Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DZY	8942	2023-09-28	2018-07-05	4.1	4.52	4.39	4.6	0.015	0.95	4.0	0.17	8.53	0.01	1.386	9.20	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.77	0.0	0.04	13.01	0.00	2.195	16.87	0.00	4.8	95.1	0.1	-0.54	1.88	0.44	0.68	—	7842	988	6	0	4	0	0	logfile
✔	7WQX	32715	2023-09-27	2022-01-26	2.7	2.26	—	3.2	0.003	0.53	0.0	0.04	8.53	0.00	2.181	9.03	2.56	6.0	94.0	0.0	-3.61	0.73	0.65	2.93	3.2	0.003	0.77	0.0	0.05	14.82	0.00	2.167	15.01	2.56	8.6	91.4	0.0	-1.89	1.35	0.76	0.69	2.18	4022	501	1	0	9	0	0	logfile
✔	6VN7	21249	2023-09-29	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.54	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.005	0.65	0.0	0.04	14.31	0.00	2.106	8.15	0.44	2.3	97.7	0.0	0.87	0.75	0.56	0.74	2.05	8620	1052	7	0	10	0	0	logfile
✔	7BZX	30262	2023-09-28	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.8	0.006	1.18	0.0	0.05	9.20	0.01	2.035	27.91	0.00	24.1	75.8	0.1	-4.93	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	7CZ6	30507	2023-09-27	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.84	0.0	0.05	11.13	0.01	2.108	15.25	0.00	5.5	94.5	0.0	-2.13	0.91	0.65	0.72	—	4535	630	5	0	0	0	0	logfile
✔	7LJC	23390	2023-09-29	2021-01-28	3.0	2.23	—	2.1	0.005	1.00	0.0	0.07	8.58	0.01	2.282	5.25	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.62	0.0	0.04	14.86	0.00	2.142	11.14	1.79	2.2	97.8	0.0	0.95	1.22	0.75	0.78	2.96	8544	1040	6	0	14	0	0	logfile
✔	7F16	31405	2023-09-29	2021-06-08	2.8	3.48	—	3.3	0.004	0.84	0.0	0.06	8.59	0.01	2.240	4.43	0.00	1.7	98.3	0.0	0.51	0.66	0.75	1.95	3.3	0.004	0.68	0.0	0.04	15.09	0.00	2.130	12.86	2.73	2.9	97.1	0.0	1.06	0.96	0.64	0.76	2.24	9488	1163	7	0	10	0	0	logfile
✔	7VX5	32169	2023-09-28	2021-11-12	3.8	4.03	—	4.1	0.003	0.65	0.0	0.04	8.62	0.00	2.246	7.43	0.14	1.0	99.0	0.0	-2.69	0.56	0.68	2.10	4.0	0.004	0.68	0.0	0.04	14.81	0.00	2.165	12.25	0.43	2.4	97.6	0.0	0.48	1.40	0.64	0.77	2.23	6487	791	4	0	6	0	0	logfile
✘	8EFQ	28088	2023-09-28	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	0.0	0.05	8.64	0.01	2.298	3.12	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7046	892	6	0	2	0	0	logfile
✔	8F7X	28912	2023-09-29	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	3.3	0.003	0.61	0.0	0.04	14.55	0.00	2.042	6.42	0.62	2.0	98.0	0.0	1.46	1.10	0.62	0.85	2.47	8902	1145	6	0	0	0	0	logfile
✔	7XoC	33344	2023-09-28	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.49	0.0	0.04	8.65	0.00	2.149	5.34	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.1	0.003	0.66	0.0	0.04	16.10	0.00	2.079	8.76	2.35	2.9	97.1	0.0	0.79	1.11	0.77	0.82	3.00	6432	786	5	0	5	0	0	logfile
✔	7JVR	22511	2023-09-29	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.75	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.26	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	3JBS	6478	2023-09-27	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	7WK7	32561	2023-09-30	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.1	0.004	0.78	0.0	0.05	14.91	0.00	2.207	15.16	0.98	6.4	93.5	0.1	-1.05	0.77	0.79	0.80	2.02	10206	1330	4	0	2	0	0	logfile
✔	6XTB	10618	2023-09-27	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	6HD5	0201	2023-09-29	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	6VAB	21135	2023-09-27	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.004	0.69	0.0	0.04	4.96	0.00	2.132	7.42	0.00	8.6	91.4	0.0	-0.31	2.71	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	7JVQ	22510	2023-09-29	2020-08-22	3.0	3.32	—	3.3	0.004	0.92	0.0	0.06	8.71	0.01	2.268	4.24	0.00	3.1	96.9	0.0	-2.33	0.61	0.76	2.77	3.3	0.003	0.59	0.0	0.04	14.81	0.00	2.122	7.00	2.66	1.7	98.3	0.0	0.49	1.26	0.59	0.77	2.34	8485	1047	6	0	9	0	0	logfile
✔	6U5H	20646	2023-09-28	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.78	0.0	0.04	15.63	0.00	2.120	18.93	0.64	10.2	89.8	0.0	-4.46	0.95	0.42	0.69	—	7326	954	3	0	0	0	0	logfile
✔	6TNG	10532	2023-09-28	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.85	0.0	0.00	6.39	0.00	2.200	10.87	0.00	22.8	77.1	0.1	-3.08	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile

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