Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L54	0837	2023-04-26	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.71	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.002	0.61	0.0	0.04	13.82	0.00	1.920	66.76	0.39	10.3	89.7	0.0	-1.37	0.76	0.80	0.77	1.44	20387	2608	3	0	2	0	857	logfile
✔	7MVZ	24059	2023-04-27	2021-05-15	2.81	3.64	2.78	3.1	0.002	0.48	0.0	0.03	7.60	0.00	2.206	2.84	0.00	1.6	98.4	0.0	-1.11	0.80	0.67	0.58	3.2	0.004	0.66	0.0	0.04	14.27	0.00	1.969	15.82	2.27	4.4	95.6	0.0	0.87	1.86	0.84	0.76	1.43	26733	1707	3	0	0	0	13421	logfile
✔	7BZY	30263	2023-04-20	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.82	0.0	0.05	6.08	0.00	2.106	13.54	0.00	14.3	85.7	0.0	-3.30	1.23	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	8CTG	26989	2023-04-20	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile
✔	6D7L	7823	2023-04-21	2018-04-25	4.0	4.10	3.93	3.9	0.004	0.86	0.0	0.05	7.65	0.01	2.273	4.18	0.00	8.5	91.5	0.0	-3.90	0.73	0.72	—	3.9	0.004	0.88	0.0	0.04	15.24	0.00	2.179	17.08	0.98	11.4	88.6	0.0	-0.47	3.01	0.76	0.75	—	9172	1152	4	0	0	0	0	logfile
✔	7VXK	32182	2023-04-29	2021-11-12	3.7	4.06	—	3.9	0.002	0.50	0.0	0.04	7.67	0.00	2.235	7.48	0.00	3.8	96.1	0.1	-2.36	0.55	0.60	1.12	3.9	0.004	0.70	0.0	0.04	14.34	0.00	2.107	13.03	0.21	4.2	95.7	0.0	-0.14	1.67	0.62	0.74	1.33	30079	3814	4	0	0	0	0	logfile
✔	7VXM	32184	2023-04-29	2021-11-12	3.6	3.96	—	3.8	0.002	0.51	0.0	0.04	7.69	0.00	2.159	7.97	0.00	3.9	95.9	0.2	-2.41	0.49	0.54	0.82	3.8	0.003	0.66	0.0	0.04	14.30	0.00	2.086	11.95	0.24	3.5	96.5	0.0	-0.04	1.68	0.58	0.73	1.22	29901	3791	4	0	0	0	0	logfile
✔	7LRD	23495	2023-04-23	2021-02-16	3.22	4.04	3.18	3.2	0.003	0.48	0.0	0.04	7.70	0.00	1.795	4.48	0.25	1.3	98.7	0.0	2.71	0.82	0.76	2.88	3.2	0.004	0.52	0.0	0.04	10.53	0.00	2.010	7.20	0.13	2.0	98.0	0.1	2.44	1.19	0.90	0.88	2.64	14346	1766	8	0	8	0	0	logfile
✔	8EF6	28069	2023-04-22	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.03	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	3.1	0.003	0.58	0.0	0.04	13.52	0.00	2.120	7.98	0.08	1.4	98.6	0.0	1.89	1.30	0.60	0.82	2.94	11686	1439	9	0	12	0	0	logfile
✔	7QND	14075	2023-04-24	2021-12-20	3.4	3.55	—	3.4	0.003	0.46	0.0	0.04	7.75	0.00	2.210	4.79	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.71	0.0	0.04	13.71	0.00	2.126	11.53	0.56	1.6	98.4	0.0	1.18	3.38	0.76	0.87	3.50	16810	1995	19	0	33	0	0	logfile
✔	6XGC	22180	2023-04-24	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	7.79	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.197	11.45	0.05	3.6	96.4	0.0	0.02	1.31	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7TQV	26073	2023-04-24	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.56	0.0	0.04	12.72	0.00	2.213	8.13	0.33	3.7	96.3	0.0	-0.50	1.51	0.73	0.76	2.12	17792	2083	8	66	0	0	0	logfile
✔	7EU8	31309	2023-04-24	2021-05-16	4.07	4.11	—	3.6	0.002	0.42	0.0	0.10	7.80	0.00	2.206	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.002	0.62	0.0	0.06	8.46	0.00	2.129	7.57	0.00	3.8	96.0	0.2	0.14	1.37	0.79	0.69	—	18670	3010	8	0	8	0	0	logfile
✔	7DR6	30824	2023-04-21	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.05	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.91	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	8F7R	28908	2023-04-22	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	7.82	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.56	0.0	0.04	14.02	0.00	2.165	11.40	0.24	1.3	98.7	0.0	1.41	0.81	0.57	0.79	2.34	11697	1443	11	0	12	0	0	logfile
✔	7WKD	32565	2023-04-24	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.0	0.017	0.79	0.0	0.04	14.70	0.01	1.891	15.45	0.42	3.8	96.2	0.0	0.29	1.05	0.72	0.75	2.56	17515	1120	6	0	0	0	8712	logfile
✔	7XA3	33086	2023-04-21	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.17	0.00	2.192	9.41	2.38	3.4	96.6	0.0	1.61	1.17	0.78	0.78	2.75	9591	1220	6	0	0	0	0	logfile
✔	6PZi	20535	2023-04-20	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	7.87	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.003	0.66	0.0	0.04	7.97	0.00	2.154	7.80	0.00	3.6	96.4	0.0	1.80	0.57	0.68	0.84	—	7985	1412	1	0	1	0	0	logfile
✔	7LH3	23335	2023-04-21	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.62	0.0	0.04	10.77	0.00	2.289	10.84	0.00	3.5	96.5	0.0	1.90	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7VXD	32176	2023-04-29	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.52	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	4.3	0.003	0.73	0.0	0.04	14.17	0.00	2.102	16.36	0.45	4.0	96.0	0.0	-0.78	1.63	0.74	0.74	—	30194	3829	4	0	0	0	0	logfile

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