Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o6B	12737	2023-04-23	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	8EFD	28080	2023-04-20	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.61	0.0	0.04	15.94	0.00	2.165	13.04	0.26	4.5	95.5	0.0	0.71	0.55	0.88	0.80	0.54	7107	886	2	0	0	0	0	logfile
✔	7XK8	33247	2023-04-20	2022-04-19	3.3	3.49	3.12	3.4	0.003	0.48	0.0	0.04	11.62	0.00	2.248	7.78	0.00	3.1	96.9	0.0	-1.25	0.55	0.65	0.38	3.5	0.006	0.74	0.0	0.05	14.76	0.00	2.041	16.39	1.34	4.6	95.4	0.0	0.19	0.68	0.59	0.73	0.65	6796	923	5	0	1	0	0	logfile
✔	7DGD	30671	2023-04-22	2020-11-11	3.96	4.40	—	4.2	0.015	2.08	10.0	0.12	15.16	0.01	1.930	4.79	3.87	9.2	89.9	0.9	-4.26	0.61	0.53	0.38	4.2	0.004	0.85	0.0	0.04	16.24	0.00	2.143	19.09	0.15	9.4	90.5	0.1	-2.00	1.90	0.69	0.68	0.77	12381	1572	2	0	0	0	0	logfile
✔	7CKY	30394	2023-04-23	2020-07-20	3.2	3.28	—	3.3	0.003	0.48	0.0	0.04	14.59	0.00	2.154	17.29	1.51	4.3	95.7	0.0	-2.84	0.46	0.50	0.39	3.2	0.004	0.72	0.0	0.04	16.45	0.00	2.034	23.52	0.46	6.2	93.8	0.0	-1.26	1.76	0.61	0.77	1.72	8128	1038	5	0	2	0	0	logfile
✔	5L4K	4002	2023-04-29	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	6QB8	4489	2023-04-21	2018-12-20	3.97	4.19	—	2.3	0.005	0.96	0.0	0.06	15.67	0.01	2.238	11.60	0.76	8.2	91.8	0.0	-4.47	0.89	0.77	0.40	2.1	0.004	0.79	0.0	0.05	16.49	0.00	2.037	28.20	0.27	9.0	91.0	0.0	-1.64	1.54	0.89	0.80	0.52	60035	7870	18	0	2	0	0	logfile
✔	7M3L	23656	2023-04-20	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	6YUF	10930	2023-04-25	2020-04-27	3.94	4.30	4.21	4.1	0.018	1.71	8.0	0.08	18.03	0.01	2.033	13.39	0.24	8.9	91.1	0.0	-3.37	0.77	0.75	0.41	4.2	0.003	0.77	0.0	0.04	19.06	0.00	2.048	15.09	0.34	7.5	92.5	0.0	-0.98	0.64	0.78	0.77	0.22	19528	2264	8	64	4	0	0	logfile
✔	6Y7C	10713	2023-04-29	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.67	0.02	0.193	10.34	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.013	0.93	0.0	0.04	18.90	0.01	1.977	36.16	0.35	15.8	84.1	0.1	-3.77	2.58	0.92	0.79	0.35	79690	5381	34	1735	0	0	0	logfile
✔	7M18	23615	2023-04-20	2021-03-12	3.38	4.09	—	4.1	0.007	1.33	0.0	0.05	19.80	0.01	1.728	23.77	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.003	0.79	0.0	0.04	19.96	0.01	2.078	17.84	0.33	8.5	91.3	0.1	-1.88	0.55	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	7TDi	25830	2023-04-23	2021-12-31	3.3	3.81	3.62	3.6	0.005	0.81	0.0	0.04	16.22	0.01	2.159	4.24	0.85	4.4	95.5	0.1	-0.18	0.82	0.72	0.41	3.6	0.060	3.45	153.0	0.17	19.75	0.02	1.655	78.91	3.69	33.8	63.9	2.3	-7.06	1.45	0.89	0.87	1.83	117132	12936	8	0	3616	0	0	logfile
✔	7BW8	30230	2023-04-20	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.23	0.01	2.200	21.41	0.88	10.6	89.4	0.0	-3.01	2.07	0.68	0.63	0.53	6021	737	3	0	0	0	0	logfile
✔	7K8V	22732	2023-04-27	2020-09-27	3.8	4.64	—	4.0	0.003	0.62	0.0	0.07	12.76	0.00	2.005	11.42	0.15	4.8	95.1	0.2	-2.90	0.81	0.74	0.42	4.1	0.003	0.66	0.0	0.04	14.56	0.00	2.141	15.09	0.26	5.3	94.6	0.1	-1.26	1.16	0.82	0.79	0.49	26248	3390	20	0	41	0	0	logfile
✔	7B6X	12057	2023-04-21	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.45	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.74	0.0	0.04	16.14	0.00	2.135	23.78	0.34	7.5	92.4	0.1	-1.21	1.36	0.75	0.71	0.06	10470	1290	8	0	0	0	0	logfile
✔	6oA9	0665	2023-04-28	2019-03-15	3.9	4.07	4.02	4.0	0.004	0.99	1.0	0.05	14.19	0.01	1.585	10.21	0.45	6.5	93.2	0.2	-5.28	0.75	0.67	0.43	4.0	0.003	0.76	0.0	0.04	15.82	0.00	2.038	13.15	0.29	6.7	93.3	0.0	-1.46	1.65	0.81	0.78	0.85	29006	3718	17	0	12	0	0	logfile
✔	6Qi8	4552	2023-04-23	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	6Y5H	10697	2023-04-22	2020-02-25	3.0	3.10	3.04	3.1	0.004	0.66	0.0	0.08	15.26	0.01	2.238	2.93	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	3.1	0.004	0.61	0.0	0.04	17.68	0.00	2.152	4.46	3.51	2.1	97.9	0.0	-0.36	1.11	0.74	0.86	3.63	11994	1470	18	0	33	0	0	logfile
✔	6WVL	21922	2023-04-27	2020-05-06	3.2	3.69	3.05	3.8	0.013	1.98	5.0	0.10	16.20	0.02	1.944	0.63	0.41	1.8	98.2	0.0	-1.96	0.44	0.48	0.43	3.6	0.004	0.67	0.0	0.04	17.33	0.00	1.796	12.42	0.41	3.4	96.6	0.0	-0.06	2.50	0.49	0.74	2.41	26744	1712	8	2	6	0	13046	logfile
✘	6TM5	10518	2023-04-22	2019-12-03	3.9	4.07	—	4.1	0.010	1.11	0.0	0.05	15.92	0.01	1.619	28.83	0.76	11.9	87.8	0.3	-4.46	0.36	0.48	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63885	8117	23	0	3	0	0	logfile

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