Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SB3	10134	2023-08-18	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	12.98	0.00	2.104	13.24	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.005	0.68	0.0	0.05	15.97	0.00	2.036	17.49	0.63	7.7	92.3	0.0	-1.43	1.22	0.71	0.76	0.99	75712	9664	32	0	32	0	0	logfile
✔	7So9	25263	2023-08-23	2021-10-29	2.4	2.43	2.40	2.4	0.010	1.19	0.0	0.07	10.79	0.01	2.154	0.79	0.17	1.5	98.5	0.0	0.67	0.74	0.78	4.76	2.4	0.003	0.60	0.0	0.05	14.88	0.00	2.138	4.79	1.89	2.2	97.8	0.0	1.03	1.01	0.75	0.79	4.76	34470	4434	24	0	51	354	0	logfile
✔	6GYB	0089	2023-08-11	2018-06-28	3.28	3.42	—	3.4	0.008	0.92	0.0	0.06	9.51	0.01	2.304	4.03	0.22	6.6	93.4	0.0	-4.49	0.81	0.87	4.60	3.4	0.005	0.65	0.0	0.05	14.20	0.00	2.142	7.18	0.40	6.3	93.7	0.0	-1.08	0.55	0.81	0.89	3.74	59318	7546	42	0	0	0	0	logfile
✔	6S8H	10122	2023-08-10	2019-07-10	3.7	3.89	—	3.8	0.011	1.65	0.0	0.16	16.87	0.01	2.300	5.75	0.12	9.9	89.8	0.2	-6.48	0.67	0.83	0.98	3.8	0.003	0.77	0.0	0.04	18.05	0.00	2.095	10.37	0.62	7.4	92.5	0.1	-2.00	0.64	0.67	0.83	1.25	7818	959	6	0	7	0	0	logfile
✔	7TBZ	25802	2023-08-13	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.56	0.0	0.04	12.08	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.68	0.0	0.04	12.09	0.00	2.162	10.10	0.00	6.3	93.7	0.0	0.15	2.66	0.72	0.82	—	13275	1788	4	0	10	0	0	logfile
✔	7WEF	32449	2023-08-09	2021-12-23	3.8	3.60	—	3.9	0.003	0.62	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.9	0.003	0.60	0.0	0.04	14.51	0.00	2.184	7.54	0.56	5.4	94.6	0.0	-1.12	0.37	0.55	0.76	2.05	3328	432	3	0	0	0	0	logfile
✔	6V3B	21032	2023-08-24	2019-11-25	2.91	3.09	—	3.0	0.002	0.51	0.0	0.03	14.38	0.01	1.895	5.92	0.05	2.9	97.1	0.1	-1.21	0.83	0.83	2.56	3.0	0.008	0.78	0.0	0.05	16.16	0.01	1.664	7.19	3.52	5.3	94.6	0.1	-0.34	1.58	0.86	0.89	2.58	140290	5457	76	4535	95	398	0	logfile
✔	7W99	32362	2023-08-20	2021-12-09	3.4	3.65	—	3.6	0.004	0.59	0.0	0.04	12.55	0.00	2.076	1.67	0.12	3.1	96.9	0.0	-3.42	0.65	0.69	1.63	3.6	0.003	0.66	0.0	0.04	16.16	0.00	2.105	10.74	0.39	3.4	96.6	0.0	-0.49	1.03	0.68	0.74	1.58	29737	3777	4	0	0	0	0	logfile
✔	6U2K	20621	2023-08-09	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.99	0.0	0.06	10.06	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.003	0.66	0.0	0.04	15.37	0.00	2.239	6.78	2.51	7.7	92.3	0.0	-1.98	1.20	0.65	0.81	3.04	4719	604	3	0	4	0	0	logfile
✔	7W32	32270	2023-08-14	2021-11-24	2.9	2.95	—	2.9	0.007	0.77	0.0	0.04	17.73	0.01	2.200	8.16	1.48	3.6	96.3	0.1	1.09	0.78	0.87	2.94	2.9	0.005	0.63	0.0	0.04	17.36	0.00	2.076	8.12	2.34	4.0	95.9	0.0	0.91	0.30	0.79	0.88	3.11	66660	8174	65	0	35	0	0	logfile
✔	6RQH	4982	2023-08-27	2019-05-15	3.7	3.79	—	3.8	0.008	1.07	0.0	0.06	13.10	0.01	2.036	8.11	0.58	10.5	89.3	0.1	-5.22	0.67	0.68	1.59	3.8	0.003	0.65	0.0	0.04	16.44	0.00	2.077	11.41	0.20	6.6	93.4	0.0	-2.00	2.25	0.68	0.66	1.14	50851	6151	20	78	0	0	0	logfile
✔	6GB2	4370	2023-08-11	2018-04-13	3.2	3.20	3.10	3.1	0.007	1.14	0.0	0.05	17.78	0.01	1.865	9.38	10.13	4.0	95.9	0.2	-2.82	0.85	0.89	2.34	3.1	0.004	0.68	0.0	0.04	17.92	0.01	1.852	11.22	0.38	3.7	96.2	0.1	0.45	0.76	0.84	0.89	2.23	111109	9312	78	1687	225	2	0	logfile
✔	7DMP	30766	2023-08-12	2020-12-05	3.2	2.58	—	3.3	0.003	0.76	1.0	0.05	14.92	0.01	1.020	10.12	1.61	7.4	92.6	0.0	-4.33	0.72	0.69	2.30	3.3	0.003	0.72	0.0	0.04	17.00	0.00	2.018	17.63	0.84	8.2	91.8	0.0	-2.51	0.74	0.76	0.76	2.30	12308	1528	6	0	0	0	0	logfile
✔	7W0Y	32249	2023-08-15	2021-11-18	3.4	3.42	—	3.4	0.008	0.81	0.0	0.04	17.98	0.01	2.148	11.79	0.22	3.4	96.5	0.1	1.17	0.78	0.85	2.73	3.4	0.002	0.54	0.0	0.04	17.04	0.00	2.142	8.54	0.24	3.3	96.6	0.0	1.18	0.35	0.78	0.86	2.57	68093	8269	68	0	44	0	0	logfile
✔	8G3L	29701	2023-08-13	2023-02-08	3.5	3.60	3.55	3.6	0.006	0.81	0.0	0.05	15.95	0.01	2.191	7.84	0.00	5.5	94.5	0.0	-0.13	0.66	0.73	2.04	3.6	0.002	0.59	0.0	0.04	16.88	0.00	2.198	6.41	0.26	4.7	95.3	0.0	0.38	0.41	0.66	0.72	1.56	14442	1791	7	0	4	0	0	logfile
✔	7V2K	31646	2023-08-14	2021-08-09	2.7	2.78	—	2.8	0.007	0.90	9.0	0.05	15.50	0.01	1.354	13.50	0.40	3.7	96.2	0.1	1.05	0.77	0.83	3.21	2.7	0.003	0.62	0.0	0.04	16.96	0.00	2.054	8.41	1.70	3.9	96.0	0.1	0.99	0.43	0.79	0.86	3.01	66880	8174	67	0	38	0	0	logfile
✔	6HV8	0287	2023-08-11	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.003	0.84	0.0	0.05	12.78	0.00	2.083	14.58	0.00	14.2	85.8	0.0	-2.84	1.02	0.74	0.71	—	9206	1184	2	0	2	0	0	logfile
✔	7V31	31649	2023-08-15	2021-08-10	2.9	2.99	—	3.0	0.007	0.90	11.0	0.05	15.74	0.01	1.681	10.60	0.36	3.4	96.5	0.1	0.59	0.79	0.87	3.49	3.0	0.003	0.57	0.0	0.04	16.83	0.00	2.081	7.16	1.41	3.7	96.3	0.0	0.96	0.37	0.78	0.88	3.06	68204	8269	71	0	47	0	0	logfile
✔	7W2Y	32267	2023-08-15	2021-11-24	2.7	2.80	—	2.8	0.008	0.80	1.0	0.04	17.91	0.01	2.196	6.93	1.05	3.1	96.8	0.1	0.97	0.79	0.89	3.92	2.8	0.003	0.56	0.0	0.04	17.31	0.00	2.143	6.53	1.76	3.1	96.9	0.1	1.35	1.10	0.78	0.88	3.69	68232	8270	67	0	46	0	0	logfile
✔	6J5T	0680	2023-08-09	2019-01-12	3.4	3.94	—	3.0	0.011	1.21	0.0	0.07	12.81	0.02	2.233	7.03	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	3.0	0.006	1.05	0.0	0.05	15.84	0.01	2.050	24.51	0.76	11.3	88.5	0.2	-1.87	1.35	0.91	0.85	1.27	53488	6640	25	0	15	0	0	logfile

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