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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VXo | 21446 | 2023-02-18 | 2020-02-22 | 3.5 | 3.81 | — | 3.8 | 0.012 | 1.40 | 0.0 | 0.05 | 24.43 | 0.00 | 2.125 | 14.64 | 21.57 | 12.2 | 87.4 | 0.4 | -3.90 | 0.63 | 0.83 | 0.88 | 3.8 | 0.004 | 0.78 | 0.0 | 0.05 | 18.44 | 0.00 | 2.129 | 12.14 | 0.61 | 10.5 | 89.5 | 0.0 | -0.50 | 0.68 | 0.61 | 0.81 | 1.08 | 8048 | 904 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 7TiB | 25616 | 2023-02-23 | 2022-01-13 | 3.4 | 3.28 | 3.41 | 3.3 | 0.002 | 0.53 | 0.0 | 0.04 | 16.66 | 0.00 | 2.099 | 8.49 | 1.09 | 2.2 | 97.8 | 0.0 | -1.97 | 0.64 | 0.79 | 1.73 | 3.2 | 0.005 | 0.67 | 0.0 | 0.04 | 18.41 | 0.00 | 1.853 | 11.32 | 0.61 | 3.5 | 96.5 | 0.0 | 0.27 | 0.53 | 0.65 | 0.83 | 2.03 | 21377 | 2581 | 15 | 42 | 9 | 0 | 0 | logfile |
✔ | 7QBC | 13886 | 2023-02-17 | 2021-11-18 | 3.53 | 3.78 | 3.55 | 3.8 | 0.008 | 0.96 | 0.0 | 0.05 | 14.25 | 0.01 | 2.055 | 3.75 | 0.43 | 4.9 | 95.1 | 0.0 | -2.40 | 0.56 | 0.74 | 2.58 | 3.8 | 0.004 | 0.76 | 0.0 | 0.04 | 16.11 | 0.00 | 2.099 | 13.12 | 1.06 | 5.4 | 94.6 | 0.0 | 1.45 | 0.64 | 0.61 | 0.79 | 1.01 | 5054 | 622 | 6 | 0 | 16 | 0 | 0 | logfile |
✔ | 7WJU | 32548 | 2023-02-18 | 2022-01-07 | 2.69 | 2.82 | — | 2.8 | 0.007 | 0.99 | 0.0 | 0.07 | 17.67 | 0.01 | 2.325 | 3.53 | 0.00 | 5.3 | 94.5 | 0.2 | -2.47 | 0.72 | 0.81 | 3.88 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 18.39 | 0.00 | 2.264 | 6.52 | 1.50 | 4.3 | 95.7 | 0.0 | 0.70 | 1.16 | 0.70 | 0.83 | 3.31 | 8322 | 607 | 5 | 158 | 0 | 0 | 0 | logfile |
✔ | 6FEQ | 4246 | 2023-02-20 | 2018-01-03 | 3.6 | 3.83 | — | 3.7 | 0.011 | 1.04 | 0.0 | 0.06 | 10.44 | 0.01 | 2.271 | 4.71 | 0.15 | 5.8 | 94.2 | 0.0 | -4.17 | 0.66 | 0.83 | 3.20 | 3.7 | 0.002 | 0.66 | 0.0 | 0.04 | 13.21 | 0.00 | 2.164 | 9.63 | 0.15 | 4.7 | 95.3 | 0.0 | 0.39 | 1.31 | 0.67 | 0.83 | 2.71 | 12397 | 1582 | 8 | 0 | 3 | 0 | 0 | logfile |
✔ | 7Yi9 | 33854 | 2023-02-17 | 2022-07-15 | 2.6 | 2.91 | 2.69 | 2.9 | 0.004 | 0.65 | 0.0 | 0.40 | 14.29 | 0.00 | 2.115 | 9.72 | 0.00 | 5.0 | 95.0 | 0.0 | -0.81 | 0.63 | 0.75 | 3.34 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 17.36 | 0.00 | 2.126 | 10.96 | 1.73 | 4.2 | 95.8 | 0.0 | -0.57 | 1.28 | 0.65 | 0.78 | 3.39 | 5226 | 634 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XoU | 22280 | 2023-02-18 | 2020-07-07 | 4.0 | 4.67 | 4.02 | 4.1 | 0.005 | 1.06 | 0.0 | 0.06 | 13.63 | 0.01 | 2.261 | 4.13 | 0.23 | 2.8 | 97.2 | 0.0 | -1.51 | 0.89 | 0.75 | — | 4.1 | 0.003 | 0.85 | 0.0 | 0.04 | 14.92 | 0.00 | 2.157 | 13.83 | 0.70 | 2.6 | 97.4 | 0.0 | 1.32 | 1.79 | 0.91 | 0.85 | — | 7697 | 965 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D7C | 30604 | 2023-02-25 | 2020-10-03 | 3.6 | 3.97 | — | 3.6 | 0.007 | 0.79 | 0.0 | 0.05 | 16.22 | 0.01 | 1.967 | 16.93 | 0.29 | 11.7 | 88.2 | 0.1 | -4.31 | 0.85 | 0.84 | 1.83 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 17.54 | 0.00 | 1.996 | 12.34 | 0.22 | 6.4 | 93.5 | 0.0 | -0.93 | 1.42 | 0.84 | 0.83 | 1.41 | 26249 | 3225 | 8 | 48 | 3 | 0 | 0 | logfile |
✔ | 7KJK | 22896 | 2023-02-22 | 2020-10-26 | 3.6 | 3.53 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 14.47 | 0.01 | 1.919 | 27.34 | 1.45 | 10.7 | 89.3 | 0.0 | -3.10 | 0.50 | 0.82 | 2.22 | 3.7 | 0.004 | 0.77 | 0.0 | 0.05 | 16.96 | 0.00 | 2.062 | 20.76 | 1.06 | 7.8 | 92.2 | 0.0 | -1.83 | 0.94 | 0.49 | 0.81 | 1.80 | 59088 | 7740 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q5Z | 13847 | 2023-02-19 | 2021-11-05 | 3.25 | 3.74 | — | 3.3 | 0.005 | 1.00 | 1.0 | 0.06 | 12.76 | 0.01 | 1.750 | 5.22 | 0.09 | 6.2 | 93.6 | 0.2 | -2.07 | 0.80 | 0.69 | 1.18 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 14.12 | 0.00 | 2.169 | 16.53 | 0.43 | 6.5 | 93.4 | 0.2 | -0.80 | 1.18 | 0.82 | 0.74 | 1.50 | 10489 | 1344 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R7U | 24305 | 2023-02-25 | 2021-06-25 | 4.3 | 4.05 | — | 3.8 | 0.005 | 1.09 | 0.0 | 0.06 | 15.34 | 0.01 | 2.278 | 7.09 | 0.04 | 8.8 | 91.2 | 0.0 | -3.72 | 0.78 | 0.72 | — | 3.8 | 0.003 | 0.75 | 0.0 | 0.05 | 14.74 | 0.01 | 2.137 | 20.79 | 0.07 | 8.2 | 91.7 | 0.0 | -1.23 | 0.89 | 0.79 | 0.73 | — | 25362 | 3240 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P6A | 13223 | 2023-02-17 | 2021-07-15 | 1.9 | 1.91 | 1.88 | 1.9 | 0.004 | 0.72 | 0.0 | 0.06 | 12.30 | 0.01 | 2.247 | 3.33 | 0.00 | 3.8 | 96.2 | 0.0 | -3.07 | 0.51 | 0.86 | 7.13 | 1.9 | 0.003 | 0.65 | 0.0 | 0.05 | 14.15 | 0.00 | 2.293 | 4.99 | 0.00 | 4.7 | 95.3 | 0.0 | -2.61 | 0.38 | 0.55 | 0.89 | 7.74 | 4166 | 540 | 10 | 0 | 0 | 76 | 0 | logfile |
✔ | 6K43 | 9913 | 2023-02-28 | 2019-05-23 | 3.7 | 4.12 | — | 4.0 | 0.007 | 0.72 | 0.0 | 0.04 | 15.85 | 0.00 | 1.266 | 17.54 | 0.12 | 6.9 | 93.1 | 0.0 | -2.02 | 0.75 | 0.82 | 1.49 | 4.1 | 0.004 | 0.72 | 0.0 | 0.03 | 18.20 | 0.00 | 2.172 | 5.80 | 0.36 | 3.5 | 96.5 | 0.0 | 4.18 | 0.82 | 0.76 | 0.81 | 1.59 | 31808 | 3840 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 7MDo | 23776 | 2023-02-25 | 2021-04-05 | 4.12 | 4.28 | — | 4.2 | 0.005 | 1.06 | 0.0 | 0.06 | 15.75 | 0.01 | 2.283 | 6.87 | 0.00 | 6.7 | 93.3 | 0.0 | -3.01 | 0.75 | 0.75 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.05 | 14.94 | 0.00 | 2.164 | 19.99 | 0.00 | 6.9 | 93.1 | 0.0 | -0.46 | 0.97 | 0.76 | 0.75 | — | 25098 | 3186 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6PWP | 20510 | 2023-02-21 | 2019-07-23 | 4.1 | 6.04 | 4.26 | 4.4 | 0.010 | 0.86 | 0.0 | 0.05 | 13.54 | 0.00 | 2.096 | 24.59 | 0.31 | 6.8 | 93.2 | 0.0 | -3.74 | 0.80 | 0.87 | — | 4.4 | 0.004 | 0.63 | 0.0 | 0.04 | 13.58 | 0.00 | 2.101 | 15.10 | 0.00 | 4.7 | 95.3 | 0.0 | 0.14 | 1.26 | 0.80 | 0.86 | — | 14903 | 1960 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WM2 | 32598 | 2023-02-21 | 2022-01-14 | 2.69 | 2.86 | — | 3.0 | 0.012 | 1.03 | 12.0 | 0.07 | 18.06 | 0.01 | 2.110 | 18.30 | 12.04 | 5.9 | 94.0 | 0.2 | -4.24 | 0.49 | 0.72 | 2.14 | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 17.81 | 0.00 | 2.118 | 8.32 | 3.87 | 2.6 | 97.4 | 0.0 | 0.32 | 0.75 | 0.59 | 0.82 | 2.14 | 15485 | 1878 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 7MDM | 23775 | 2023-02-28 | 2021-04-05 | 4.86 | 5.09 | — | 5.0 | 0.005 | 1.19 | 0.0 | 0.07 | 15.37 | 0.01 | 2.261 | 9.38 | 0.03 | 7.9 | 92.1 | 0.0 | -3.53 | 0.82 | 0.77 | — | 4.9 | 0.004 | 0.87 | 0.0 | 0.05 | 14.45 | 0.01 | 2.097 | 32.97 | 0.00 | 8.9 | 91.1 | 0.0 | -2.05 | 2.41 | 0.84 | 0.79 | — | 31986 | 4051 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 7ARH | 11882 | 2023-02-19 | 2020-10-25 | 3.3 | 3.57 | — | 3.5 | 0.003 | 0.72 | 0.0 | 0.05 | 12.26 | 0.00 | 2.324 | 2.92 | 0.20 | 3.5 | 96.5 | 0.0 | -5.69 | 0.70 | 0.75 | 0.94 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 15.83 | 0.00 | 2.133 | 15.15 | 0.98 | 5.5 | 94.5 | 0.0 | -1.19 | 0.91 | 0.74 | 0.83 | 1.43 | 9649 | 1261 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DZE | 27795 | 2023-02-23 | 2022-08-07 | 2.99 | 3.47 | 3.03 | 3.4 | 0.008 | 0.83 | 0.0 | 0.05 | 15.76 | 0.01 | 2.289 | 4.10 | 0.64 | 7.0 | 92.7 | 0.2 | -0.16 | 0.70 | 0.79 | 2.13 | 3.4 | 0.003 | 0.55 | 0.0 | 0.04 | 16.47 | 0.00 | 2.206 | 5.50 | 2.78 | 8.6 | 91.2 | 0.2 | 0.39 | 1.15 | 0.69 | 0.82 | 2.55 | 19308 | 2478 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6WB0 | 21583 | 2023-02-18 | 2020-03-26 | 4.2 | 4.26 | — | 4.2 | 0.002 | 0.51 | 0.0 | 0.04 | 11.69 | 0.00 | 2.131 | 11.89 | 0.81 | 4.1 | 95.9 | 0.0 | -4.46 | 0.79 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8518 | 948 | 4 | 77 | 0 | 0 | 0 | logfile |