66 | 0.79 | 1.32 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 7UGV | 26497 | 2024-03-10 | 2022-03-25 | 2.94 | 3.59 | 2.94 | 3.4 | 0.003 | 0.57 | 0.0 | 0.04 | 9.13 | 0.00 | 2.111 | 3.29 | 0.00 | 0.7 | 99.3 | 0.0 | 2.34 | 0.50 | 0.85 | 4.24 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 12.80 | 0.00 | 2.204 | 5.80 | 1.23 | 0.5 | 99.5 | 0.0 | 2.94 | 1.29 | 0.52 | 0.87 | 2.81 | 3107 | 418 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7BC5 | 12139 | 2024-03-10 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.004 | 0.74 | 0.0 | 0.04 | 17.50 | 0.00 | 2.253 | 17.30 | 8.40 | 9.4 | 90.6 | 0.0 | -3.06 | 1.28 | 0.24 | 0.60 | 1.31 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WS7 | 32749 | 2024-03-10 | 2022-01-28 | 3.4 | 3.83 | — | 3.7 | 0.005 | 0.71 | 0.0 | 0.05 | 14.98 | 0.00 | 1.820 | 9.34 | 0.00 | 5.1 | 94.9 | 0.0 | -1.78 | 0.71 | 0.84 | 3.63 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 15.70 | 0.00 | 2.120 | 9.54 | 2.66 | 4.2 | 95.8 | 0.0 | -1.21 | 0.95 | 0.70 | 0.87 | 3.25 | 5209 | 671 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6RE5 | 4842 | 2024-03-10 | 2019-04-12 | 3.2 | 3.28 | — | 3.3 | 0.010 | 0.94 | 0.0 | 0.06 | 14.50 | 0.01 | 2.163 | 5.75 | 0.27 | 4.8 | 95.0 | 0.2 | -3.94 | 0.72 | 0.85 | 2.85 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 15.82 | 0.00 | 1.927 | 9.50 | 1.99 | 3.7 | 96.2 | 0.1 | 0.24 | 0.45 | 0.71 | 0.86 | 2.23 | 53720 | 7099 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 8EX9 | 28655 | 2024-03-10 | 2022-10-25 | 2.96 | 3.27 | 3.00 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 24.07 | 0.00 | 2.200 | 13.65 | 0.79 | 4.3 | 95.7 | 0.0 | -1.52 | 0.60 | 0.71 | 4.83 | 3.2 | 0.004 | 0.58 | 0.0 | 0.03 | 24.00 | 0.00 | 2.154 | 13.79 | 4.76 | 4.9 | 95.1 | 0.0 | -0.69 | 0.22 | 0.62 | 0.72 | 4.21 | 4199 | 166 | 4 | 139 | 0 | 0 | 0 | logfile |
✔ | 8Q3F | 18126 | 2024-03-10 | 2023-08-04 | 3.77 | 4.64 | 3.79 | 4.2 | 0.005 | 1.12 | 0.0 | 0.07 | 15.05 | 0.01 | 2.339 | 3.11 | 0.00 | 3.1 | 96.9 | 0.0 | -5.05 | 0.90 | 0.81 | 0.79 | 4.2 | 0.003 | 0.60 | 0.0 | 0.04 | 15.72 | 0.00 | 2.283 | 7.13 | 0.59 | 2.8 | 97.2 | 0.0 | 1.18 | 0.93 | 0.90 | 0.82 | 0.86 | 4599 | 578 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8XCW | 38257 | 2024-03-10 | 2023-12-10 | 2.87 | 3.04 | 1.36 | 3.0 | 0.009 | 1.10 | 0.0 | 0.06 | 16.21 | 0.01 | 2.363 | 4.68 | 3.54 | 2.2 | 97.8 | 0.0 | 1.28 | 0.49 | 0.89 | 4.44 | 3.0 | 0.004 | 0.51 | 0.0 | 0.04 | 16.81 | 0.00 | 2.215 | 6.94 | 2.95 | 2.4 | 97.6 | 0.0 | 2.00 | 0.42 | 0.49 | 0.92 | 3.47 | 3347 | 416 | 2 | 0 | 2 | 17 | 0 | logfile |
✘ | 7M3N | 23658 | 2024-03-10 | 2021-03-18 | 2.4 | 2.15 | 2.40 | 1.9 | 0.005 | 0.63 | 0.0 | 0.04 | 15.95 | 0.00 | 2.168 | 5.79 | 4.28 | 4.3 | 95.6 | 0.1 | -2.53 | 0.43 | 0.82 | 4.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6004 | 759 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAM | 24952 | 2024-03-10 | 2021-09-22 | 4.3 | 6.95 | 4.38 | 4.2 | 0.001 | 0.39 | 0.0 | 0.02 | 23.50 | 0.00 | 1.952 | 2.96 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.84 | 0.51 | — | 4.3 | 0.006 | 0.88 | 0.0 | 0.04 | 28.37 | 0.01 | 1.818 | 83.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 5.72 | 0.95 | 0.87 | — | 5399 | 0 | 1 | 169 | 0 | 0 | 1802 | logfile |