Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EZ0	31385	2023-11-14	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.68	0.0	0.04	15.56	0.00	1.860	8.26	0.00	0.0	0.0	0.0	—	1.91	0.76	0.85	—	8306	0	1	387	27	0	0	logfile
✔	7N77	24222	2023-11-14	2021-06-09	3.2	4.05	3.31	3.7	0.006	1.31	0.0	0.06	12.82	0.01	1.692	9.63	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.003	0.89	0.0	0.04	13.91	0.00	2.016	6.14	0.14	2.1	97.9	0.0	2.12	1.62	0.68	0.82	0.92	7470	1036	1	0	4	2	0	logfile
✔	6WBY	21601	2023-11-14	2020-03-27	3.4	3.73	3.45	3.6	0.010	1.04	0.0	0.06	12.68	0.01	2.042	3.28	0.32	6.3	93.6	0.1	-5.12	0.78	0.87	3.21	3.6	0.003	0.64	0.0	0.05	13.49	0.00	2.197	5.85	0.00	5.0	95.0	0.0	-0.51	0.36	0.77	0.87	2.48	9156	1250	1	0	2	0	0	logfile
✔	7W7W	32350	2023-11-14	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.74	0.00	1.537	8.97	0.23	3.9	96.1	0.0	0.72	0.38	0.58	0.75	1.99	7870	1018	1	0	2	0	0	logfile
✔	7FiJ	31599	2023-11-13	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	6SKZ	10232	2023-11-18	2019-08-16	3.4	3.55	—	3.5	0.011	0.82	1.0	0.05	14.81	0.01	1.872	8.66	5.39	7.4	92.5	0.1	-3.09	0.72	0.81	1.81	3.5	0.003	0.60	0.0	0.04	16.15	0.00	2.146	7.38	0.35	4.4	95.6	0.0	1.33	0.75	0.73	0.84	1.72	20930	2638	1	0	2	0	0	logfile
✔	6KWX	0780	2023-11-16	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.17	13.00	0.01	1.627	13.84	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	4.0	0.004	0.88	0.0	0.05	17.29	0.00	2.112	16.75	0.31	7.3	92.7	0.1	-0.73	1.13	0.68	0.80	1.07	14227	1751	1	0	2	0	0	logfile
✔	5LY6	4118	2023-11-13	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	6LLE	0912	2023-11-14	2019-12-23	2.9	3.06	2.85	3.0	0.005	0.63	0.0	0.04	12.59	0.00	2.050	6.54	0.00	2.7	97.3	0.0	-1.87	0.67	0.82	3.28	3.0	0.002	0.56	0.0	0.04	16.67	0.00	2.092	7.67	1.95	2.1	97.9	0.0	0.63	0.45	0.68	0.84	2.79	7916	1020	1	0	4	0	0	logfile
✔	7DV5	30870	2023-11-14	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.002	0.66	0.0	0.04	16.09	0.00	2.213	9.45	0.30	6.7	93.3	0.0	-3.47	1.63	0.63	0.78	0.87	9319	1189	1	0	2	0	0	logfile
✘	7RAV	24387	2023-11-13	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	7PZR	13736	2023-11-16	2021-10-13	3.0	3.57	—	3.3	0.004	0.71	0.0	0.04	12.71	0.01	2.062	11.63	0.00	1.5	98.5	0.0	3.84	0.77	0.69	1.43	3.3	0.005	0.89	0.0	0.05	16.07	0.01	2.079	21.17	1.77	2.0	98.0	0.0	1.77	2.50	0.80	0.77	0.93	7404	935	1	0	0	0	0	logfile
✔	8ET9	28589	2023-11-14	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.003	0.58	0.0	0.03	14.29	0.00	1.959	10.28	0.26	3.7	96.3	0.0	0.86	4.56	0.47	0.68	2.12	7685	517	1	0	1	0	3796	logfile
✘	7Y7W	33672	2023-11-13	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✔	7WLi	32584	2023-11-14	2022-01-13	3.3	3.59	—	3.6	0.012	1.01	1.0	0.06	14.88	0.01	1.888	15.00	0.20	7.3	92.5	0.2	-0.17	0.59	0.78	2.16	3.6	0.004	0.70	0.0	0.04	16.29	0.00	2.141	14.63	0.30	6.1	93.9	0.0	0.64	0.51	0.59	0.78	1.73	9493	1135	1	0	21	0	0	logfile
✔	7WNX	32634	2023-11-15	2022-01-20	3.36	3.85	—	3.7	0.033	0.94	0.0	0.18	14.67	0.00	2.209	8.77	0.50	8.2	91.5	0.3	-2.32	0.64	0.83	1.69	3.7	0.005	0.77	0.0	0.09	15.47	0.01	1.773	19.73	0.33	8.2	91.8	0.0	-1.84	0.34	0.66	0.85	1.55	5643	734	1	0	1	0	0	logfile
✔	5M5H	4155	2023-11-13	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7WiT	32535	2023-11-14	2022-01-04	3.21	3.87	3.47	3.8	0.005	0.57	0.0	0.04	10.80	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.002	0.51	0.0	0.04	13.61	0.00	2.200	4.97	0.68	1.9	98.1	0.0	1.83	0.65	0.61	0.79	1.39	8109	1133	1	0	2	0	0	logfile
✔	7XD4	33135	2023-11-14	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	15.73	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.78	0.0	0.04	17.52	0.01	1.755	18.36	0.00	0.0	0.0	0.0	—	1.84	0.87	0.78	—	9062	0	1	423	28	0	0	logfile
✔	7ADJ	11727	2023-11-14	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.64	0.0	0.04	17.18	0.00	2.131	7.52	2.57	7.9	92.1	0.0	-1.24	1.53	0.40	0.77	2.99	9710	613	1	0	0	0	4790	logfile

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