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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6QPi | 4614 | 2023-12-07 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL7 | 16953 | 2023-12-07 | 2023-03-30 | 3.0 | 3.28 | 2.45 | 3.4 | 0.006 | 0.81 | 0.0 | 0.07 | 13.04 | 0.00 | 2.619 | 10.11 | 0.00 | 3.3 | 96.7 | 0.0 | -2.92 | 0.50 | 0.79 | 5.15 | 3.4 | 0.006 | 0.75 | 0.0 | 0.06 | 15.85 | 0.00 | 2.444 | 13.55 | 0.00 | 7.7 | 92.3 | 0.0 | -2.76 | 0.96 | 0.44 | 0.81 | 5.70 | 2320 | 320 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLo | 16960 | 2023-12-07 | 2023-03-30 | 3.5 | 3.16 | 3.18 | 3.4 | 0.005 | 0.87 | 0.0 | 0.07 | 11.69 | 0.01 | 2.375 | 9.87 | 0.00 | 6.9 | 93.1 | 0.0 | -3.19 | 0.37 | 0.76 | 5.66 | 3.2 | 0.004 | 0.74 | 0.0 | 0.06 | 16.37 | 0.00 | 2.279 | 12.45 | 0.83 | 5.9 | 94.1 | 0.0 | -3.02 | 1.24 | 0.40 | 0.78 | 2.82 | 2330 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K5D | 36902 | 2023-12-07 | 2023-07-21 | 3.74 | 3.93 | 3.66 | 3.9 | 0.007 | 0.76 | 0.0 | 0.04 | 19.08 | 0.00 | 2.203 | 11.34 | 0.40 | 5.9 | 94.1 | 0.0 | 0.46 | 0.52 | 0.79 | 2.10 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 19.59 | 0.00 | 2.307 | 10.91 | 0.40 | 6.2 | 93.8 | 0.0 | 0.32 | 0.26 | 0.52 | 0.79 | 2.01 | 2345 | 291 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Q3U | 13795 | 2023-12-07 | 2021-10-28 | 3.7 | 3.43 | 3.48 | 4.1 | 0.005 | 1.17 | 0.0 | 0.05 | 16.84 | 0.01 | 2.120 | 36.48 | 0.00 | 10.7 | 89.3 | 0.0 | -5.79 | 0.23 | 0.47 | 0.88 | 4.0 | 0.004 | 0.92 | 0.0 | 0.04 | 18.42 | 0.01 | 2.192 | 28.03 | 0.00 | 14.8 | 85.2 | 0.0 | -6.03 | 2.22 | 0.34 | 0.60 | 2.69 | 2355 | 355 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNT | 33971 | 2023-12-07 | 2022-07-31 | 3.1 | 2.98 | 2.27 | 4.1 | 0.004 | 0.59 | 0.0 | 0.06 | 11.35 | 0.00 | 2.275 | 13.34 | 0.00 | 8.9 | 91.1 | 0.0 | -5.55 | 0.42 | 0.70 | 4.17 | 4.1 | 0.003 | 0.65 | 0.0 | 0.06 | 13.89 | 0.00 | 2.253 | 12.32 | 0.00 | 10.7 | 89.3 | 0.0 | -4.65 | 0.46 | 0.36 | 0.63 | 3.65 | 2364 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8K5B | 36900 | 2023-12-07 | 2023-07-21 | 3.43 | 3.67 | 3.31 | 3.6 | 0.004 | 0.72 | 0.0 | 0.05 | 17.22 | 0.00 | 2.213 | 12.54 | 1.18 | 5.5 | 94.5 | 0.0 | 0.37 | 0.48 | 0.77 | 1.68 | 3.6 | 0.003 | 0.66 | 0.0 | 0.05 | 17.71 | 0.00 | 2.249 | 11.49 | 0.39 | 5.2 | 94.8 | 0.0 | 0.75 | 0.31 | 0.49 | 0.78 | 1.97 | 2374 | 291 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7V4D | 31708 | 2023-12-07 | 2021-08-12 | 3.5 | 3.38 | — | 4.0 | 0.003 | 0.54 | 0.0 | 0.05 | 11.89 | 0.00 | 2.234 | 14.44 | 0.00 | 7.1 | 92.9 | 0.0 | -5.68 | 0.41 | 0.80 | 4.67 | 4.1 | 0.003 | 0.67 | 0.0 | 0.05 | 13.01 | 0.00 | 2.208 | 8.66 | 0.00 | 9.2 | 90.8 | 0.0 | -3.61 | 1.19 | 0.42 | 0.80 | 4.19 | 2376 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M62 | 23687 | 2023-12-07 | 2021-03-25 | 3.9 | 3.91 | — | 4.3 | 0.065 | 1.13 | 0.0 | 0.07 | 14.83 | 0.00 | 2.321 | 32.83 | 0.00 | 23.3 | 76.7 | 0.0 | -4.97 | 0.55 | 0.62 | 2.27 | 4.2 | 0.003 | 0.95 | 0.0 | 0.05 | 15.86 | 0.00 | 2.112 | 24.41 | 0.00 | 23.0 | 77.0 | 0.0 | -4.78 | 2.77 | 0.57 | 0.65 | 3.88 | 2380 | 320 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2023-12-07 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZQ | 24774 | 2023-12-07 | 2021-08-27 | 2.09 | 2.26 | — | 2.7 | 0.006 | 0.40 | 0.0 | 0.03 | 14.23 | 0.00 | 2.339 | 4.69 | 0.00 | 1.9 | 98.1 | 0.0 | 2.15 | 0.78 | 0.79 | 1.56 | 2.0 | 0.003 | 0.31 | 0.0 | 0.03 | 15.07 | 0.00 | 2.343 | 5.71 | 0.00 | 0.0 | 100.0 | 0.0 | 5.84 | 0.30 | 0.82 | 0.82 | 2.01 | 2421 | 322 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GZ9 | 34393 | 2023-12-07 | 2022-09-26 | 2.62 | 2.44 | 2.40 | 2.4 | 0.003 | 0.69 | 0.0 | 0.06 | 14.01 | 0.00 | 2.670 | 1.93 | 0.00 | 0.3 | 99.7 | 0.0 | -0.15 | 0.28 | 0.90 | 7.26 | 2.4 | 0.002 | 0.57 | 0.0 | 0.06 | 14.29 | 0.00 | 2.672 | 0.77 | 1.77 | 0.3 | 99.7 | 0.0 | -0.16 | 0.26 | 0.28 | 0.91 | 7.94 | 2426 | 390 | 58 | 0 | 0 | 24 | 0 | logfile |
✔ | 7L7H | 23212 | 2023-12-07 | 2020-12-28 | 4.0 | 2.39 | — | 4.0 | 0.008 | 1.47 | 0.0 | 0.08 | 15.10 | 0.01 | 2.199 | 13.87 | 3.53 | 36.3 | 63.7 | 0.0 | -6.00 | 0.47 | 0.60 | — | 4.0 | 0.004 | 0.94 | 0.0 | 0.06 | 16.29 | 0.00 | 2.073 | 19.50 | 1.96 | 27.7 | 72.3 | 0.0 | -4.33 | 0.93 | 0.51 | 0.65 | — | 2430 | 352 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9A | 24253 | 2023-12-07 | 2021-06-17 | 3.5 | 2.68 | — | 2.4 | 0.007 | 1.26 | 0.0 | 0.06 | 12.63 | 0.01 | 2.135 | 19.96 | 0.00 | 2.9 | 97.1 | 0.0 | -0.16 | 0.72 | 0.70 | 2.72 | 2.4 | 0.003 | 0.68 | 0.0 | 0.04 | 15.36 | 0.01 | 2.150 | 14.08 | 0.39 | 3.6 | 96.4 | 0.0 | -0.97 | 0.55 | 0.73 | 0.70 | 2.00 | 2431 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TJo | 10512 | 2023-12-07 | 2019-11-26 | 3.2 | 3.43 | 2.57 | 3.5 | 0.013 | 1.18 | 0.0 | 0.07 | 9.67 | 0.01 | 2.394 | 2.20 | 0.00 | 12.7 | 87.3 | 0.0 | -4.63 | 0.36 | 0.76 | 4.64 | 3.5 | 0.003 | 0.74 | 0.0 | 0.05 | 12.71 | 0.00 | 2.308 | 6.81 | 0.00 | 5.4 | 94.6 | 0.0 | -3.46 | 1.41 | 0.34 | 0.75 | 4.46 | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VHA | 21201 | 2023-12-07 | 2020-01-09 | 4.3 | 4.35 | — | 7.8 | 0.007 | 1.02 | 0.0 | 0.05 | 15.14 | 0.01 | 2.319 | 26.84 | 2.13 | 12.4 | 87.6 | 0.0 | -4.78 | 0.55 | 0.54 | — | 4.1 | 0.003 | 0.74 | 0.0 | 0.05 | 13.40 | 0.00 | 2.336 | 12.82 | 0.00 | 9.8 | 90.2 | 0.0 | -4.37 | 3.38 | 0.57 | 0.60 | — | 2439 | 321 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZU | 24778 | 2023-12-07 | 2021-08-27 | 2.3 | 2.32 | — | 2.0 | 0.006 | 0.50 | 0.0 | 0.04 | 13.61 | 0.01 | 2.212 | 7.50 | 0.00 | 2.9 | 97.1 | 0.0 | 1.69 | 0.77 | 0.78 | 1.84 | 2.0 | 0.002 | 0.48 | 0.0 | 0.03 | 15.88 | 0.00 | 2.308 | 6.69 | 1.40 | 0.0 | 100.0 | 0.0 | 5.49 | 0.47 | 0.80 | 0.81 | 1.54 | 2439 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZS | 24776 | 2023-12-07 | 2021-08-27 | 2.52 | 2.32 | — | 2.1 | 0.005 | 0.46 | 0.0 | 0.03 | 14.73 | 0.00 | 2.273 | 3.04 | 0.00 | 1.0 | 99.0 | 0.0 | 1.98 | 0.77 | 0.79 | 1.82 | 2.0 | 0.003 | 0.42 | 0.0 | 0.04 | 16.16 | 0.00 | 2.327 | 4.66 | 0.35 | 0.0 | 100.0 | 0.0 | 5.95 | 1.19 | 0.79 | 0.82 | 1.19 | 2445 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2023-12-07 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.6 | 0.002 | 0.45 | 0.0 | 0.05 | 13.95 | 0.00 | 2.206 | 8.61 | 3.20 | 6.0 | 94.0 | 0.0 | -1.52 | 1.10 | 0.24 | 0.71 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 7RZR | 24775 | 2023-12-07 | 2021-08-27 | 2.27 | 2.24 | — | 2.0 | 0.007 | 0.40 | 0.0 | 0.04 | 14.34 | 0.00 | 2.436 | 3.23 | 0.00 | 1.9 | 98.1 | 0.0 | 2.50 | 0.79 | 0.80 | 3.37 | 2.0 | 0.002 | 0.36 | 0.0 | 0.03 | 15.29 | 0.00 | 2.294 | 4.44 | 0.71 | 0.0 | 100.0 | 0.0 | 6.53 | 0.31 | 0.81 | 0.83 | 3.42 | 2448 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |