Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JB7	6404	2023-11-16	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.69	0.0	0.04	15.29	0.00	2.179	11.30	0.53	2.7	97.2	0.1	0.16	0.89	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✘	6YAL	10760	2023-11-20	2020-03-12	3.0	3.10	—	3.1	0.022	2.10	46.0	0.12	14.86	0.02	0.805	11.97	2.62	10.0	86.1	3.9	-4.12	0.54	0.64	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	90085	6322	42	1861	5	0	0	logfile
✔	5GAK	3227	2023-11-18	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.003	0.83	0.0	0.04	19.62	0.01	1.977	24.30	0.53	9.4	90.1	0.4	-2.72	1.99	0.33	0.25	0.07	128975	6434	50	3597	234	0	0	logfile
✔	7S21	24815	2023-11-17	2021-09-02	3.4	3.86	—	3.8	0.006	0.78	0.0	0.04	15.50	0.01	0.827	18.73	0.00	14.6	85.4	0.0	-2.41	0.72	0.84	3.42	3.8	0.005	0.74	0.0	0.04	17.59	0.00	2.254	10.79	0.90	12.3	87.7	0.0	-1.07	0.50	0.74	0.86	2.76	122460	15900	60	0	0	0	0	logfile
✔	6ZM1	11277	2023-11-21	2020-07-01	4.7	4.57	—	4.3	0.007	0.91	0.0	0.06	16.15	0.01	0.828	14.04	0.55	6.5	93.3	0.2	-3.15	0.76	0.60	—	4.3	0.003	0.74	0.0	0.04	13.70	0.00	2.065	17.54	0.04	5.5	94.5	0.0	-1.03	1.24	0.86	0.79	—	22543	2844	4	0	0	0	0	logfile
✔	7TDG	25828	2023-11-16	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.84	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	114.0	0.16	19.71	0.02	1.714	88.48	3.87	38.2	59.5	2.3	-7.40	1.18	0.86	0.86	1.36	117345	12936	8	0	3624	0	0	logfile
✔	6W4o	21535	2023-11-20	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.78	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.75	0.0	0.05	13.01	0.00	2.134	21.61	0.00	2.4	97.4	0.2	0.49	1.35	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	7UGP	26493	2023-11-19	2022-03-25	4.2	3.87	4.16	3.5	0.006	1.00	1.0	0.07	13.73	0.01	0.835	6.55	0.52	6.7	93.3	0.0	-4.45	0.81	0.72	—	3.5	0.004	0.76	0.0	0.05	13.41	0.00	2.113	13.60	0.04	7.8	92.2	0.0	-2.46	2.10	0.85	0.78	—	25047	3096	34	0	66	0	0	logfile
✔	7UGN	26490	2023-11-19	2022-03-25	3.4	3.60	3.35	3.4	0.004	0.65	0.0	0.19	12.77	0.01	0.844	6.76	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	3.4	0.006	0.74	0.0	0.05	15.34	0.00	2.166	8.64	0.63	6.6	93.4	0.0	-1.85	1.00	0.84	0.88	2.39	25698	3150	49	0	87	0	0	logfile
✔	4Ui9	2924	2023-11-16	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.07	0.00	2.102	15.06	0.42	5.4	94.2	0.4	0.87	3.18	0.89	0.83	1.17	66453	8472	25	0	5	0	0	logfile
✔	7Ui9	26542	2023-11-15	2022-03-28	3.3	4.81	3.23	2.8	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.75	0.06	1.9	98.0	0.1	0.62	0.59	0.52	0.82	2.8	0.002	0.60	0.0	0.04	14.79	0.00	2.095	10.75	0.08	2.6	97.4	0.0	1.58	0.50	0.81	0.79	0.66	63137	7857	33	0	0	0	0	logfile
✔	7UiF	26544	2023-11-15	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.27	0.00	2.026	20.55	0.00	3.5	96.5	0.0	0.05	1.21	0.61	0.62	—	63137	7857	33	0	0	0	0	logfile
✔	7UiG	26545	2023-11-19	2022-03-29	4.3	8.24	4.32	3.9	0.005	0.80	0.0	0.05	12.88	0.01	0.850	11.11	0.09	1.3	98.5	0.1	1.54	0.45	0.44	—	3.9	0.011	0.85	0.0	0.04	12.99	0.01	2.065	23.76	0.00	3.7	96.3	0.0	0.65	0.85	0.58	0.79	—	27580	3390	17	0	0	0	0	logfile
✔	7LF2	23298	2023-11-21	2021-01-15	3.72	4.26	3.84	4.0	0.007	1.03	0.0	0.06	9.01	0.01	0.855	11.53	0.16	11.0	88.9	0.1	-4.07	0.80	0.70	1.81	4.0	0.004	0.76	0.0	0.05	12.61	0.00	1.374	21.01	0.27	9.9	90.0	0.1	-2.03	2.49	0.81	0.73	1.81	33798	4452	24	0	12	0	0	logfile
✔	8CXi	27058	2023-11-16	2022-05-21	3.4	3.96	3.26	3.9	0.008	0.97	5.0	0.09	12.96	0.01	0.857	26.16	3.00	9.6	89.7	0.7	-2.57	0.43	0.75	1.93	3.9	0.004	0.76	0.0	0.05	15.60	0.00	2.124	10.87	0.22	10.4	89.5	0.1	-1.18	1.23	0.29	0.73	1.31	16832	2196	12	0	8	0	0	logfile
✔	6PX3	20517	2023-11-16	2019-07-24	4.1	5.90	—	4.1	0.008	0.94	0.0	0.06	26.81	0.01	0.861	4.63	0.45	4.5	95.5	0.1	-0.93	0.89	0.79	—	4.1	0.004	0.70	0.0	0.04	27.54	0.00	2.126	18.93	0.11	4.4	95.6	0.0	-0.32	2.47	0.90	0.81	—	14323	1059	11	290	3	0	0	logfile
✔	7Z12	14438	2023-11-17	2022-02-24	3.0	3.83	—	3.4	0.007	1.03	1.0	0.06	15.28	0.01	0.865	31.24	1.37	15.0	83.9	1.1	-3.04	0.84	0.81	1.95	3.4	0.004	0.84	0.0	0.05	16.54	0.00	2.111	22.04	1.32	12.8	87.0	0.2	-1.76	0.58	0.83	0.83	1.54	18352	2286	3	0	0	0	0	logfile
✔	5LMo	4074	2023-11-13	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.80	0.0	0.04	16.93	0.01	0.957	39.06	0.00	9.6	89.9	0.5	-1.93	2.18	0.88	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	5VGZ	8672	2023-11-18	2017-04-12	4.5	4.22	—	3.7	0.005	1.13	1.0	0.06	11.28	0.01	0.875	16.03	0.81	7.5	92.1	0.4	-4.68	0.72	0.72	—	3.7	0.004	0.80	0.0	0.05	12.75	0.01	2.034	26.57	0.00	9.6	90.3	0.0	-1.78	1.73	0.74	0.78	—	36741	4603	18	0	1	0	0	logfile
✔	5FN1	3236	2023-11-14	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.11	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile

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