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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8ES4 | 28562 | 2024-03-11 | 2022-10-13 | 3.3 | 3.43 | 3.25 | 5.2 | 0.002 | 0.49 | 0.0 | 0.04 | 13.99 | 0.00 | 0.946 | 19.53 | 0.00 | 3.7 | 96.2 | 0.0 | 0.75 | 0.36 | 0.16 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110772 | 14766 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2024-03-10 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 24.99 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.003 | 0.92 | 0.0 | 0.05 | 17.35 | 0.00 | 2.201 | 16.81 | 5.19 | 2.8 | 97.2 | 0.0 | 3.26 | 0.50 | 0.42 | 0.64 | -0.08 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 8HXK | 35079 | 2024-03-15 | 2023-01-04 | 3.8 | 4.30 | 4.02 | 4.0 | 0.005 | 1.00 | 0.0 | 0.06 | 14.61 | 0.01 | 2.159 | 12.80 | 0.00 | 9.1 | 90.9 | 0.0 | -2.65 | 0.74 | 0.49 | 0.10 | 4.0 | 0.003 | 0.77 | 0.0 | 0.05 | 16.47 | 0.00 | 2.086 | 21.44 | 2.93 | 9.9 | 90.0 | 0.1 | -2.20 | 1.61 | 0.82 | 0.71 | 0.57 | 10340 | 1273 | 6 | 0 | 9 | 0 | 0 | logfile |
✔ | 7TAX | 25789 | 2024-03-20 | 2021-12-21 | 2.8 | 3.31 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 16.22 | 0.01 | 2.236 | 6.32 | 0.00 | 4.6 | 95.4 | 0.0 | -0.99 | 0.64 | 0.56 | 0.11 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 18.64 | 0.00 | 2.097 | 12.13 | 1.61 | 4.8 | 95.2 | 0.0 | -0.01 | 1.22 | 0.78 | 0.85 | 2.41 | 27855 | 3349 | 14 | 99 | 0 | 0 | 0 | logfile |
✔ | 8G34 | 29688 | 2024-03-21 | 2023-02-06 | 3.2 | 2.16 | — | 3.3 | 0.008 | 1.01 | 3.0 | 0.06 | 24.42 | 0.01 | 2.065 | 4.66 | 0.72 | 4.6 | 95.3 | 0.1 | -1.60 | 0.52 | 0.41 | 0.11 | 2.0 | 0.007 | 0.81 | 2.0 | 0.04 | 23.73 | 0.01 | 1.691 | 12.64 | 4.34 | 7.1 | 92.9 | 0.1 | -1.16 | 1.89 | 0.74 | 0.75 | 2.31 | 144256 | 5922 | 52 | 4559 | 0 | 0 | 0 | logfile |
✔ | 8i9U | 35284 | 2024-03-12 | 2023-02-07 | 3.1 | 3.25 | 3.24 | 3.3 | 0.001 | 0.42 | 0.0 | 0.04 | 15.88 | 0.00 | 2.250 | 4.20 | 1.78 | 12.1 | 87.2 | 0.7 | -2.67 | 0.56 | 0.55 | 0.11 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.77 | 0.00 | 2.177 | 5.95 | 2.02 | 5.5 | 94.4 | 0.1 | -0.46 | 0.71 | 0.69 | 0.74 | 0.59 | 65141 | 8483 | 28 | 0 | 10 | 0 | 0 | logfile |
✔ | 5ZEP | 6921 | 2024-03-01 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 24.04 | 0.01 | 1.089 | 21.16 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | 4.5 | 0.006 | 0.79 | 2.0 | 0.04 | 24.61 | 0.01 | 1.879 | 28.60 | 4.65 | 7.3 | 92.5 | 0.2 | -1.56 | 1.66 | 0.90 | 0.86 | 0.20 | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |
✔ | 7X25 | 32958 | 2024-03-25 | 2022-02-25 | 2.49 | 2.74 | — | 2.8 | 0.008 | 1.08 | 2.0 | 0.06 | 17.29 | 0.00 | 1.050 | 8.51 | 9.22 | 10.3 | 88.6 | 1.1 | -1.98 | 0.59 | 0.32 | 0.12 | 1.8 | 0.006 | 0.91 | 1.0 | 0.05 | 17.06 | 0.01 | 2.044 | 17.10 | 2.59 | 9.2 | 90.6 | 0.2 | -1.87 | 1.82 | 0.83 | 0.76 | 1.81 | 37110 | 4844 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W7M | 21571 | 2024-03-25 | 2020-03-19 | 3.8 | 3.72 | — | 3.6 | 0.002 | 0.58 | 0.0 | 0.03 | 23.74 | 0.00 | 2.031 | 14.77 | 0.10 | 7.4 | 92.3 | 0.3 | -3.67 | 0.68 | 0.56 | 0.12 | 3.6 | 0.005 | 0.86 | 0.0 | 0.05 | 24.36 | 0.01 | 1.997 | 28.91 | 4.43 | 13.1 | 86.7 | 0.3 | -2.88 | 1.36 | 0.72 | 0.62 | 0.50 | 50694 | 2319 | 20 | 1512 | 0 | 0 | 0 | logfile |
✔ | 7A24 | 11615 | 2024-03-25 | 2020-08-16 | 3.8 | 3.92 | — | 3.8 | 0.009 | 1.16 | 33.0 | 1.08 | 15.35 | 0.01 | 0.850 | 22.90 | 2.62 | 9.6 | 90.1 | 0.3 | -3.10 | 0.53 | 0.47 | 0.12 | 3.8 | 0.009 | 1.78 | 0.0 | 0.33 | 17.69 | 0.01 | 1.855 | 28.20 | 4.76 | 9.2 | 90.7 | 0.1 | -2.05 | 1.20 | 0.60 | 0.60 | 0.37 | 49497 | 6253 | 46 | 0 | 17 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2024-03-16 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.06 | 11.60 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.004 | 0.81 | 0.0 | 0.05 | 15.93 | 0.00 | 2.076 | 23.13 | 3.74 | 7.2 | 92.8 | 0.0 | -2.20 | 2.13 | 0.72 | 0.75 | -0.11 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 8ANE | 15540 | 2024-03-23 | 2022-08-05 | 3.2 | 2.95 | 3.14 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 17.19 | 0.01 | 2.198 | 3.35 | 0.93 | 4.6 | 95.4 | 0.0 | -1.93 | 0.55 | 0.43 | 0.13 | 3.1 | 0.005 | 0.81 | 0.0 | 0.05 | 19.15 | 0.01 | 1.760 | 13.83 | 2.47 | 6.8 | 93.1 | 0.0 | -1.82 | 2.66 | 0.66 | 0.64 | 1.07 | 36740 | 2212 | 8 | 66 | 0 | 0 | 18195 | logfile |
✔ | 8EDN | 28037 | 2024-03-10 | 2022-09-05 | 3.8 | 3.47 | 3.75 | 3.3 | 0.002 | 0.58 | 0.0 | 0.04 | 11.31 | 0.00 | 2.205 | 6.81 | 0.46 | 5.7 | 94.1 | 0.2 | 2.77 | 0.65 | 0.60 | 0.13 | 3.3 | 0.002 | 0.58 | 0.0 | 0.03 | 13.70 | 0.00 | 2.177 | 7.12 | 3.23 | 3.7 | 96.1 | 0.2 | 2.99 | 1.03 | 0.70 | 0.71 | 2.12 | 3683 | 579 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o7R | 12754 | 2024-03-24 | 2021-04-13 | 3.9 | 4.51 | — | 4.3 | 0.013 | 1.33 | 8.0 | 0.07 | 16.90 | 0.01 | 1.912 | 20.97 | 1.07 | 18.3 | 81.4 | 0.3 | -5.78 | 0.83 | 0.75 | 0.13 | 4.3 | 0.003 | 0.92 | 0.0 | 0.05 | 17.17 | 0.00 | 1.989 | 20.66 | 3.76 | 9.6 | 90.3 | 0.1 | -3.27 | 0.83 | 0.83 | 0.76 | 0.23 | 40530 | 5126 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2024-03-11 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.49 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 10.0 | 0.004 | 0.83 | 3.0 | 0.05 | 16.74 | 0.01 | 1.659 | 17.27 | 2.30 | 6.4 | 93.5 | 0.2 | -0.97 | 1.04 | 0.41 | 0.18 | 0.03 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 7APK | 11857 | 2024-03-16 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 4.07 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 12.95 | 0.00 | 2.098 | 11.33 | 1.10 | 5.9 | 94.0 | 0.1 | 1.23 | 1.13 | 0.50 | 0.44 | 0.89 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 7CQ7 | 30438 | 2024-03-16 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.35 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | 3.9 | 0.004 | 0.88 | 0.0 | 0.05 | 15.51 | 0.00 | 2.115 | 15.77 | 2.35 | 7.4 | 92.6 | 0.0 | -1.02 | 1.43 | 0.53 | 0.75 | 0.67 | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✔ | 8FN6 | 29306 | 2024-03-18 | 2022-12-27 | 3.7 | 3.97 | 3.74 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 17.58 | 0.00 | 2.196 | 11.03 | 0.60 | 6.0 | 93.9 | 0.0 | -0.22 | 0.75 | 0.75 | 0.14 | 3.9 | 0.002 | 0.60 | 0.0 | 0.04 | 17.78 | 0.00 | 2.120 | 10.33 | 3.69 | 6.2 | 93.8 | 0.0 | 0.06 | 0.37 | 0.76 | 0.76 | 0.27 | 22421 | 2729 | 8 | 46 | 1 | 0 | 0 | logfile |
✔ | 8D6X | 27225 | 2024-03-15 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.76 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.64 | 0.0 | 0.04 | 14.47 | 0.00 | 2.075 | 23.67 | 1.42 | 4.1 | 95.9 | 0.0 | 0.67 | 4.63 | 0.58 | 0.33 | 0.09 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 8T2T | 40987 | 2024-03-16 | 2023-06-06 | 3.0 | 3.39 | 3.19 | 9.5 | 0.006 | 0.97 | 0.0 | 0.05 | 24.84 | 0.01 | 1.982 | 4.25 | 0.00 | 4.5 | 95.0 | 0.5 | -1.78 | 0.45 | 0.06 | 0.14 | 3.0 | 0.007 | 1.28 | 0.0 | 0.06 | 26.99 | 0.01 | 0.920 | 37.81 | 5.28 | 4.7 | 95.3 | 0.0 | -2.15 | 2.56 | 0.75 | 0.71 | 1.29 | 14876 | 387 | 5 | 546 | 12 | 0 | 0 | logfile |