Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTM	24683	2023-11-14	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	14.10	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.4	0.003	0.82	0.0	0.04	15.77	0.00	2.133	12.74	0.20	5.5	94.4	0.1	0.19	4.57	0.66	0.78	1.49	9161	1142	6	0	12	0	0	logfile
✔	6XWQ	10635	2023-11-14	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.80	0.0	0.04	15.44	0.00	2.167	14.27	0.30	3.8	96.2	0.0	1.16	1.16	0.72	0.84	0.30	9572	1281	6	0	0	0	0	logfile
✔	7QPG	14120	2023-11-14	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.3	0.003	0.67	0.0	0.04	13.10	0.00	2.137	11.18	0.11	3.0	97.0	0.0	1.12	0.84	0.88	0.76	0.33	57164	7156	6	0	0	0	0	logfile
✔	8DFo	27409	2023-11-18	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	17.81	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.75	0.0	0.04	17.28	0.01	2.086	17.82	0.12	4.2	95.8	0.0	-0.71	1.86	0.44	0.39	0.56	23861	2912	13	45	0	0	0	logfile
✔	6MWQ	9277	2023-11-18	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.72	0.0	0.04	13.43	0.00	2.152	8.38	1.78	4.1	95.7	0.2	-1.12	1.34	0.78	0.87	1.94	22072	2873	8	0	0	0	0	logfile
✔	7MiD	23847	2023-11-14	2021-04-16	3.56	4.10	—	3.9	0.010	1.02	0.0	0.06	20.24	0.01	0.918	14.61	5.73	8.6	91.3	0.1	-1.30	0.76	0.66	0.22	4.0	0.003	0.72	0.0	0.04	19.99	0.00	2.160	11.77	0.11	6.2	93.8	0.0	0.11	1.24	0.82	0.80	0.87	9789	1080	11	57	6	0	0	logfile
✔	7CHH	30374	2023-11-20	2020-07-05	3.49	2.44	—	20.0	0.007	1.10	0.0	0.06	15.16	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.2	0.012	1.23	0.0	0.06	16.28	0.01	1.926	22.20	0.55	8.8	91.2	0.0	-2.20	1.50	0.21	0.15	0.35	29029	3704	17	0	41	0	0	logfile
✔	7XMX	33307	2023-11-20	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.55	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	20.0	0.003	0.70	0.0	0.04	14.46	0.00	2.060	11.54	0.19	5.7	94.2	0.1	-1.12	1.15	0.33	0.16	0.18	28727	3700	12	0	24	0	0	logfile
✔	8E01	27812	2023-11-20	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	2.278	9.40	0.41	2.0	98.0	0.0	-0.28	0.63	0.61	0.23	3.8	0.004	0.69	0.0	0.05	18.00	0.01	2.152	13.74	0.83	4.2	95.8	0.0	-0.24	1.07	0.73	0.80	1.28	91080	12060	60	0	0	0	0	logfile
✔	8GWB	34308	2023-11-18	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.73	0.0	0.04	16.78	0.01	2.097	16.95	2.56	7.1	92.8	0.1	-1.58	1.60	0.35	0.15	0.37	21879	2655	16	54	10	7	0	logfile
✔	6NDY	0443	2023-11-15	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.31	0.00	0.894	11.65	0.52	5.9	94.1	0.0	-0.22	1.30	0.79	0.80	0.84	12531	1596	11	0	20	0	0	logfile
✔	7Yi4	33851	2023-11-19	2022-07-14	3.96	8.09	3.85	2.7	0.004	0.61	0.0	0.04	23.53	0.00	2.041	12.68	0.10	3.9	96.1	0.0	1.12	0.85	0.82	0.23	2.7	0.004	0.61	0.0	0.04	24.00	0.00	2.081	16.66	0.10	4.0	96.0	0.0	1.33	1.60	0.85	0.83	0.23	25351	2359	18	302	5	0	0	logfile
✔	5VA1	8650	2023-11-17	2017-03-24	3.7	5.99	—	4.4	0.008	1.02	0.0	0.06	11.84	0.00	1.715	8.09	1.30	4.6	95.4	0.0	-3.52	0.65	0.78	0.25	4.5	0.004	0.84	0.0	0.05	15.36	0.00	2.149	21.57	0.27	2.3	97.6	0.1	0.09	2.74	0.66	0.83	0.09	17628	2240	4	0	0	0	0	logfile
✘	6RBE	4795	2023-11-18	2019-04-10	3.8	3.81	4.03	5.1	0.007	1.27	0.0	0.06	18.44	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.38	0.09	0.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	7RLJ	24532	2023-11-17	2021-07-23	3.8	4.28	—	3.7	0.004	0.92	0.0	0.05	14.45	0.01	2.067	15.59	0.01	6.2	93.2	0.6	-2.67	0.86	0.79	0.25	3.7	0.005	0.77	0.0	0.05	15.87	0.00	1.879	19.46	0.61	8.1	91.8	0.1	-1.32	1.25	0.88	0.84	0.87	69156	8736	24	0	36	0	0	logfile
✔	6oF2	20040	2023-11-15	2019-03-28	2.9	2.77	—	3.7	0.006	1.00	0.0	0.05	14.63	0.01	2.062	8.80	1.02	17.7	80.2	2.2	-4.30	0.69	0.63	0.25	3.4	0.004	0.81	0.0	0.04	17.12	0.01	1.964	10.21	2.71	8.0	92.0	0.0	0.24	1.60	0.79	0.83	1.80	11062	1422	6	0	4	0	0	logfile
✔	7RZY	24783	2023-11-17	2021-08-28	3.5	2.57	3.55	4.0	0.014	1.83	0.0	0.08	14.40	0.00	2.491	1.92	0.80	10.2	88.4	1.4	-2.89	0.55	0.40	0.25	3.5	0.004	0.85	0.0	0.04	17.34	0.01	2.066	15.14	0.58	8.2	91.3	0.6	-1.30	1.41	0.72	0.67	1.20	17458	2177	13	0	7	0	0	logfile
✔	6UE9	20751	2023-11-17	2019-09-20	2.9	3.89	—	4.2	0.007	1.05	0.0	0.06	13.69	0.01	2.241	3.10	0.32	11.2	88.8	0.0	-3.87	0.59	0.37	0.26	3.6	0.004	1.00	0.0	0.05	15.77	0.01	2.138	12.28	4.31	7.3	92.7	0.0	-1.79	1.79	0.78	0.81	1.76	18227	2475	17	0	12	0	0	logfile
✔	6TA3	10421	2023-11-14	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.89	0.0	0.05	17.88	0.01	1.271	29.54	0.58	3.7	96.3	0.0	-0.37	2.45	0.78	0.74	0.54	9491	1201	6	0	5	0	0	logfile
✔	6i0Y	0322	2023-11-21	2018-10-26	3.2	4.80	—	4.7	0.010	1.49	8.0	0.07	15.55	0.01	0.682	13.02	11.41	16.0	77.5	6.5	-5.00	0.59	0.58	0.26	4.7	0.008	0.95	0.0	0.05	16.40	0.01	0.954	26.63	1.60	14.9	83.3	1.9	-2.98	1.62	0.61	0.74	0.68	93619	3551	48	3049	144	439	0	logfile

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