Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7B52	12017	2023-04-22	2020-12-03	3.8	4.98	—	3.9	0.004	0.84	0.0	0.04	14.20	0.00	2.035	24.47	0.07	16.4	83.4	0.2	-2.23	0.83	0.84	0.97	3.9	0.003	0.72	0.0	0.04	15.17	0.00	2.105	18.54	0.21	13.6	86.3	0.1	-1.29	0.92	0.83	0.83	0.73	13186	1638	1	0	0	0	0	logfile
✔	7E7S	31003	2023-04-20	2021-02-27	3.3	3.32	3.27	3.4	0.003	0.50	0.0	0.04	14.41	0.00	2.166	8.26	0.00	2.6	97.4	0.0	-0.13	0.68	0.82	1.44	3.3	0.002	0.53	0.0	0.04	15.91	0.00	2.219	8.70	0.00	3.3	96.7	0.0	1.42	1.29	0.66	0.82	0.60	7884	1020	1	0	2	0	0	logfile
✔	7FAS	31505	2023-04-21	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.003	0.54	0.0	0.04	17.25	0.00	2.192	9.70	0.18	4.1	95.9	0.0	1.07	0.43	0.73	0.75	0.97	10173	1229	1	0	0	0	0	logfile
✔	5UAR	8461	2023-04-21	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.4	0.003	0.72	0.0	0.04	16.08	0.00	2.142	10.48	0.39	4.6	95.4	0.0	-0.29	1.53	0.61	0.80	0.97	9489	1184	1	0	2	0	0	logfile
✔	8DWi	27755	2023-04-19	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.74	0.0	0.04	16.17	0.01	2.113	11.24	0.64	5.0	95.0	0.0	-0.32	1.76	0.49	0.73	1.52	3192	424	1	0	0	0	0	logfile
✔	8DRQ	27681	2023-04-20	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7URi	26713	2023-04-19	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	8F7J	28905	2023-04-20	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	7UVK	26812	2023-04-21	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.003	0.68	0.0	0.04	16.31	0.00	2.075	11.69	0.61	9.4	90.6	0.0	-2.27	1.11	0.71	0.87	2.85	10350	1295	1	0	0	0	0	logfile
✔	7URM	26714	2023-04-19	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	23.67	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.16	0.0	0.05	22.87	0.01	1.983	29.94	0.00	0.0	0.0	0.0	—	1.70	0.15	0.54	—	1905	0	1	90	0	0	0	logfile
✔	7oJJ	12953	2023-04-23	2021-05-16	3.5	4.03	3.58	3.5	0.006	0.66	2.0	0.06	13.63	0.00	2.009	9.47	0.12	11.4	88.6	0.0	-3.69	0.92	0.87	2.01	3.5	0.003	0.60	0.0	0.04	14.79	0.00	2.000	8.25	0.06	7.7	92.3	0.0	-0.47	0.98	0.92	0.88	1.67	14330	1785	1	0	2	0	0	logfile
✔	8GoE	34176	2023-04-20	2022-08-24	3.0	3.01	3.02	3.1	0.006	0.76	1.0	0.05	12.65	0.01	2.273	6.40	0.57	2.0	98.0	0.0	-6.19	0.46	0.82	4.16	3.1	0.003	0.63	1.0	0.04	14.15	0.00	2.175	7.73	1.70	2.5	97.5	0.0	0.94	0.42	0.45	0.83	3.08	3323	407	1	0	1	0	0	logfile
✔	7Mi6	23841	2023-04-29	2021-04-16	3.9	4.23	3.91	4.0	0.012	1.49	3.0	0.08	13.51	0.01	2.027	6.46	1.32	5.3	94.3	0.4	-2.30	0.84	0.82	1.35	4.0	0.003	0.75	0.0	0.04	16.29	0.00	1.991	14.50	0.14	3.1	96.8	0.0	0.58	1.19	0.85	0.83	1.41	19653	2419	1	0	4	0	0	logfile
✔	6YJ5	10816	2023-04-19	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	7NVH	12604	2023-04-20	2021-03-15	3.0	3.23	3.00	3.2	0.006	0.73	0.0	0.05	14.27	0.01	2.145	7.79	0.69	5.6	94.4	0.0	-0.42	0.64	0.86	2.63	3.2	0.002	0.57	0.0	0.04	15.32	0.00	2.246	7.08	0.87	4.3	95.7	0.0	0.81	0.33	0.64	0.87	2.42	5528	717	1	0	1	0	0	logfile
✔	7XQ2	33389	2023-04-20	2022-05-06	3.3	3.45	3.15	3.5	0.007	0.79	1.0	0.05	15.54	0.01	2.244	6.48	0.85	3.7	96.3	0.0	-6.96	0.56	0.83	4.29	3.5	0.003	0.58	0.0	0.04	16.35	0.00	2.217	8.10	0.00	3.0	97.0	0.0	0.34	2.06	0.44	0.78	3.44	3377	409	1	0	2	0	0	logfile
✔	6ZFP	11185	2023-04-29	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	9.71	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.002	0.61	0.0	0.04	15.64	0.00	2.202	7.49	0.22	5.8	94.1	0.1	0.31	0.76	0.80	0.77	1.22	29385	3676	1	0	28	0	0	logfile
✔	8EiG	28155	2023-04-21	2022-09-15	3.6	2.88	3.69	3.4	0.006	1.05	0.0	0.04	12.55	0.00	1.883	2.03	1.91	2.5	97.4	0.1	-0.77	0.61	0.79	2.59	3.4	0.002	0.54	0.0	0.04	15.46	0.00	2.025	5.08	0.20	3.5	96.4	0.1	0.93	0.67	0.59	0.80	1.56	9249	1141	1	0	6	0	0	logfile
✔	6WYK	21967	2023-04-19	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.86	0.0	0.05	16.17	0.00	2.173	13.51	0.31	2.9	97.1	0.0	1.58	0.85	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	7FJP	31626	2023-04-20	2021-08-04	3.0	3.19	—	3.2	0.006	1.14	1.0	0.07	10.95	0.01	1.270	7.70	0.80	7.0	92.2	0.7	-4.60	0.71	0.81	3.22	3.1	0.003	0.77	0.0	0.04	14.50	0.00	2.086	7.15	3.62	5.9	93.9	0.2	-0.38	0.65	0.69	0.83	2.56	7239	983	1	0	4	0	0	logfile

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