Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTV	24690	2023-08-09	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7Y7Z	33675	2023-08-09	2022-06-22	3.2	3.57	3.17	3.5	0.009	1.04	0.0	0.05	15.22	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.003	0.72	0.0	0.04	15.81	0.00	2.271	6.65	0.22	5.8	94.2	0.0	0.70	0.46	0.62	0.83	1.55	4303	532	1	0	5	0	0	logfile
✔	7W9F	32366	2023-08-09	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.63	0.0	0.04	16.02	0.00	2.165	10.00	0.55	4.0	96.0	0.0	-1.02	0.53	0.74	0.73	1.84	4856	625	3	0	0	0	0	logfile
✔	7KNU	22963	2023-08-09	2020-11-06	3.49	4.38	3.61	4.1	0.003	0.64	0.0	0.04	14.11	0.01	2.141	9.25	0.00	4.0	96.0	0.0	-1.59	0.59	0.76	1.17	4.1	0.003	0.71	0.0	0.04	15.88	0.00	2.203	12.95	0.24	4.4	95.6	0.0	-0.32	0.56	0.59	0.76	0.21	3809	467	3	0	0	0	0	logfile
✔	7K1V	22630	2023-08-09	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.72	0.0	0.04	13.84	0.00	2.160	21.48	0.00	7.3	92.7	0.0	-1.21	2.35	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	6J30	9773	2023-08-09	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✘	7P14	13155	2023-08-09	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	16.56	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3796	454	3	0	3	0	0	logfile
✘	7Y7W	33672	2023-08-09	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✔	7E39	30977	2023-08-09	2021-02-08	3.7	3.11	—	2.9	0.005	0.77	0.0	0.05	14.37	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.63	0.0	0.05	15.71	0.00	2.190	10.48	0.00	5.2	94.8	0.0	-2.15	0.43	0.49	0.73	2.16	3074	414	4	0	1	0	0	logfile
✔	8DL8	27499	2023-08-09	2022-07-07	3.0	4.08	3.15	3.6	0.003	0.53	0.0	0.04	16.82	0.01	1.612	6.82	3.54	2.5	97.3	0.1	2.02	0.75	0.82	1.99	3.7	0.004	0.79	0.0	0.04	16.83	0.00	1.980	11.36	4.96	3.3	96.5	0.1	2.41	0.54	0.73	0.83	2.29	6208	877	5	0	2	1	0	logfile
✔	8DEP	27394	2023-08-09	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	7YHQ	33836	2023-08-09	2022-07-14	3.9	3.34	3.84	3.3	0.005	0.91	0.0	0.06	23.63	0.01	2.249	15.40	2.00	8.6	91.4	0.0	-0.58	0.74	0.72	0.99	3.2	0.003	0.69	0.0	0.04	23.59	0.00	2.143	16.30	0.86	9.1	90.9	0.0	-0.74	0.65	0.74	0.74	0.99	4065	393	4	42	2	0	0	logfile
✔	7WEF	32449	2023-08-09	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.9	0.003	0.60	0.0	0.04	14.51	0.00	2.184	7.54	0.56	5.4	94.6	0.0	-1.12	0.37	0.55	0.76	2.05	3328	432	3	0	0	0	0	logfile
✔	7KNT	22962	2023-08-09	2020-11-06	3.15	4.00	3.32	3.7	0.004	0.75	0.0	0.05	14.56	0.00	2.116	11.51	0.74	3.6	96.4	0.0	-0.48	0.58	0.75	1.64	3.8	0.003	0.68	0.0	0.04	16.11	0.00	2.240	12.59	0.49	3.2	96.8	0.0	0.60	0.45	0.57	0.76	0.61	3716	455	2	0	0	0	0	logfile
✔	6o84	0650	2023-08-09	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.004	0.78	0.0	0.04	16.35	0.00	2.131	8.82	0.16	7.3	92.7	0.0	1.35	1.28	0.61	0.82	2.66	6224	712	2	0	118	0	0	logfile
✔	6NT7	0504	2023-08-09	2019-01-28	4.0	4.27	—	4.1	0.008	0.90	0.0	0.05	14.16	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.004	0.66	0.0	0.04	15.70	0.00	2.190	9.30	0.39	3.2	96.8	0.0	1.15	1.19	0.75	0.85	—	4729	588	3	0	1	0	0	logfile
✔	7VoJ	32050	2023-08-09	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.002	0.56	0.0	0.03	16.62	0.00	1.924	4.63	2.02	2.9	97.1	0.0	3.11	2.16	0.60	0.82	1.75	6318	800	4	0	6	0	0	logfile
✔	6J2Q	9771	2023-08-09	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	7TNX	26022	2023-08-09	2022-01-22	3.54	3.76	—	3.8	0.011	1.08	0.0	0.06	13.31	0.00	2.247	6.37	0.17	7.7	92.2	0.2	-2.75	0.70	0.80	2.39	3.8	0.003	0.61	0.0	0.04	15.27	0.00	2.173	8.76	0.51	7.7	92.3	0.0	-0.15	0.50	0.67	0.78	2.33	5753	647	4	23	2	0	0	logfile
✘	7SWP	25478	2023-08-09	2021-11-20	3.8	3.74	—	4.0	0.008	0.92	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3372	436	3	0	0	0	0	logfile

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