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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RTM | 24683 | 2023-11-14 | 2021-08-13 | 3.4 | 3.54 | 3.61 | 20.0 | 0.031 | 3.05 | 44.0 | 0.18 | 14.10 | 0.03 | 1.051 | 1.40 | 2.80 | 6.8 | 93.0 | 0.3 | -1.12 | 0.10 | 0.04 | 0.21 | 3.4 | 0.003 | 0.82 | 0.0 | 0.04 | 15.77 | 0.00 | 2.133 | 12.74 | 0.20 | 5.5 | 94.4 | 0.1 | 0.19 | 4.57 | 0.66 | 0.78 | 1.49 | 9161 | 1142 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2023-11-14 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 15.44 | 0.00 | 2.167 | 14.27 | 0.30 | 3.8 | 96.2 | 0.0 | 1.16 | 1.16 | 0.72 | 0.84 | 0.30 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPG | 14120 | 2023-11-14 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 6.89 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.10 | 0.00 | 2.137 | 11.18 | 0.11 | 3.0 | 97.0 | 0.0 | 1.12 | 0.84 | 0.88 | 0.76 | 0.33 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DFo | 27409 | 2023-11-18 | 2022-06-22 | 3.1 | 3.40 | 3.29 | 7.2 | 0.022 | 1.64 | 93.0 | 0.16 | 17.81 | 0.01 | 1.724 | 6.88 | 0.57 | 4.8 | 95.2 | 0.0 | -0.44 | 0.27 | 0.07 | 0.22 | 3.4 | 0.003 | 0.75 | 0.0 | 0.04 | 17.28 | 0.01 | 2.086 | 17.82 | 0.12 | 4.2 | 95.8 | 0.0 | -0.71 | 1.86 | 0.44 | 0.39 | 0.56 | 23861 | 2912 | 13 | 45 | 0 | 0 | 0 | logfile |
✔ | 6MWQ | 9277 | 2023-11-18 | 2018-10-30 | 3.0 | 3.33 | 2.89 | 3.1 | 0.001 | 0.36 | 0.0 | 0.04 | 4.66 | 0.00 | 2.321 | 4.19 | 0.13 | 11.0 | 87.5 | 1.5 | -4.81 | 0.54 | 0.39 | 0.22 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 13.43 | 0.00 | 2.152 | 8.38 | 1.78 | 4.1 | 95.7 | 0.2 | -1.12 | 1.34 | 0.78 | 0.87 | 1.94 | 22072 | 2873 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MiD | 23847 | 2023-11-14 | 2021-04-16 | 3.56 | 4.10 | — | 3.9 | 0.010 | 1.02 | 0.0 | 0.06 | 20.24 | 0.01 | 0.918 | 14.61 | 5.73 | 8.6 | 91.3 | 0.1 | -1.30 | 0.76 | 0.66 | 0.22 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 19.99 | 0.00 | 2.160 | 11.77 | 0.11 | 6.2 | 93.8 | 0.0 | 0.11 | 1.24 | 0.82 | 0.80 | 0.87 | 9789 | 1080 | 11 | 57 | 6 | 0 | 0 | logfile |
✔ | 7CHH | 30374 | 2023-11-20 | 2020-07-05 | 3.49 | 2.44 | — | 20.0 | 0.007 | 1.10 | 0.0 | 0.06 | 15.16 | 0.01 | 2.182 | 4.90 | 3.56 | 5.2 | 94.7 | 0.1 | -2.03 | 0.17 | 0.02 | 0.23 | 2.2 | 0.012 | 1.23 | 0.0 | 0.06 | 16.28 | 0.01 | 1.926 | 22.20 | 0.55 | 8.8 | 91.2 | 0.0 | -2.20 | 1.50 | 0.21 | 0.15 | 0.35 | 29029 | 3704 | 17 | 0 | 41 | 0 | 0 | logfile |
✔ | 7XMX | 33307 | 2023-11-20 | 2022-04-27 | 3.62 | 3.63 | 3.44 | 22.0 | 0.012 | 1.30 | 7.0 | 0.09 | 12.55 | 0.01 | 1.407 | 4.82 | 1.34 | 6.6 | 93.3 | 0.1 | -0.95 | 0.29 | 0.01 | 0.23 | 20.0 | 0.003 | 0.70 | 0.0 | 0.04 | 14.46 | 0.00 | 2.060 | 11.54 | 0.19 | 5.7 | 94.2 | 0.1 | -1.12 | 1.15 | 0.33 | 0.16 | 0.18 | 28727 | 3700 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 8E01 | 27812 | 2023-11-20 | 2022-08-08 | 3.4 | 3.80 | 3.71 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 17.85 | 0.00 | 2.278 | 9.40 | 0.41 | 2.0 | 98.0 | 0.0 | -0.28 | 0.63 | 0.61 | 0.23 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 18.00 | 0.01 | 2.152 | 13.74 | 0.83 | 4.2 | 95.8 | 0.0 | -0.24 | 1.07 | 0.73 | 0.80 | 1.28 | 91080 | 12060 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GWB | 34308 | 2023-11-18 | 2022-09-16 | 2.75 | 2.95 | 2.85 | 25.0 | 0.009 | 1.07 | 1.0 | 0.05 | 16.02 | 0.01 | 1.556 | 16.84 | 2.25 | 7.5 | 92.3 | 0.2 | -2.40 | 0.29 | 0.01 | 0.23 | 25.0 | 0.003 | 0.73 | 0.0 | 0.04 | 16.78 | 0.01 | 2.097 | 16.95 | 2.56 | 7.1 | 92.8 | 0.1 | -1.58 | 1.60 | 0.35 | 0.15 | 0.37 | 21879 | 2655 | 16 | 54 | 10 | 7 | 0 | logfile |
✔ | 6NDY | 0443 | 2023-11-15 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 16.31 | 0.00 | 0.894 | 11.65 | 0.52 | 5.9 | 94.1 | 0.0 | -0.22 | 1.30 | 0.79 | 0.80 | 0.84 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 7Yi4 | 33851 | 2023-11-19 | 2022-07-14 | 3.96 | 8.09 | 3.85 | 2.7 | 0.004 | 0.61 | 0.0 | 0.04 | 23.53 | 0.00 | 2.041 | 12.68 | 0.10 | 3.9 | 96.1 | 0.0 | 1.12 | 0.85 | 0.82 | 0.23 | 2.7 | 0.004 | 0.61 | 0.0 | 0.04 | 24.00 | 0.00 | 2.081 | 16.66 | 0.10 | 4.0 | 96.0 | 0.0 | 1.33 | 1.60 | 0.85 | 0.83 | 0.23 | 25351 | 2359 | 18 | 302 | 5 | 0 | 0 | logfile |
✔ | 5VA1 | 8650 | 2023-11-17 | 2017-03-24 | 3.7 | 5.99 | — | 4.4 | 0.008 | 1.02 | 0.0 | 0.06 | 11.84 | 0.00 | 1.715 | 8.09 | 1.30 | 4.6 | 95.4 | 0.0 | -3.52 | 0.65 | 0.78 | 0.25 | 4.5 | 0.004 | 0.84 | 0.0 | 0.05 | 15.36 | 0.00 | 2.149 | 21.57 | 0.27 | 2.3 | 97.6 | 0.1 | 0.09 | 2.74 | 0.66 | 0.83 | 0.09 | 17628 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RBE | 4795 | 2023-11-18 | 2019-04-10 | 3.8 | 3.81 | 4.03 | 5.1 | 0.007 | 1.27 | 0.0 | 0.06 | 18.44 | 0.01 | 2.076 | 9.10 | 1.35 | 11.9 | 86.8 | 1.2 | -4.17 | 0.38 | 0.09 | 0.25 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72721 | 4512 | 33 | 1750 | 0 | 0 | 0 | logfile |
✔ | 7RLJ | 24532 | 2023-11-17 | 2021-07-23 | 3.8 | 4.28 | — | 3.7 | 0.004 | 0.92 | 0.0 | 0.05 | 14.45 | 0.01 | 2.067 | 15.59 | 0.01 | 6.2 | 93.2 | 0.6 | -2.67 | 0.86 | 0.79 | 0.25 | 3.7 | 0.005 | 0.77 | 0.0 | 0.05 | 15.87 | 0.00 | 1.879 | 19.46 | 0.61 | 8.1 | 91.8 | 0.1 | -1.32 | 1.25 | 0.88 | 0.84 | 0.87 | 69156 | 8736 | 24 | 0 | 36 | 0 | 0 | logfile |
✔ | 6oF2 | 20040 | 2023-11-15 | 2019-03-28 | 2.9 | 2.77 | — | 3.7 | 0.006 | 1.00 | 0.0 | 0.05 | 14.63 | 0.01 | 2.062 | 8.80 | 1.02 | 17.7 | 80.2 | 2.2 | -4.30 | 0.69 | 0.63 | 0.25 | 3.4 | 0.004 | 0.81 | 0.0 | 0.04 | 17.12 | 0.01 | 1.964 | 10.21 | 2.71 | 8.0 | 92.0 | 0.0 | 0.24 | 1.60 | 0.79 | 0.83 | 1.80 | 11062 | 1422 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RZY | 24783 | 2023-11-17 | 2021-08-28 | 3.5 | 2.57 | 3.55 | 4.0 | 0.014 | 1.83 | 0.0 | 0.08 | 14.40 | 0.00 | 2.491 | 1.92 | 0.80 | 10.2 | 88.4 | 1.4 | -2.89 | 0.55 | 0.40 | 0.25 | 3.5 | 0.004 | 0.85 | 0.0 | 0.04 | 17.34 | 0.01 | 2.066 | 15.14 | 0.58 | 8.2 | 91.3 | 0.6 | -1.30 | 1.41 | 0.72 | 0.67 | 1.20 | 17458 | 2177 | 13 | 0 | 7 | 0 | 0 | logfile |
✔ | 6UE9 | 20751 | 2023-11-17 | 2019-09-20 | 2.9 | 3.89 | — | 4.2 | 0.007 | 1.05 | 0.0 | 0.06 | 13.69 | 0.01 | 2.241 | 3.10 | 0.32 | 11.2 | 88.8 | 0.0 | -3.87 | 0.59 | 0.37 | 0.26 | 3.6 | 0.004 | 1.00 | 0.0 | 0.05 | 15.77 | 0.01 | 2.138 | 12.28 | 4.31 | 7.3 | 92.7 | 0.0 | -1.79 | 1.79 | 0.78 | 0.81 | 1.76 | 18227 | 2475 | 17 | 0 | 12 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2023-11-14 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 17.88 | 0.01 | 1.271 | 29.54 | 0.58 | 3.7 | 96.3 | 0.0 | -0.37 | 2.45 | 0.78 | 0.74 | 0.54 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6i0Y | 0322 | 2023-11-21 | 2018-10-26 | 3.2 | 4.80 | — | 4.7 | 0.010 | 1.49 | 8.0 | 0.07 | 15.55 | 0.01 | 0.682 | 13.02 | 11.41 | 16.0 | 77.5 | 6.5 | -5.00 | 0.59 | 0.58 | 0.26 | 4.7 | 0.008 | 0.95 | 0.0 | 0.05 | 16.40 | 0.01 | 0.954 | 26.63 | 1.60 | 14.9 | 83.3 | 1.9 | -2.98 | 1.62 | 0.61 | 0.74 | 0.68 | 93619 | 3551 | 48 | 3049 | 144 | 439 | 0 | logfile |