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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DZY | 8942 | 2023-09-28 | 2018-07-05 | 4.1 | 4.52 | 4.39 | 4.6 | 0.015 | 0.95 | 4.0 | 0.17 | 8.53 | 0.01 | 1.386 | 9.20 | 1.32 | 4.7 | 95.2 | 0.1 | -2.99 | 0.42 | 0.61 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.01 | 0.00 | 2.195 | 16.87 | 0.00 | 4.8 | 95.1 | 0.1 | -0.54 | 1.88 | 0.44 | 0.68 | — | 7842 | 988 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7WQX | 32715 | 2023-09-27 | 2022-01-26 | 2.7 | 2.26 | — | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 8.53 | 0.00 | 2.181 | 9.03 | 2.56 | 6.0 | 94.0 | 0.0 | -3.61 | 0.73 | 0.65 | 2.93 | 3.2 | 0.003 | 0.77 | 0.0 | 0.05 | 14.82 | 0.00 | 2.167 | 15.01 | 2.56 | 8.6 | 91.4 | 0.0 | -1.89 | 1.35 | 0.76 | 0.69 | 2.18 | 4022 | 501 | 1 | 0 | 9 | 0 | 0 | logfile |
✔ | 6VN7 | 21249 | 2023-09-29 | 2020-01-29 | 3.2 | 3.53 | — | 3.7 | 0.004 | 0.90 | 0.0 | 0.07 | 8.54 | 0.01 | 2.254 | 4.22 | 0.00 | 2.8 | 97.2 | 0.0 | -2.38 | 0.66 | 0.78 | 2.53 | 3.7 | 0.005 | 0.65 | 0.0 | 0.04 | 14.31 | 0.00 | 2.106 | 8.15 | 0.44 | 2.3 | 97.7 | 0.0 | 0.87 | 0.75 | 0.56 | 0.74 | 2.05 | 8620 | 1052 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 7BZX | 30262 | 2023-09-28 | 2020-04-28 | 4.0 | 4.19 | — | 3.2 | 0.019 | 2.22 | 9.0 | 0.12 | 8.56 | 0.01 | 2.485 | 2.40 | 0.00 | 6.6 | 92.1 | 1.3 | -2.90 | 0.47 | 0.25 | — | 2.8 | 0.006 | 1.18 | 0.0 | 0.05 | 9.20 | 0.01 | 2.035 | 27.91 | 0.00 | 24.1 | 75.8 | 0.1 | -4.93 | 2.97 | 0.75 | 0.58 | — | 5652 | 1154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CZ6 | 30507 | 2023-09-27 | 2020-09-07 | 4.1 | 4.04 | — | 4.1 | 0.009 | 1.62 | 0.0 | 0.05 | 8.57 | 0.01 | 1.047 | 61.25 | 0.00 | 8.1 | 91.9 | 0.0 | -1.66 | 0.68 | 0.64 | — | 4.1 | 0.004 | 0.84 | 0.0 | 0.05 | 11.13 | 0.01 | 2.108 | 15.25 | 0.00 | 5.5 | 94.5 | 0.0 | -2.13 | 0.91 | 0.65 | 0.72 | — | 4535 | 630 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LJC | 23390 | 2023-09-29 | 2021-01-28 | 3.0 | 2.23 | — | 2.1 | 0.005 | 1.00 | 0.0 | 0.07 | 8.58 | 0.01 | 2.282 | 5.25 | 0.11 | 2.8 | 97.2 | 0.0 | -1.06 | 0.78 | 0.81 | 3.11 | 2.0 | 0.003 | 0.62 | 0.0 | 0.04 | 14.86 | 0.00 | 2.142 | 11.14 | 1.79 | 2.2 | 97.8 | 0.0 | 0.95 | 1.22 | 0.75 | 0.78 | 2.96 | 8544 | 1040 | 6 | 0 | 14 | 0 | 0 | logfile |
✔ | 7F16 | 31405 | 2023-09-29 | 2021-06-08 | 2.8 | 3.48 | — | 3.3 | 0.004 | 0.84 | 0.0 | 0.06 | 8.59 | 0.01 | 2.240 | 4.43 | 0.00 | 1.7 | 98.3 | 0.0 | 0.51 | 0.66 | 0.75 | 1.95 | 3.3 | 0.004 | 0.68 | 0.0 | 0.04 | 15.09 | 0.00 | 2.130 | 12.86 | 2.73 | 2.9 | 97.1 | 0.0 | 1.06 | 0.96 | 0.64 | 0.76 | 2.24 | 9488 | 1163 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 7VX5 | 32169 | 2023-09-28 | 2021-11-12 | 3.8 | 4.03 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 8.62 | 0.00 | 2.246 | 7.43 | 0.14 | 1.0 | 99.0 | 0.0 | -2.69 | 0.56 | 0.68 | 2.10 | 4.0 | 0.004 | 0.68 | 0.0 | 0.04 | 14.81 | 0.00 | 2.165 | 12.25 | 0.43 | 2.4 | 97.6 | 0.0 | 0.48 | 1.40 | 0.64 | 0.77 | 2.23 | 6487 | 791 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8EFQ | 28088 | 2023-09-28 | 2022-09-08 | 3.3 | 3.58 | 3.24 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 8.64 | 0.01 | 2.298 | 3.12 | 0.00 | 1.4 | 98.6 | 0.0 | -1.52 | 0.60 | 0.72 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7046 | 892 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8F7X | 28912 | 2023-09-29 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 14.55 | 0.00 | 2.042 | 6.42 | 0.62 | 2.0 | 98.0 | 0.0 | 1.46 | 1.10 | 0.62 | 0.85 | 2.47 | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XoC | 33344 | 2023-09-28 | 2022-05-01 | 3.0 | 2.28 | 3.19 | 2.1 | 0.002 | 0.49 | 0.0 | 0.04 | 8.65 | 0.00 | 2.149 | 5.34 | 0.00 | 2.1 | 97.9 | 0.0 | -2.11 | 0.73 | 0.69 | 2.72 | 2.1 | 0.003 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 2.079 | 8.76 | 2.35 | 2.9 | 97.1 | 0.0 | 0.79 | 1.11 | 0.77 | 0.82 | 3.00 | 6432 | 786 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7JVR | 22511 | 2023-09-29 | 2020-08-22 | 2.8 | 2.21 | — | 2.0 | 0.012 | 0.93 | 0.0 | 0.05 | 8.66 | 0.01 | 2.235 | 4.75 | 0.00 | 2.8 | 97.2 | 0.0 | -0.85 | 0.74 | 0.74 | 2.70 | 2.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.58 | 0.00 | 2.052 | 14.26 | 2.88 | 2.5 | 97.5 | 0.0 | 0.57 | 0.66 | 0.75 | 0.77 | 2.68 | 8872 | 1126 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2023-09-27 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 18.11 | 0.00 | 2.225 | 5.17 | 3.95 | 1.7 | 98.3 | 0.0 | 0.99 | 1.75 | 0.21 | 0.81 | 3.63 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WK7 | 32561 | 2023-09-30 | 2022-01-08 | 3.49 | 2.78 | — | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 8.68 | 0.00 | 2.206 | 5.49 | 3.12 | 4.5 | 95.4 | 0.1 | -3.90 | 0.77 | 0.76 | 2.02 | 3.1 | 0.004 | 0.78 | 0.0 | 0.05 | 14.91 | 0.00 | 2.207 | 15.16 | 0.98 | 6.4 | 93.5 | 0.1 | -1.05 | 0.77 | 0.79 | 0.80 | 2.02 | 10206 | 1330 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2023-09-27 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2023-09-29 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 11.92 | 0.01 | 2.072 | 21.86 | 0.00 | 6.4 | 93.5 | 0.1 | -0.40 | 2.04 | 0.46 | 0.56 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAB | 21135 | 2023-09-27 | 2019-12-17 | 4.9 | 6.51 | — | 6.8 | 0.005 | 0.91 | 0.0 | 0.06 | 8.70 | 0.01 | 2.264 | 14.98 | 0.00 | 6.8 | 93.2 | 0.0 | -3.84 | 0.71 | 0.69 | — | 6.6 | 0.004 | 0.69 | 0.0 | 0.04 | 4.96 | 0.00 | 2.132 | 7.42 | 0.00 | 8.6 | 91.4 | 0.0 | -0.31 | 2.71 | 0.73 | 0.69 | — | 4642 | 938 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JVQ | 22510 | 2023-09-29 | 2020-08-22 | 3.0 | 3.32 | — | 3.3 | 0.004 | 0.92 | 0.0 | 0.06 | 8.71 | 0.01 | 2.268 | 4.24 | 0.00 | 3.1 | 96.9 | 0.0 | -2.33 | 0.61 | 0.76 | 2.77 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 14.81 | 0.00 | 2.122 | 7.00 | 2.66 | 1.7 | 98.3 | 0.0 | 0.49 | 1.26 | 0.59 | 0.77 | 2.34 | 8485 | 1047 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 6U5H | 20646 | 2023-09-28 | 2019-08-27 | 4.0 | 3.67 | — | 3.7 | 0.005 | 1.07 | 0.0 | 0.06 | 8.74 | 0.01 | 2.234 | 9.36 | 0.39 | 13.6 | 86.4 | 0.0 | -5.23 | 0.41 | 0.68 | — | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.63 | 0.00 | 2.120 | 18.93 | 0.64 | 10.2 | 89.8 | 0.0 | -4.46 | 0.95 | 0.42 | 0.69 | — | 7326 | 954 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TNG | 10532 | 2023-09-28 | 2019-12-07 | 4.1 | 4.25 | 3.91 | 4.0 | 0.008 | 1.39 | 0.0 | 0.00 | 8.74 | 0.01 | 2.183 | 11.35 | 0.00 | 18.9 | 80.2 | 0.8 | -5.16 | 0.75 | 0.70 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.00 | 6.39 | 0.00 | 2.200 | 10.87 | 0.00 | 22.8 | 77.1 | 0.1 | -3.08 | 0.35 | 0.76 | 0.72 | — | 8240 | 2060 | 2 | 0 | 0 | 0 | 0 | logfile |