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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NBH | 0411 | 2023-02-19 | 2018-12-07 | 3.5 | 4.06 | — | 4.0 | 0.005 | 0.86 | 0.0 | 0.05 | 8.34 | 0.00 | 2.357 | 1.79 | 0.20 | 2.6 | 97.4 | 0.0 | -1.51 | 0.62 | 0.76 | 1.73 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 15.72 | 0.00 | 2.193 | 11.77 | 0.51 | 2.7 | 97.3 | 0.0 | 0.46 | 2.20 | 0.58 | 0.74 | 1.66 | 9502 | 1159 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NBi | 0412 | 2023-02-19 | 2018-12-07 | 4.0 | 4.43 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 8.85 | 0.00 | 2.337 | 2.35 | 0.31 | 2.8 | 97.2 | 0.0 | -1.70 | 0.62 | 0.74 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 16.22 | 0.00 | 2.115 | 18.96 | 0.72 | 2.7 | 97.3 | 0.0 | -0.13 | 2.54 | 0.64 | 0.78 | — | 9195 | 1141 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 6NCV | 0438 | 2023-02-21 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.64 | 0.00 | 2.088 | 7.36 | 0.85 | 7.7 | 92.3 | 0.0 | -0.38 | 1.32 | 0.75 | 0.86 | 1.18 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND0 | 0439 | 2023-02-24 | 2018-12-13 | 3.5 | 3.65 | — | 3.6 | 0.008 | 0.94 | 0.0 | 0.06 | 10.80 | 0.01 | 2.178 | 5.06 | 0.43 | 7.8 | 92.0 | 0.2 | -4.62 | 0.60 | 0.75 | 3.00 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 14.64 | 0.00 | 2.110 | 9.60 | 0.27 | 6.0 | 93.9 | 0.1 | -1.29 | 0.83 | 0.67 | 0.80 | 2.26 | 22964 | 2908 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ND1 | 0440 | 2023-02-19 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2023-02-24 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 14.55 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.007 | 1.08 | 0.0 | 0.05 | 15.04 | 0.01 | 1.926 | 19.87 | 0.00 | 17.6 | 82.3 | 0.1 | -3.59 | 1.14 | 0.85 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2023-02-20 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 16.31 | 0.00 | 0.894 | 11.65 | 0.52 | 5.9 | 94.1 | 0.0 | -0.22 | 1.30 | 0.79 | 0.80 | 0.84 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |
✔ | 6NMA | 0445 | 2023-02-20 | 2019-01-10 | 3.38 | 3.71 | — | 3.7 | 0.009 | 0.78 | 0.0 | 0.05 | 15.30 | 0.00 | 1.973 | 10.70 | 8.09 | 11.0 | 89.0 | 0.1 | -4.94 | 0.65 | 0.78 | 2.70 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.44 | 0.00 | 2.189 | 8.70 | 0.46 | 8.0 | 92.0 | 0.0 | -1.40 | 1.18 | 0.66 | 0.79 | 1.78 | 12404 | 1435 | 6 | 25 | 2 | 0 | 0 | logfile |
✔ | 6NMC | 0446 | 2023-02-20 | 2019-01-10 | 4.24 | 4.55 | — | 4.2 | 0.014 | 1.16 | 6.0 | 0.07 | 16.40 | 0.01 | 2.015 | 20.07 | 2.45 | 10.2 | 89.4 | 0.4 | -4.23 | 0.86 | 0.76 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.04 | 14.44 | 0.00 | 1.882 | 19.31 | 0.00 | 8.0 | 92.0 | 0.0 | -0.90 | 1.84 | 0.89 | 0.84 | — | 12808 | 1480 | 8 | 25 | 2 | 6 | 0 | logfile |
✘ | 6NMD | 0447 | 2023-02-20 | 2019-01-10 | 3.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.62 | — | — | 0.29 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 18.13 | 0.00 | 1.939 | 13.02 | 0.41 | 6.3 | 93.7 | 0.0 | -1.44 | — | 0.73 | 0.78 | 1.29 | 11779 | 1358 | 7 | 25 | 2 | 6 | 0 | logfile |
✔ | 6NMi | 0452 | 2023-02-25 | 2019-01-10 | 3.7 | 3.82 | 3.78 | 3.8 | 0.008 | 1.13 | 0.0 | 0.06 | 9.85 | 0.01 | 2.240 | 6.06 | 0.16 | 10.6 | 89.2 | 0.2 | -4.24 | 0.71 | 0.76 | 1.90 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 15.88 | 0.00 | 2.092 | 13.50 | 0.32 | 7.7 | 92.3 | 0.0 | -0.86 | 0.90 | 0.72 | 0.77 | 1.00 | 24379 | 2908 | 12 | 0 | 277 | 0 | 0 | logfile |
✔ | 6o1o | 0454 | 2023-02-21 | 2019-02-21 | 3.8 | 4.00 | — | 3.6 | 0.008 | 1.55 | 0.0 | 0.07 | 15.00 | 0.01 | 2.295 | 4.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.72 | 0.70 | — | 3.6 | 0.013 | 1.77 | 0.0 | 0.07 | 13.79 | 0.00 | 1.993 | 31.58 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.78 | 0.76 | — | 15193 | 0 | 14 | 66 | 2757 | 0 | 0 | logfile |
✔ | 6NN6 | 0458 | 2023-02-21 | 2019-01-14 | 3.9 | 3.97 | — | 3.8 | 0.010 | 1.02 | 0.0 | 0.05 | 25.83 | 0.01 | 2.144 | 9.01 | 0.81 | 3.8 | 96.0 | 0.2 | -5.04 | 0.83 | 0.80 | 2.90 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 26.56 | 0.00 | 2.077 | 11.67 | 0.61 | 3.5 | 96.5 | 0.0 | 0.41 | 1.77 | 0.82 | 0.78 | 1.35 | 15125 | 1149 | 12 | 290 | 0 | 0 | 0 | logfile |
✔ | 6NoG | 0468 | 2023-02-23 | 2019-01-16 | 3.9 | 4.05 | 4.50 | 3.9 | 0.009 | 1.12 | 1.0 | 0.06 | 26.55 | 0.01 | 2.239 | 6.27 | 0.84 | 4.1 | 95.9 | 0.0 | -1.83 | 0.84 | 0.81 | 0.53 | 3.9 | 0.004 | 0.63 | 0.0 | 0.03 | 26.62 | 0.00 | 2.153 | 11.24 | 0.32 | 2.2 | 97.8 | 0.0 | 1.84 | 1.76 | 0.86 | 0.85 | 0.51 | 14929 | 1124 | 12 | 292 | 0 | 0 | 0 | logfile |
✔ | 6NP0 | 0469 | 2023-02-22 | 2019-01-17 | 2.92 | 3.16 | 3.01 | 3.1 | 0.011 | 1.23 | 0.0 | 0.08 | 10.32 | 0.01 | 2.270 | 3.63 | 0.55 | 5.2 | 94.8 | 0.0 | -3.90 | 0.69 | 0.72 | 2.76 | 3.1 | 0.003 | 0.64 | 0.0 | 0.05 | 14.52 | 0.00 | 2.216 | 5.67 | 3.56 | 3.0 | 97.0 | 0.0 | 0.24 | 0.84 | 0.79 | 0.85 | 2.63 | 16891 | 1975 | 20 | 0 | 41 | 0 | 0 | logfile |
✔ | 6NPH | 0470 | 2023-02-18 | 2019-01-17 | 2.9 | 3.11 | — | 3.2 | 0.012 | 1.42 | 0.0 | 0.06 | 17.82 | 0.01 | 2.292 | 5.02 | 4.67 | 7.9 | 92.1 | 0.0 | -4.29 | 0.53 | 0.71 | 1.66 | 3.2 | 0.004 | 0.66 | 0.0 | 0.04 | 17.40 | 0.00 | 2.224 | 6.39 | 2.27 | 6.8 | 93.2 | 0.0 | -0.33 | 0.92 | 0.59 | 0.84 | 2.98 | 7504 | 944 | 4 | 0 | 13 | 0 | 0 | logfile |
✔ | 6NPJ | 0471 | 2023-02-17 | 2019-01-17 | 3.8 | 3.73 | — | 3.7 | 0.008 | 1.24 | 0.0 | 0.07 | 17.12 | 0.01 | 2.246 | 6.91 | 6.25 | 8.8 | 91.2 | 0.0 | -5.64 | 0.62 | 0.77 | 2.47 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 17.43 | 0.00 | 2.278 | 10.04 | 0.30 | 6.1 | 93.9 | 0.0 | -2.01 | 0.85 | 0.63 | 0.78 | 2.22 | 6186 | 768 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NPK | 0472 | 2023-02-18 | 2019-01-17 | 3.6 | 3.66 | — | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 13.02 | 0.01 | 2.320 | 3.89 | 6.13 | 6.6 | 93.4 | 0.0 | -5.05 | 0.58 | 0.80 | 2.02 | 3.7 | 0.003 | 0.61 | 0.0 | 0.04 | 14.36 | 0.00 | 2.173 | 9.10 | 0.27 | 6.3 | 93.7 | 0.0 | 0.11 | 1.23 | 0.61 | 0.81 | 2.02 | 7134 | 944 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NPL | 0473 | 2023-02-21 | 2019-01-17 | 2.9 | 2.52 | — | 3.0 | 0.009 | 1.18 | 0.0 | 0.05 | 16.97 | 0.01 | 2.264 | 4.08 | 7.67 | 8.5 | 91.5 | 0.1 | -4.62 | 0.70 | 0.70 | 1.19 | 3.0 | 0.003 | 0.76 | 0.0 | 0.04 | 16.90 | 0.00 | 2.232 | 10.59 | 3.14 | 7.2 | 92.8 | 0.0 | -0.50 | 1.03 | 0.78 | 0.86 | 2.48 | 13774 | 1722 | 4 | 0 | 13 | 0 | 0 | logfile |
✔ | 6NPY | 0476 | 2023-02-18 | 2019-01-18 | 3.8 | 4.03 | — | 3.8 | 0.006 | 1.16 | 0.0 | 0.06 | 16.44 | 0.01 | 2.244 | 8.58 | 0.84 | 14.6 | 85.3 | 0.1 | -4.90 | 0.79 | 0.71 | 0.51 | 3.8 | 0.003 | 0.91 | 0.0 | 0.05 | 17.24 | 0.00 | 2.196 | 17.30 | 0.60 | 10.2 | 89.8 | 0.0 | -2.29 | 1.10 | 0.78 | 0.70 | 0.72 | 7586 | 965 | 3 | 0 | 1 | 0 | 0 | logfile |