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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JB7 | 6404 | 2023-11-16 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 10.78 | 0.00 | 0.793 | 10.58 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 15.29 | 0.00 | 2.179 | 11.30 | 0.53 | 2.7 | 97.2 | 0.1 | 0.16 | 0.89 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✘ | 6YAL | 10760 | 2023-11-20 | 2020-03-12 | 3.0 | 3.10 | — | 3.1 | 0.022 | 2.10 | 46.0 | 0.12 | 14.86 | 0.02 | 0.805 | 11.97 | 2.62 | 10.0 | 86.1 | 3.9 | -4.12 | 0.54 | 0.64 | 1.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 90085 | 6322 | 42 | 1861 | 5 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2023-11-18 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.89 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 4.0 | 0.003 | 0.83 | 0.0 | 0.04 | 19.62 | 0.01 | 1.977 | 24.30 | 0.53 | 9.4 | 90.1 | 0.4 | -2.72 | 1.99 | 0.33 | 0.25 | 0.07 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |
✔ | 7S21 | 24815 | 2023-11-17 | 2021-09-02 | 3.4 | 3.86 | — | 3.8 | 0.006 | 0.78 | 0.0 | 0.04 | 15.50 | 0.01 | 0.827 | 18.73 | 0.00 | 14.6 | 85.4 | 0.0 | -2.41 | 0.72 | 0.84 | 3.42 | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 17.59 | 0.00 | 2.254 | 10.79 | 0.90 | 12.3 | 87.7 | 0.0 | -1.07 | 0.50 | 0.74 | 0.86 | 2.76 | 122460 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZM1 | 11277 | 2023-11-21 | 2020-07-01 | 4.7 | 4.57 | — | 4.3 | 0.007 | 0.91 | 0.0 | 0.06 | 16.15 | 0.01 | 0.828 | 14.04 | 0.55 | 6.5 | 93.3 | 0.2 | -3.15 | 0.76 | 0.60 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 13.70 | 0.00 | 2.065 | 17.54 | 0.04 | 5.5 | 94.5 | 0.0 | -1.03 | 1.24 | 0.86 | 0.79 | — | 22543 | 2844 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TDG | 25828 | 2023-11-16 | 2021-12-31 | 3.8 | 4.00 | 3.85 | 3.8 | 0.086 | 0.81 | 1.0 | 0.04 | 13.97 | 0.00 | 0.831 | 7.84 | 0.28 | 6.6 | 93.4 | 0.1 | -0.49 | 0.83 | 0.79 | 0.99 | 3.8 | 0.056 | 3.18 | 114.0 | 0.16 | 19.71 | 0.02 | 1.714 | 88.48 | 3.87 | 38.2 | 59.5 | 2.3 | -7.40 | 1.18 | 0.86 | 0.86 | 1.36 | 117345 | 12936 | 8 | 0 | 3624 | 0 | 0 | logfile |
✔ | 6W4o | 21535 | 2023-11-20 | 2020-03-11 | 4.8 | 5.05 | 4.72 | 4.7 | 0.004 | 0.78 | 1.0 | 0.05 | 10.85 | 0.00 | 0.834 | 15.75 | 0.91 | 3.0 | 96.7 | 0.2 | -1.53 | 0.83 | 0.70 | — | 4.7 | 0.004 | 0.75 | 0.0 | 0.05 | 13.01 | 0.00 | 2.134 | 21.61 | 0.00 | 2.4 | 97.4 | 0.2 | 0.49 | 1.35 | 0.89 | 0.82 | — | 14475 | 1789 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UGP | 26493 | 2023-11-19 | 2022-03-25 | 4.2 | 3.87 | 4.16 | 3.5 | 0.006 | 1.00 | 1.0 | 0.07 | 13.73 | 0.01 | 0.835 | 6.55 | 0.52 | 6.7 | 93.3 | 0.0 | -4.45 | 0.81 | 0.72 | — | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 13.41 | 0.00 | 2.113 | 13.60 | 0.04 | 7.8 | 92.2 | 0.0 | -2.46 | 2.10 | 0.85 | 0.78 | — | 25047 | 3096 | 34 | 0 | 66 | 0 | 0 | logfile |
✔ | 7UGN | 26490 | 2023-11-19 | 2022-03-25 | 3.4 | 3.60 | 3.35 | 3.4 | 0.004 | 0.65 | 0.0 | 0.19 | 12.77 | 0.01 | 0.844 | 6.76 | 0.11 | 4.5 | 95.5 | 0.0 | -3.47 | 0.83 | 0.84 | 2.43 | 3.4 | 0.006 | 0.74 | 0.0 | 0.05 | 15.34 | 0.00 | 2.166 | 8.64 | 0.63 | 6.6 | 93.4 | 0.0 | -1.85 | 1.00 | 0.84 | 0.88 | 2.39 | 25698 | 3150 | 49 | 0 | 87 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2023-11-16 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.003 | 0.81 | 0.0 | 0.04 | 17.07 | 0.00 | 2.102 | 15.06 | 0.42 | 5.4 | 94.2 | 0.4 | 0.87 | 3.18 | 0.89 | 0.83 | 1.17 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 7Ui9 | 26542 | 2023-11-15 | 2022-03-28 | 3.3 | 4.81 | 3.23 | 2.8 | 0.004 | 0.69 | 0.0 | 0.05 | 13.63 | 0.01 | 0.850 | 9.75 | 0.06 | 1.9 | 98.0 | 0.1 | 0.62 | 0.59 | 0.52 | 0.82 | 2.8 | 0.002 | 0.60 | 0.0 | 0.04 | 14.79 | 0.00 | 2.095 | 10.75 | 0.08 | 2.6 | 97.4 | 0.0 | 1.58 | 0.50 | 0.81 | 0.79 | 0.66 | 63137 | 7857 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiF | 26544 | 2023-11-15 | 2022-03-29 | 4.6 | 5.63 | 4.34 | 6.7 | 0.004 | 0.69 | 0.0 | 0.05 | 13.63 | 0.01 | 0.850 | 9.76 | 0.06 | 1.9 | 98.0 | 0.1 | 0.62 | 0.48 | 0.33 | — | 6.7 | 0.003 | 0.75 | 0.0 | 0.05 | 13.27 | 0.00 | 2.026 | 20.55 | 0.00 | 3.5 | 96.5 | 0.0 | 0.05 | 1.21 | 0.61 | 0.62 | — | 63137 | 7857 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiG | 26545 | 2023-11-19 | 2022-03-29 | 4.3 | 8.24 | 4.32 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 12.88 | 0.01 | 0.850 | 11.11 | 0.09 | 1.3 | 98.5 | 0.1 | 1.54 | 0.45 | 0.44 | — | 3.9 | 0.011 | 0.85 | 0.0 | 0.04 | 12.99 | 0.01 | 2.065 | 23.76 | 0.00 | 3.7 | 96.3 | 0.0 | 0.65 | 0.85 | 0.58 | 0.79 | — | 27580 | 3390 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LF2 | 23298 | 2023-11-21 | 2021-01-15 | 3.72 | 4.26 | 3.84 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 9.01 | 0.01 | 0.855 | 11.53 | 0.16 | 11.0 | 88.9 | 0.1 | -4.07 | 0.80 | 0.70 | 1.81 | 4.0 | 0.004 | 0.76 | 0.0 | 0.05 | 12.61 | 0.00 | 1.374 | 21.01 | 0.27 | 9.9 | 90.0 | 0.1 | -2.03 | 2.49 | 0.81 | 0.73 | 1.81 | 33798 | 4452 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 8CXi | 27058 | 2023-11-16 | 2022-05-21 | 3.4 | 3.96 | 3.26 | 3.9 | 0.008 | 0.97 | 5.0 | 0.09 | 12.96 | 0.01 | 0.857 | 26.16 | 3.00 | 9.6 | 89.7 | 0.7 | -2.57 | 0.43 | 0.75 | 1.93 | 3.9 | 0.004 | 0.76 | 0.0 | 0.05 | 15.60 | 0.00 | 2.124 | 10.87 | 0.22 | 10.4 | 89.5 | 0.1 | -1.18 | 1.23 | 0.29 | 0.73 | 1.31 | 16832 | 2196 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6PX3 | 20517 | 2023-11-16 | 2019-07-24 | 4.1 | 5.90 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.06 | 26.81 | 0.01 | 0.861 | 4.63 | 0.45 | 4.5 | 95.5 | 0.1 | -0.93 | 0.89 | 0.79 | — | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 27.54 | 0.00 | 2.126 | 18.93 | 0.11 | 4.4 | 95.6 | 0.0 | -0.32 | 2.47 | 0.90 | 0.81 | — | 14323 | 1059 | 11 | 290 | 3 | 0 | 0 | logfile |
✔ | 7Z12 | 14438 | 2023-11-17 | 2022-02-24 | 3.0 | 3.83 | — | 3.4 | 0.007 | 1.03 | 1.0 | 0.06 | 15.28 | 0.01 | 0.865 | 31.24 | 1.37 | 15.0 | 83.9 | 1.1 | -3.04 | 0.84 | 0.81 | 1.95 | 3.4 | 0.004 | 0.84 | 0.0 | 0.05 | 16.54 | 0.00 | 2.111 | 22.04 | 1.32 | 12.8 | 87.0 | 0.2 | -1.76 | 0.58 | 0.83 | 0.83 | 1.54 | 18352 | 2286 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2023-11-13 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.80 | 0.0 | 0.04 | 16.93 | 0.01 | 0.957 | 39.06 | 0.00 | 9.6 | 89.9 | 0.5 | -1.93 | 2.18 | 0.88 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 5VGZ | 8672 | 2023-11-18 | 2017-04-12 | 4.5 | 4.22 | — | 3.7 | 0.005 | 1.13 | 1.0 | 0.06 | 11.28 | 0.01 | 0.875 | 16.03 | 0.81 | 7.5 | 92.1 | 0.4 | -4.68 | 0.72 | 0.72 | — | 3.7 | 0.004 | 0.80 | 0.0 | 0.05 | 12.75 | 0.01 | 2.034 | 26.57 | 0.00 | 9.6 | 90.3 | 0.0 | -1.78 | 1.73 | 0.74 | 0.78 | — | 36741 | 4603 | 18 | 0 | 1 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2023-11-14 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 16.79 | 0.01 | 1.856 | 24.11 | 1.08 | 13.3 | 85.7 | 1.0 | -1.33 | 2.15 | 0.41 | 0.75 | 0.99 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |