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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 4Ci0 | 2513 | 2024-03-18 | 2013-12-05 | 3.36 | 3.43 | — | 3.4 | 0.014 | 1.93 | 24.0 | 1.74 | 23.87 | 0.03 | 1.915 | 119.42 | 39.11 | 3.4 | 96.5 | 0.1 | 1.78 | 0.71 | 0.70 | 0.31 | 3.4 | 0.014 | 2.75 | 1.0 | 0.54 | 18.94 | 0.00 | 1.777 | 21.31 | 6.01 | 4.2 | 95.8 | 0.0 | -0.53 | 3.19 | 0.81 | 0.87 | 1.43 | 83472 | 10716 | 72 | 0 | 108 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2024-03-13 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.33 | 0.00 | 2.004 | 14.38 | 3.09 | 5.4 | 94.2 | 0.4 | 0.90 | 2.86 | 0.89 | 0.83 | 1.24 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2024-03-15 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.005 | 0.83 | 0.0 | 0.04 | 11.98 | 0.00 | 2.066 | 18.47 | 0.00 | 10.9 | 87.8 | 1.3 | -1.52 | 1.64 | 0.55 | 0.74 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2024-03-20 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.131 | 22.79 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2024-03-19 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 23.51 | 0.01 | 0.879 | 12.34 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.002 | 0.57 | 0.0 | 0.03 | 23.85 | 0.00 | 1.744 | 53.30 | 5.24 | 12.4 | 85.4 | 2.1 | -3.11 | 1.58 | 0.58 | 0.79 | 1.19 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 4V19 | 2787 | 2024-03-15 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.32 | 0.0 | 0.05 | 23.56 | 0.01 | 1.860 | 9.75 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.004 | 0.72 | 1.0 | 0.04 | 22.66 | 0.01 | 1.093 | 9.21 | 4.48 | 3.8 | 96.1 | 0.1 | -0.27 | 1.50 | 0.76 | 0.88 | 2.14 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 4V1A | 2787 | 2024-03-22 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.17 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.98 | 0.00 | 2.070 | 10.97 | 3.71 | 4.0 | 95.9 | 0.1 | 0.59 | 1.85 | 0.38 | 0.80 | 1.65 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 4V1W | 2788 | 2024-03-22 | 2014-10-02 | 4.7 | 4.69 | — | 4.7 | 0.020 | 2.45 | 172.0 | 0.17 | 18.97 | 0.01 | 2.533 | 7.94 | 7.67 | 3.0 | 96.5 | 0.6 | -2.40 | 0.74 | 0.84 | — | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.57 | 0.00 | 2.213 | 17.43 | 0.69 | 3.0 | 97.0 | 0.0 | 1.92 | 2.68 | 0.75 | 0.79 | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2024-03-15 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 25.54 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.042 | 1.66 | 0.0 | 0.05 | 23.19 | 0.02 | 1.926 | 18.85 | 3.11 | 9.9 | 89.3 | 0.8 | -2.99 | 2.00 | 0.63 | 0.82 | 1.46 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 5A0Q | 2981 | 2024-03-24 | 2015-04-22 | 3.5 | 3.34 | — | 3.3 | 0.019 | 2.22 | 14.0 | 0.11 | 16.22 | 0.02 | 0.702 | 33.75 | 1.99 | 4.5 | 95.1 | 0.4 | -3.18 | 0.60 | 0.61 | 1.82 | 3.3 | 0.004 | 0.82 | 0.0 | 0.05 | 18.24 | 0.01 | 2.124 | 20.58 | 5.64 | 4.6 | 95.3 | 0.1 | -1.45 | 0.96 | 0.64 | 0.64 | 0.91 | 43448 | 5582 | 34 | 0 | 6 | 0 | 0 | logfile |
✔ | 5A1A | 2984 | 2024-03-22 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.18 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.004 | 0.70 | 0.0 | 0.05 | 17.31 | 0.00 | 1.928 | 11.82 | 3.52 | 3.3 | 96.6 | 0.1 | -0.62 | 0.59 | 0.53 | 0.79 | 4.08 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 5A22 | 6337 | 2024-03-22 | 2015-05-06 | 3.8 | 4.20 | — | 4.2 | 0.009 | 1.49 | 0.0 | 0.06 | 15.75 | 0.01 | 2.014 | 14.11 | 5.57 | 13.9 | 84.2 | 2.0 | -5.08 | 0.72 | 0.82 | 1.68 | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 16.79 | 0.01 | 1.850 | 17.31 | 3.57 | 12.7 | 86.3 | 1.0 | -1.43 | 2.65 | 0.68 | 0.75 | 1.23 | 32187 | 2002 | 1 | 0 | 2 | 0 | 16110 | logfile |
✔ | 5A2Q | 3019 | 2024-03-17 | 2015-05-21 | 3.9 | 4.01 | — | 3.9 | 0.008 | 1.23 | 0.0 | 0.05 | 24.76 | 0.01 | 1.830 | 13.38 | 12.93 | 4.3 | 95.5 | 0.2 | -3.44 | 0.89 | 0.88 | 1.18 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 23.86 | 0.00 | 1.821 | 15.59 | 5.86 | 4.9 | 94.9 | 0.1 | -0.22 | 1.57 | 0.86 | 0.82 | 1.13 | 80749 | 4931 | 45 | 1922 | 115 | 144 | 0 | logfile |
✔ | 5A63 | 3061 | 2024-03-14 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.69 | 8.0 | 0.11 | 20.48 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.004 | 0.75 | 0.0 | 0.05 | 17.43 | 0.00 | 2.188 | 12.84 | 5.53 | 5.9 | 93.9 | 0.2 | 0.19 | 3.22 | 0.62 | 0.82 | 1.65 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2024-03-15 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.57 | 0.0 | 0.03 | 10.45 | 0.00 | 2.097 | 10.54 | 0.00 | 5.1 | 94.9 | 0.0 | -0.33 | 1.45 | 0.40 | 0.72 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 5A6F | 3063 | 2024-03-14 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.8 | 0.002 | 0.56 | 0.0 | 0.04 | 10.77 | 0.00 | 2.024 | 10.19 | 0.00 | 5.8 | 94.2 | 0.0 | -0.80 | 1.43 | 0.58 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✘ | 5A7U | 3079 | 2024-03-10 | 2015-07-10 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✔ | 5A8L | 3099 | 2024-03-15 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 21.13 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.85 | 0.0 | 0.04 | 23.10 | 0.01 | 2.082 | 20.16 | 3.98 | 11.9 | 87.3 | 0.8 | -2.35 | 1.86 | 0.23 | 0.63 | 0.31 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 5A9Z | 6396 | 2024-03-27 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 28.05 | 0.03 | 0.000 | 199.42 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.006 | 0.94 | 0.0 | 0.04 | 25.37 | 0.01 | 0.000 | 36.51 | 0.22 | 20.5 | 77.2 | 2.3 | -4.19 | 2.91 | 0.87 | 0.81 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 5ACo | 3121 | 2024-03-18 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.98 | 3.0 | 0.11 | 17.67 | 0.02 | 1.986 | 10.73 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.007 | 0.95 | 0.0 | 0.05 | 11.49 | 0.00 | 2.046 | 17.42 | 0.00 | 8.4 | 91.1 | 0.5 | -1.31 | 1.61 | 0.82 | 0.84 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |