Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6W6M	21559	2023-04-19	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.73	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43638	5768	14	0	0	0	0	logfile
✘	6ZNL	11313	2023-04-19	2020-07-06	3.8	4.07	3.64	3.8	0.014	1.87	3.0	0.09	14.11	0.00	1.790	2.76	0.02	5.8	94.0	0.2	-2.54	0.78	0.70	1.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52864	7001	34	0	13	0	0	logfile
✔	8E4o	27894	2023-04-19	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	7XH8	33191	2023-04-19	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.85	0.0	0.04	15.31	0.00	2.111	19.43	4.09	6.0	94.0	0.0	-0.67	1.99	0.67	0.74	1.39	3161	404	3	0	0	0	0	logfile
✔	6FU8	4319	2023-04-19	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7BC5	12139	2023-04-19	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.72	0.0	0.04	17.04	0.00	2.243	14.42	0.76	7.5	92.5	0.0	-2.75	1.30	0.23	0.58	0.92	1200	161	1	0	0	0	0	logfile
✔	6RDN	4824	2023-04-19	2019-04-12	3.2	3.31	3.24	3.3	0.011	1.02	0.0	0.06	14.44	0.01	2.023	6.09	0.41	5.2	94.6	0.2	-3.89	0.69	0.82	2.67	3.3	0.003	0.61	0.0	0.04	15.83	0.00	1.997	10.29	0.30	4.0	95.9	0.1	0.26	1.20	0.70	0.85	2.16	53748	7103	37	0	11	0	0	logfile
✔	6RDo	4825	2023-04-19	2019-04-12	3.1	3.05	—	3.2	0.011	1.02	0.0	0.06	14.44	0.01	2.023	6.09	0.41	5.2	94.6	0.2	-3.89	0.71	0.84	3.15	3.2	0.004	0.62	0.0	0.04	15.86	0.00	1.865	9.84	0.27	4.5	95.3	0.2	0.13	1.16	0.72	0.87	2.63	53748	7103	37	0	11	0	0	logfile
✔	6W1N	21513	2023-04-19	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.50	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.76	0.0	0.04	14.15	0.00	2.112	11.82	0.29	2.8	97.2	0.0	0.86	0.75	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	7KKK	22907	2023-04-19	2020-10-27	3.03	3.38	3.82	3.3	0.021	1.74	3.0	0.12	10.44	0.01	2.364	0.75	0.21	1.8	98.2	0.0	0.60	0.63	0.82	3.30	3.3	0.002	0.57	0.0	0.04	14.50	0.00	1.873	4.96	0.28	1.9	98.1	0.0	0.57	1.49	0.62	0.84	3.19	52320	3360	21	0	54	0	25449	logfile
✔	7WP0	32665	2023-04-19	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.49	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.003	0.66	0.0	0.04	15.95	0.00	2.286	10.65	0.00	8.0	92.0	0.0	-1.94	0.56	0.64	0.79	2.56	3174	407	3	0	1	0	0	logfile
✔	6MSD	9217	2023-04-19	2018-10-16	3.2	3.65	—	3.0	0.007	1.05	2.0	0.06	11.55	0.01	2.019	5.69	0.50	8.3	91.5	0.3	-5.07	0.84	0.81	2.24	3.0	0.004	0.76	0.0	0.04	14.33	0.00	1.854	13.86	0.34	7.9	92.0	0.1	-0.89	0.79	0.86	0.87	1.84	105426	13526	55	0	12	0	0	logfile
✔	7W38	32273	2023-04-19	2021-11-25	3.1	4.31	—	2.8	0.004	0.80	0.0	0.05	13.91	0.01	1.750	5.47	0.18	5.7	94.2	0.1	-0.59	0.84	0.80	2.24	2.8	0.003	0.57	0.0	0.04	15.11	0.00	1.881	9.56	0.22	5.6	94.4	0.1	0.87	0.33	0.88	0.89	1.76	106178	13539	55	0	13	0	0	logfile
✔	7W37	32272	2023-04-19	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	13.99	0.01	1.712	5.02	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.004	0.64	0.0	0.04	15.35	0.00	1.813	9.96	0.76	6.3	93.7	0.1	0.87	0.33	0.88	0.89	1.95	106025	13527	54	0	13	0	0	logfile
✔	7V0X	26952	2023-04-19	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	6R23	4708	2023-04-19	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.61	0.0	0.04	16.41	0.00	2.466	11.77	0.00	9.0	91.0	0.0	-0.07	3.42	0.60	0.74	—	1518	182	2	0	0	0	0	logfile
✔	7VV6	32139	2023-04-19	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.004	0.65	0.0	0.04	17.06	0.00	2.195	6.88	0.00	3.3	96.7	0.0	2.95	0.67	0.65	0.86	1.49	2227	271	1	0	2	0	0	logfile
✔	7JV2	22491	2023-04-19	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.90	0.00	2.223	14.03	0.44	5.5	94.5	0.0	-0.83	1.27	0.71	0.77	3.76	2151	282	3	0	0	0	0	logfile
✔	7QES	13939	2023-04-19	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.64	0.0	0.04	15.49	0.00	2.170	4.71	1.22	3.4	96.6	0.0	2.50	1.24	0.78	0.87	2.88	3076	366	6	0	10	14	0	logfile
✔	7QEU	13941	2023-04-19	2021-12-03	2.7	3.39	—	3.0	0.007	0.80	0.0	0.04	13.54	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.52	0.0	0.04	14.96	0.00	2.155	3.83	1.55	2.0	98.0	0.0	3.38	0.40	0.79	0.88	2.92	3002	359	6	0	6	7	0	logfile

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