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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7EWQ | 31361 | 2024-03-24 | 2021-05-25 | 3.5 | 3.98 | — | 3.7 | 0.006 | 0.78 | 0.0 | 0.04 | 15.96 | 0.00 | 0.473 | 31.00 | 0.00 | 6.7 | 93.3 | 0.0 | -3.42 | 0.74 | 0.73 | 2.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40144 | 4862 | 26 | 78 | 0 | 0 | 0 | logfile |
✔ | 5oA1 | 3727 | 2024-03-24 | 2017-06-20 | 4.4 | 5.36 | — | 4.5 | 0.027 | 1.76 | 1.0 | 0.07 | 19.19 | 0.01 | 0.473 | 26.25 | 8.67 | 5.4 | 93.4 | 1.2 | -1.92 | 0.70 | 0.49 | — | 4.6 | 0.011 | 0.80 | 0.0 | 0.05 | 15.82 | 0.00 | 2.025 | 23.93 | 0.00 | 5.5 | 94.3 | 0.2 | -0.13 | 3.30 | 0.78 | 0.66 | — | 43459 | 5668 | 39 | 105 | 7 | 0 | 0 | logfile |
✔ | 6FTJ | 4317 | 2024-03-28 | 2018-02-22 | 4.7 | 4.88 | — | 4.7 | 0.011 | 1.39 | 18.0 | 0.10 | 25.54 | 0.01 | 0.475 | 12.11 | 11.77 | 9.8 | 87.8 | 2.4 | -4.05 | 0.63 | 0.62 | — | 4.7 | 0.007 | 1.00 | 0.0 | 0.05 | 24.64 | 0.01 | 0.951 | 43.92 | 0.04 | 11.6 | 87.9 | 0.5 | -2.52 | 1.18 | 0.67 | 0.71 | — | 152111 | 8263 | 74 | 3938 | 461 | 0 | 0 | logfile |
✔ | 5M3F | 4147 | 2024-03-22 | 2016-10-14 | 3.8 | 3.88 | 3.92 | 3.9 | 0.006 | 0.89 | 0.0 | 0.05 | 11.85 | 0.01 | 0.477 | 14.25 | 1.14 | 6.6 | 93.1 | 0.3 | -3.19 | 0.59 | 0.74 | 2.61 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.22 | 0.00 | 2.004 | 9.66 | 3.39 | 5.3 | 94.7 | 0.0 | -0.92 | 1.66 | 0.64 | 0.79 | 1.67 | 34032 | 4161 | 22 | 47 | 8 | 0 | 0 | logfile |
✔ | 7U5D | 26348 | 2024-03-21 | 2022-03-02 | 3.52 | 3.22 | 3.45 | 3.4 | 0.013 | 1.65 | 1.0 | 0.09 | 15.66 | 0.01 | 0.483 | 10.61 | 0.20 | 3.2 | 96.7 | 0.2 | -0.43 | 0.86 | 0.79 | 3.11 | 3.4 | 0.004 | 0.66 | 0.0 | 0.04 | 17.30 | 0.00 | 2.189 | 5.28 | 1.28 | 4.7 | 95.3 | 0.0 | 0.00 | 0.75 | 0.89 | 0.86 | 2.82 | 31515 | 3603 | 13 | 141 | 0 | 0 | 0 | logfile |
✔ | 8HQo | 34952 | 2024-03-12 | 2022-12-13 | 3.2 | 3.45 | 3.81 | 4.0 | 0.006 | 0.79 | 0.0 | 0.05 | 13.20 | 0.01 | 0.497 | 6.45 | 0.00 | 2.6 | 97.4 | 0.0 | -1.42 | 0.54 | 0.57 | 0.18 | 3.4 | 0.006 | 0.72 | 0.0 | 0.04 | 16.25 | 0.00 | 1.867 | 40.29 | 2.90 | 5.3 | 94.7 | 0.0 | -0.16 | 1.76 | 0.64 | 0.81 | 1.38 | 62613 | 7656 | 33 | 0 | 0 | 0 | 1902 | logfile |
✔ | 7ASE | 11893 | 2024-03-17 | 2020-10-27 | 3.33 | 3.38 | — | 3.3 | 0.019 | 2.20 | 149.0 | 0.14 | 21.24 | 0.02 | 0.502 | 9.39 | 3.37 | 14.2 | 79.1 | 6.8 | -4.38 | 0.46 | 0.57 | 1.25 | 3.3 | 0.004 | 0.84 | 2.0 | 0.04 | 21.19 | 0.01 | 1.981 | 12.30 | 3.67 | 12.1 | 86.8 | 1.1 | -1.76 | 1.50 | 0.55 | 0.75 | 1.27 | 136847 | 11195 | 54 | 2225 | 3 | 0 | 0 | logfile |
✘ | 7L20 | 23121 | 2024-03-11 | 2020-12-15 | 3.15 | 3.39 | — | 3.4 | 0.007 | 0.87 | 0.0 | 0.05 | 20.07 | 0.01 | 0.505 | 10.97 | 0.84 | 7.3 | 92.2 | 0.5 | -3.38 | 0.69 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110234 | 9454 | 67 | 1583 | 171 | 0 | 0 | logfile |
✔ | 7X6U | 33027 | 2024-03-24 | 2022-03-08 | 4.5 | 4.59 | 4.67 | 4.5 | 0.004 | 0.94 | 0.0 | 0.05 | 13.23 | 0.01 | 0.507 | 29.62 | 0.00 | 10.1 | 89.3 | 0.6 | -3.46 | 0.38 | 0.58 | — | 4.5 | 0.005 | 0.89 | 0.0 | 0.05 | 13.23 | 0.01 | 2.142 | 21.52 | 0.00 | 12.0 | 87.6 | 0.3 | -3.35 | 0.54 | 0.38 | 0.57 | — | 39324 | 5328 | 24 | 0 | 30 | 0 | 0 | logfile |
✔ | 7URT | 26718 | 2024-03-10 | 2022-04-22 | 2.39 | 2.51 | 2.52 | 2.5 | 0.008 | 0.96 | 0.0 | 0.07 | 13.99 | 0.01 | 0.512 | 6.62 | 1.60 | 0.9 | 99.1 | 0.0 | 1.22 | 0.71 | 0.82 | 4.21 | 2.5 | 0.037 | 3.41 | 17.0 | 0.29 | 25.51 | 0.01 | 0.387 | 10.75 | 2.97 | 1.5 | 98.5 | 0.0 | 1.74 | 1.11 | 0.69 | 0.81 | 2.97 | 107880 | 13260 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 7TQL | 26067 | 2024-03-17 | 2022-01-26 | 3.2 | 2.54 | 3.55 | 2.8 | 0.012 | 1.50 | 15.0 | 0.11 | 21.71 | 0.00 | 0.514 | 4.09 | 1.16 | 6.6 | 92.8 | 0.6 | -2.65 | 0.71 | 0.76 | 2.00 | 2.8 | 0.005 | 0.68 | 0.0 | 0.04 | 22.18 | 0.00 | 2.093 | 11.00 | 4.40 | 5.5 | 94.4 | 0.1 | -0.46 | 0.45 | 0.79 | 0.81 | 1.69 | 80976 | 5508 | 43 | 1731 | 5 | 0 | 0 | logfile |
✔ | 6SPG | 10285 | 2024-03-20 | 2019-09-01 | 3.34 | 3.45 | — | 3.4 | 0.007 | 0.91 | 0.0 | 0.05 | 23.44 | 0.01 | 0.514 | 3.96 | 0.30 | 8.6 | 91.4 | 0.0 | -5.03 | 0.84 | 0.81 | 2.64 | 3.4 | 0.004 | 0.68 | 0.0 | 0.04 | 23.55 | 0.00 | 1.862 | 9.14 | 5.25 | 8.2 | 91.8 | 0.0 | -2.62 | 0.66 | 0.87 | 0.85 | 2.05 | 141963 | 5779 | 58 | 4526 | 172 | 0 | 0 | logfile |
✔ | 8CKW | 16704 | 2024-03-16 | 2023-02-16 | 3.12 | 3.53 | 3.07 | 3.4 | 0.005 | 0.87 | 0.0 | 0.08 | 12.55 | 0.01 | 0.523 | 4.81 | 0.00 | 0.0 | 100.0 | 0.0 | -0.70 | 0.57 | 0.82 | 3.51 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 17.11 | 0.00 | 2.141 | 10.30 | 1.07 | 1.0 | 99.0 | 0.0 | 1.63 | 1.19 | 0.58 | 0.85 | 2.29 | 13890 | 1785 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSL | 25409 | 2024-03-01 | 2021-11-11 | 3.8 | 3.94 | 4.31 | 3.8 | 0.009 | 1.02 | 0.0 | 0.08 | 23.03 | 0.01 | 0.524 | 13.12 | 1.11 | 12.6 | 87.2 | 0.2 | -5.13 | 0.76 | 0.73 | 0.87 | 3.8 | 0.005 | 0.75 | 0.0 | 0.04 | 23.72 | 0.01 | 1.996 | 23.74 | 7.46 | 12.8 | 87.1 | 0.1 | -3.31 | 0.66 | 0.78 | 0.75 | 0.75 | 153348 | 6626 | 59 | 4736 | 1 | 0 | 0 | logfile |
✘ | 7RL5 | 24516 | 2024-03-15 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✔ | 5iYD | 8138 | 2024-03-25 | 2016-03-24 | 3.9 | 3.83 | — | 3.9 | 0.011 | 1.73 | 8.0 | 0.08 | 17.39 | 0.01 | 0.526 | 22.15 | 3.28 | 8.5 | 87.8 | 3.8 | -2.10 | 0.70 | 0.62 | 1.39 | 3.8 | 0.005 | 0.99 | 0.0 | 0.05 | 19.53 | 0.01 | 1.784 | 24.35 | 3.97 | 9.2 | 90.1 | 0.7 | -1.10 | 1.15 | 0.80 | 0.80 | 1.11 | 46709 | 5407 | 31 | 166 | 13 | 0 | 0 | logfile |
✔ | 7T76 | 25735 | 2024-03-17 | 2021-12-14 | 4.43 | 4.68 | 4.39 | 4.5 | 0.022 | 1.97 | 2.0 | 0.14 | 12.89 | 0.02 | 0.530 | 1.29 | 0.77 | 3.4 | 96.4 | 0.3 | 0.31 | 0.81 | 0.80 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.05 | 11.71 | 0.00 | 1.029 | 10.98 | 0.00 | 4.6 | 95.4 | 0.1 | -0.42 | 1.87 | 0.81 | 0.81 | — | 16587 | 1934 | 42 | 0 | 104 | 0 | 0 | logfile |
✔ | 6QX9 | 4665 | 2024-03-19 | 2019-03-07 | 3.28 | 3.33 | — | 3.3 | 0.011 | 1.31 | 35.0 | 0.08 | 17.76 | 0.01 | 0.530 | 12.89 | 2.29 | 5.5 | 94.1 | 0.3 | -3.26 | 0.46 | 0.51 | 1.65 | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 18.32 | 0.00 | 1.852 | 16.21 | 2.38 | 5.1 | 94.8 | 0.1 | -0.47 | 0.85 | 0.50 | 0.61 | 1.66 | 137494 | 15560 | 77 | 565 | 36 | 0 | 0 | logfile |
✔ | 8TKH | 41351 | 2024-03-22 | 2023-07-25 | 3.5 | 4.26 | 3.69 | 3.9 | 0.002 | 0.44 | 0.0 | 0.04 | 15.91 | 0.00 | 0.530 | 13.82 | 0.09 | 1.3 | 98.7 | 0.0 | 3.61 | 0.80 | 0.74 | 1.44 | 3.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.62 | 0.00 | 1.887 | 10.39 | 1.99 | 2.7 | 97.3 | 0.0 | 2.38 | 2.06 | 0.83 | 0.84 | 1.39 | 145816 | 9072 | 8 | 0 | 12 | 0 | 72844 | logfile |
✔ | 8B3F | 15826 | 2024-03-19 | 2022-09-16 | 3.1 | 2.81 | 2.76 | 2.8 | 0.011 | 1.69 | 40.0 | 0.10 | 16.15 | 0.01 | 0.542 | 7.35 | 0.08 | 4.4 | 95.6 | 0.0 | -1.26 | 0.68 | 0.70 | 2.51 | 2.8 | 0.004 | 0.66 | 0.0 | 0.05 | 17.25 | 0.00 | 1.876 | 9.65 | 0.95 | 3.6 | 96.4 | 0.0 | -0.01 | 1.96 | 0.72 | 0.75 | 3.04 | 92036 | 5626 | 26 | 102 | 10 | 0 | 45119 | logfile |