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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6W6M | 21559 | 2023-04-19 | 2020-03-17 | 2.7 | 2.83 | 2.64 | 2.8 | 0.008 | 1.02 | 14.0 | 0.06 | 12.30 | 0.01 | 1.953 | 13.25 | 2.97 | 7.8 | 92.2 | 0.0 | -3.02 | 0.62 | 0.73 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43638 | 5768 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZNL | 11313 | 2023-04-19 | 2020-07-06 | 3.8 | 4.07 | 3.64 | 3.8 | 0.014 | 1.87 | 3.0 | 0.09 | 14.11 | 0.00 | 1.790 | 2.76 | 0.02 | 5.8 | 94.0 | 0.2 | -2.54 | 0.78 | 0.70 | 1.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52864 | 7001 | 34 | 0 | 13 | 0 | 0 | logfile |
✔ | 8E4o | 27894 | 2023-04-19 | 2022-08-18 | 3.43 | 3.87 | 3.39 | 3.6 | 0.002 | 0.44 | 0.0 | 0.03 | 11.67 | 0.01 | 2.257 | 5.45 | 0.45 | 1.8 | 98.2 | 0.0 | 2.99 | 0.68 | 0.73 | 2.38 | 3.7 | 0.003 | 0.66 | 0.0 | 0.03 | 13.35 | 0.00 | 2.024 | 6.81 | 0.19 | 3.0 | 97.0 | 0.0 | 2.90 | 0.72 | 0.72 | 0.80 | 1.84 | 53496 | 3588 | 8 | 0 | 4 | 0 | 26024 | logfile |
✔ | 7XH8 | 33191 | 2023-04-19 | 2022-04-07 | 2.99 | 3.75 | 3.32 | 3.6 | 0.014 | 1.81 | 0.0 | 0.09 | 13.61 | 0.03 | 2.472 | 0.80 | 0.88 | 3.5 | 95.5 | 1.0 | -1.88 | 0.61 | 0.58 | 1.19 | 3.3 | 0.003 | 0.85 | 0.0 | 0.04 | 15.31 | 0.00 | 2.111 | 19.43 | 4.09 | 6.0 | 94.0 | 0.0 | -0.67 | 1.99 | 0.67 | 0.74 | 1.39 | 3161 | 404 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FU8 | 4319 | 2023-04-19 | 2018-02-26 | 3.2 | 4.43 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 4.1 | 0.004 | 0.85 | 0.0 | 0.04 | 15.02 | 0.00 | 2.243 | 16.86 | 0.00 | 11.2 | 87.5 | 1.2 | -1.85 | 3.09 | 0.23 | 0.62 | -0.89 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 7BC5 | 12139 | 2023-04-19 | 2020-12-18 | 3.1 | 3.06 | 3.11 | 3.1 | 0.005 | 1.05 | 0.0 | 0.05 | 15.92 | 0.01 | 2.314 | 7.83 | 0.76 | 8.2 | 91.8 | 0.0 | -5.64 | 0.23 | 0.62 | 0.92 | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.04 | 0.00 | 2.243 | 14.42 | 0.76 | 7.5 | 92.5 | 0.0 | -2.75 | 1.30 | 0.23 | 0.58 | 0.92 | 1200 | 161 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RDN | 4824 | 2023-04-19 | 2019-04-12 | 3.2 | 3.31 | 3.24 | 3.3 | 0.011 | 1.02 | 0.0 | 0.06 | 14.44 | 0.01 | 2.023 | 6.09 | 0.41 | 5.2 | 94.6 | 0.2 | -3.89 | 0.69 | 0.82 | 2.67 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.83 | 0.00 | 1.997 | 10.29 | 0.30 | 4.0 | 95.9 | 0.1 | 0.26 | 1.20 | 0.70 | 0.85 | 2.16 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6RDo | 4825 | 2023-04-19 | 2019-04-12 | 3.1 | 3.05 | — | 3.2 | 0.011 | 1.02 | 0.0 | 0.06 | 14.44 | 0.01 | 2.023 | 6.09 | 0.41 | 5.2 | 94.6 | 0.2 | -3.89 | 0.71 | 0.84 | 3.15 | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 15.86 | 0.00 | 1.865 | 9.84 | 0.27 | 4.5 | 95.3 | 0.2 | 0.13 | 1.16 | 0.72 | 0.87 | 2.63 | 53748 | 7103 | 37 | 0 | 11 | 0 | 0 | logfile |
✔ | 6W1N | 21513 | 2023-04-19 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.15 | 0.00 | 2.112 | 11.82 | 0.29 | 2.8 | 97.2 | 0.0 | 0.86 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 7KKK | 22907 | 2023-04-19 | 2020-10-27 | 3.03 | 3.38 | 3.82 | 3.3 | 0.021 | 1.74 | 3.0 | 0.12 | 10.44 | 0.01 | 2.364 | 0.75 | 0.21 | 1.8 | 98.2 | 0.0 | 0.60 | 0.63 | 0.82 | 3.30 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 14.50 | 0.00 | 1.873 | 4.96 | 0.28 | 1.9 | 98.1 | 0.0 | 0.57 | 1.49 | 0.62 | 0.84 | 3.19 | 52320 | 3360 | 21 | 0 | 54 | 0 | 25449 | logfile |
✔ | 7WP0 | 32665 | 2023-04-19 | 2022-01-22 | 3.71 | 3.94 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.06 | 14.49 | 0.01 | 2.281 | 5.81 | 0.59 | 8.5 | 91.5 | 0.0 | -4.57 | 0.65 | 0.80 | 3.41 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.95 | 0.00 | 2.286 | 10.65 | 0.00 | 8.0 | 92.0 | 0.0 | -1.94 | 0.56 | 0.64 | 0.79 | 2.56 | 3174 | 407 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6MSD | 9217 | 2023-04-19 | 2018-10-16 | 3.2 | 3.65 | — | 3.0 | 0.007 | 1.05 | 2.0 | 0.06 | 11.55 | 0.01 | 2.019 | 5.69 | 0.50 | 8.3 | 91.5 | 0.3 | -5.07 | 0.84 | 0.81 | 2.24 | 3.0 | 0.004 | 0.76 | 0.0 | 0.04 | 14.33 | 0.00 | 1.854 | 13.86 | 0.34 | 7.9 | 92.0 | 0.1 | -0.89 | 0.79 | 0.86 | 0.87 | 1.84 | 105426 | 13526 | 55 | 0 | 12 | 0 | 0 | logfile |
✔ | 7W38 | 32273 | 2023-04-19 | 2021-11-25 | 3.1 | 4.31 | — | 2.8 | 0.004 | 0.80 | 0.0 | 0.05 | 13.91 | 0.01 | 1.750 | 5.47 | 0.18 | 5.7 | 94.2 | 0.1 | -0.59 | 0.84 | 0.80 | 2.24 | 2.8 | 0.003 | 0.57 | 0.0 | 0.04 | 15.11 | 0.00 | 1.881 | 9.56 | 0.22 | 5.6 | 94.4 | 0.1 | 0.87 | 0.33 | 0.88 | 0.89 | 1.76 | 106178 | 13539 | 55 | 0 | 13 | 0 | 0 | logfile |
✔ | 7W37 | 32272 | 2023-04-19 | 2021-11-25 | 3.0 | 4.26 | — | 2.8 | 0.004 | 0.80 | 0.0 | 0.05 | 13.99 | 0.01 | 1.712 | 5.02 | 0.15 | 5.8 | 94.1 | 0.1 | -0.60 | 0.85 | 0.84 | 2.30 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 15.35 | 0.00 | 1.813 | 9.96 | 0.76 | 6.3 | 93.7 | 0.1 | 0.87 | 0.33 | 0.88 | 0.89 | 1.95 | 106025 | 13527 | 54 | 0 | 13 | 0 | 0 | logfile |
✔ | 7V0X | 26952 | 2023-04-19 | 2022-05-11 | 3.0 | 2.83 | 2.92 | 2.9 | 0.002 | 0.63 | 0.0 | 0.04 | 19.06 | 0.01 | 2.211 | 6.52 | 5.05 | 4.0 | 96.0 | 0.0 | 0.72 | 0.61 | 0.88 | 3.78 | 2.9 | 0.002 | 0.53 | 0.0 | 0.04 | 19.08 | 0.00 | 2.176 | 7.23 | 4.38 | 4.9 | 95.1 | 0.0 | 1.77 | 0.47 | 0.60 | 0.88 | 3.17 | 2818 | 375 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2023-04-19 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.41 | 0.00 | 2.466 | 11.77 | 0.00 | 9.0 | 91.0 | 0.0 | -0.07 | 3.42 | 0.60 | 0.74 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV6 | 32139 | 2023-04-19 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.04 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 17.06 | 0.00 | 2.195 | 6.88 | 0.00 | 3.3 | 96.7 | 0.0 | 2.95 | 0.67 | 0.65 | 0.86 | 1.49 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JV2 | 22491 | 2023-04-19 | 2020-08-20 | 3.5 | 3.49 | 3.41 | 3.7 | 0.015 | 1.39 | 0.0 | 0.08 | 11.43 | 0.01 | 2.587 | 0.00 | 1.32 | 3.6 | 96.4 | 0.0 | 0.82 | 0.69 | 0.74 | 3.48 | 3.7 | 0.004 | 0.72 | 0.0 | 0.04 | 14.90 | 0.00 | 2.223 | 14.03 | 0.44 | 5.5 | 94.5 | 0.0 | -0.83 | 1.27 | 0.71 | 0.77 | 3.76 | 2151 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QES | 13939 | 2023-04-19 | 2021-12-03 | 2.6 | 3.37 | — | 3.0 | 0.006 | 0.86 | 0.0 | 0.04 | 13.93 | 0.00 | 2.122 | 3.25 | 0.00 | 3.9 | 96.1 | 0.0 | -0.99 | 0.77 | 0.86 | 3.39 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 15.49 | 0.00 | 2.170 | 4.71 | 1.22 | 3.4 | 96.6 | 0.0 | 2.50 | 1.24 | 0.78 | 0.87 | 2.88 | 3076 | 366 | 6 | 0 | 10 | 14 | 0 | logfile |
✔ | 7QEU | 13941 | 2023-04-19 | 2021-12-03 | 2.7 | 3.39 | — | 3.0 | 0.007 | 0.80 | 0.0 | 0.04 | 13.54 | 0.00 | 2.135 | 3.49 | 0.00 | 2.6 | 97.4 | 0.0 | 0.76 | 0.78 | 0.87 | 3.01 | 3.0 | 0.003 | 0.52 | 0.0 | 0.04 | 14.96 | 0.00 | 2.155 | 3.83 | 1.55 | 2.0 | 98.0 | 0.0 | 3.38 | 0.40 | 0.79 | 0.88 | 2.92 | 3002 | 359 | 6 | 0 | 6 | 7 | 0 | logfile |