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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SB3 | 10134 | 2023-08-18 | 2019-07-18 | 3.5 | 3.63 | 3.51 | 3.7 | 0.002 | 0.56 | 0.0 | 0.04 | 12.98 | 0.00 | 2.104 | 13.24 | 0.00 | 4.9 | 95.1 | 0.0 | -2.84 | 0.68 | 0.71 | 1.27 | 3.6 | 0.005 | 0.68 | 0.0 | 0.05 | 15.97 | 0.00 | 2.036 | 17.49 | 0.63 | 7.7 | 92.3 | 0.0 | -1.43 | 1.22 | 0.71 | 0.76 | 0.99 | 75712 | 9664 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 7So9 | 25263 | 2023-08-23 | 2021-10-29 | 2.4 | 2.43 | 2.40 | 2.4 | 0.010 | 1.19 | 0.0 | 0.07 | 10.79 | 0.01 | 2.154 | 0.79 | 0.17 | 1.5 | 98.5 | 0.0 | 0.67 | 0.74 | 0.78 | 4.76 | 2.4 | 0.003 | 0.60 | 0.0 | 0.05 | 14.88 | 0.00 | 2.138 | 4.79 | 1.89 | 2.2 | 97.8 | 0.0 | 1.03 | 1.01 | 0.75 | 0.79 | 4.76 | 34470 | 4434 | 24 | 0 | 51 | 354 | 0 | logfile |
✔ | 6GYB | 0089 | 2023-08-11 | 2018-06-28 | 3.28 | 3.42 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.06 | 9.51 | 0.01 | 2.304 | 4.03 | 0.22 | 6.6 | 93.4 | 0.0 | -4.49 | 0.81 | 0.87 | 4.60 | 3.4 | 0.005 | 0.65 | 0.0 | 0.05 | 14.20 | 0.00 | 2.142 | 7.18 | 0.40 | 6.3 | 93.7 | 0.0 | -1.08 | 0.55 | 0.81 | 0.89 | 3.74 | 59318 | 7546 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S8H | 10122 | 2023-08-10 | 2019-07-10 | 3.7 | 3.89 | — | 3.8 | 0.011 | 1.65 | 0.0 | 0.16 | 16.87 | 0.01 | 2.300 | 5.75 | 0.12 | 9.9 | 89.8 | 0.2 | -6.48 | 0.67 | 0.83 | 0.98 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 18.05 | 0.00 | 2.095 | 10.37 | 0.62 | 7.4 | 92.5 | 0.1 | -2.00 | 0.64 | 0.67 | 0.83 | 1.25 | 7818 | 959 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 7TBZ | 25802 | 2023-08-13 | 2021-12-22 | 4.3 | 4.56 | 4.01 | 4.0 | 0.002 | 0.56 | 0.0 | 0.04 | 12.08 | 0.00 | 2.207 | 6.66 | 0.00 | 3.8 | 96.2 | 0.1 | -2.61 | 0.70 | 0.77 | — | 4.0 | 0.003 | 0.68 | 0.0 | 0.04 | 12.09 | 0.00 | 2.162 | 10.10 | 0.00 | 6.3 | 93.7 | 0.0 | 0.15 | 2.66 | 0.72 | 0.82 | — | 13275 | 1788 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 7WEF | 32449 | 2023-08-09 | 2021-12-23 | 3.8 | 3.60 | — | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 12.72 | 0.00 | 2.239 | 8.92 | 0.00 | 7.5 | 92.5 | 0.0 | -1.27 | 0.53 | 0.76 | 2.61 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 14.51 | 0.00 | 2.184 | 7.54 | 0.56 | 5.4 | 94.6 | 0.0 | -1.12 | 0.37 | 0.55 | 0.76 | 2.05 | 3328 | 432 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V3B | 21032 | 2023-08-24 | 2019-11-25 | 2.91 | 3.09 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 14.38 | 0.01 | 1.895 | 5.92 | 0.05 | 2.9 | 97.1 | 0.1 | -1.21 | 0.83 | 0.83 | 2.56 | 3.0 | 0.008 | 0.78 | 0.0 | 0.05 | 16.16 | 0.01 | 1.664 | 7.19 | 3.52 | 5.3 | 94.6 | 0.1 | -0.34 | 1.58 | 0.86 | 0.89 | 2.58 | 140290 | 5457 | 76 | 4535 | 95 | 398 | 0 | logfile |
✔ | 7W99 | 32362 | 2023-08-20 | 2021-12-09 | 3.4 | 3.65 | — | 3.6 | 0.004 | 0.59 | 0.0 | 0.04 | 12.55 | 0.00 | 2.076 | 1.67 | 0.12 | 3.1 | 96.9 | 0.0 | -3.42 | 0.65 | 0.69 | 1.63 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 16.16 | 0.00 | 2.105 | 10.74 | 0.39 | 3.4 | 96.6 | 0.0 | -0.49 | 1.03 | 0.68 | 0.74 | 1.58 | 29737 | 3777 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U2K | 20621 | 2023-08-09 | 2019-08-20 | 2.93 | 3.31 | 3.29 | 3.3 | 0.010 | 0.99 | 0.0 | 0.06 | 10.06 | 0.01 | 2.354 | 3.34 | 0.19 | 9.7 | 90.3 | 0.0 | -4.70 | 0.70 | 0.83 | 4.65 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 15.37 | 0.00 | 2.239 | 6.78 | 2.51 | 7.7 | 92.3 | 0.0 | -1.98 | 1.20 | 0.65 | 0.81 | 3.04 | 4719 | 604 | 3 | 0 | 4 | 0 | 0 | logfile |
✔ | 7W32 | 32270 | 2023-08-14 | 2021-11-24 | 2.9 | 2.95 | — | 2.9 | 0.007 | 0.77 | 0.0 | 0.04 | 17.73 | 0.01 | 2.200 | 8.16 | 1.48 | 3.6 | 96.3 | 0.1 | 1.09 | 0.78 | 0.87 | 2.94 | 2.9 | 0.005 | 0.63 | 0.0 | 0.04 | 17.36 | 0.00 | 2.076 | 8.12 | 2.34 | 4.0 | 95.9 | 0.0 | 0.91 | 0.30 | 0.79 | 0.88 | 3.11 | 66660 | 8174 | 65 | 0 | 35 | 0 | 0 | logfile |
✔ | 6RQH | 4982 | 2023-08-27 | 2019-05-15 | 3.7 | 3.79 | — | 3.8 | 0.008 | 1.07 | 0.0 | 0.06 | 13.10 | 0.01 | 2.036 | 8.11 | 0.58 | 10.5 | 89.3 | 0.1 | -5.22 | 0.67 | 0.68 | 1.59 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 16.44 | 0.00 | 2.077 | 11.41 | 0.20 | 6.6 | 93.4 | 0.0 | -2.00 | 2.25 | 0.68 | 0.66 | 1.14 | 50851 | 6151 | 20 | 78 | 0 | 0 | 0 | logfile |
✔ | 6GB2 | 4370 | 2023-08-11 | 2018-04-13 | 3.2 | 3.20 | 3.10 | 3.1 | 0.007 | 1.14 | 0.0 | 0.05 | 17.78 | 0.01 | 1.865 | 9.38 | 10.13 | 4.0 | 95.9 | 0.2 | -2.82 | 0.85 | 0.89 | 2.34 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 17.92 | 0.01 | 1.852 | 11.22 | 0.38 | 3.7 | 96.2 | 0.1 | 0.45 | 0.76 | 0.84 | 0.89 | 2.23 | 111109 | 9312 | 78 | 1687 | 225 | 2 | 0 | logfile |
✔ | 7DMP | 30766 | 2023-08-12 | 2020-12-05 | 3.2 | 2.58 | — | 3.3 | 0.003 | 0.76 | 1.0 | 0.05 | 14.92 | 0.01 | 1.020 | 10.12 | 1.61 | 7.4 | 92.6 | 0.0 | -4.33 | 0.72 | 0.69 | 2.30 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 17.00 | 0.00 | 2.018 | 17.63 | 0.84 | 8.2 | 91.8 | 0.0 | -2.51 | 0.74 | 0.76 | 0.76 | 2.30 | 12308 | 1528 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W0Y | 32249 | 2023-08-15 | 2021-11-18 | 3.4 | 3.42 | — | 3.4 | 0.008 | 0.81 | 0.0 | 0.04 | 17.98 | 0.01 | 2.148 | 11.79 | 0.22 | 3.4 | 96.5 | 0.1 | 1.17 | 0.78 | 0.85 | 2.73 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 17.04 | 0.00 | 2.142 | 8.54 | 0.24 | 3.3 | 96.6 | 0.0 | 1.18 | 0.35 | 0.78 | 0.86 | 2.57 | 68093 | 8269 | 68 | 0 | 44 | 0 | 0 | logfile |
✔ | 8G3L | 29701 | 2023-08-13 | 2023-02-08 | 3.5 | 3.60 | 3.55 | 3.6 | 0.006 | 0.81 | 0.0 | 0.05 | 15.95 | 0.01 | 2.191 | 7.84 | 0.00 | 5.5 | 94.5 | 0.0 | -0.13 | 0.66 | 0.73 | 2.04 | 3.6 | 0.002 | 0.59 | 0.0 | 0.04 | 16.88 | 0.00 | 2.198 | 6.41 | 0.26 | 4.7 | 95.3 | 0.0 | 0.38 | 0.41 | 0.66 | 0.72 | 1.56 | 14442 | 1791 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 7V2K | 31646 | 2023-08-14 | 2021-08-09 | 2.7 | 2.78 | — | 2.8 | 0.007 | 0.90 | 9.0 | 0.05 | 15.50 | 0.01 | 1.354 | 13.50 | 0.40 | 3.7 | 96.2 | 0.1 | 1.05 | 0.77 | 0.83 | 3.21 | 2.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.96 | 0.00 | 2.054 | 8.41 | 1.70 | 3.9 | 96.0 | 0.1 | 0.99 | 0.43 | 0.79 | 0.86 | 3.01 | 66880 | 8174 | 67 | 0 | 38 | 0 | 0 | logfile |
✔ | 6HV8 | 0287 | 2023-08-11 | 2018-10-10 | 4.4 | 4.51 | — | 4.4 | 0.009 | 1.62 | 2.0 | 0.08 | 10.20 | 0.01 | 1.472 | 8.97 | 1.31 | 22.1 | 77.3 | 0.6 | -4.84 | 0.74 | 0.72 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.05 | 12.78 | 0.00 | 2.083 | 14.58 | 0.00 | 14.2 | 85.8 | 0.0 | -2.84 | 1.02 | 0.74 | 0.71 | — | 9206 | 1184 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7V31 | 31649 | 2023-08-15 | 2021-08-10 | 2.9 | 2.99 | — | 3.0 | 0.007 | 0.90 | 11.0 | 0.05 | 15.74 | 0.01 | 1.681 | 10.60 | 0.36 | 3.4 | 96.5 | 0.1 | 0.59 | 0.79 | 0.87 | 3.49 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 16.83 | 0.00 | 2.081 | 7.16 | 1.41 | 3.7 | 96.3 | 0.0 | 0.96 | 0.37 | 0.78 | 0.88 | 3.06 | 68204 | 8269 | 71 | 0 | 47 | 0 | 0 | logfile |
✔ | 7W2Y | 32267 | 2023-08-15 | 2021-11-24 | 2.7 | 2.80 | — | 2.8 | 0.008 | 0.80 | 1.0 | 0.04 | 17.91 | 0.01 | 2.196 | 6.93 | 1.05 | 3.1 | 96.8 | 0.1 | 0.97 | 0.79 | 0.89 | 3.92 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 17.31 | 0.00 | 2.143 | 6.53 | 1.76 | 3.1 | 96.9 | 0.1 | 1.35 | 1.10 | 0.78 | 0.88 | 3.69 | 68232 | 8270 | 67 | 0 | 46 | 0 | 0 | logfile |
✔ | 6J5T | 0680 | 2023-08-09 | 2019-01-12 | 3.4 | 3.94 | — | 3.0 | 0.011 | 1.21 | 0.0 | 0.07 | 12.81 | 0.02 | 2.233 | 7.03 | 0.59 | 11.3 | 88.4 | 0.3 | -4.25 | 0.83 | 0.67 | 0.05 | 3.0 | 0.006 | 1.05 | 0.0 | 0.05 | 15.84 | 0.01 | 2.050 | 24.51 | 0.76 | 11.3 | 88.5 | 0.2 | -1.87 | 1.35 | 0.91 | 0.85 | 1.27 | 53488 | 6640 | 25 | 0 | 15 | 0 | 0 | logfile |