Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VBY	31885	2023-04-21	2021-09-01	2.54	3.43	—	3.1	0.007	0.85	2.0	0.08	16.46	0.00	2.120	17.97	0.75	2.3	97.5	0.2	1.56	0.64	0.77	4.64	3.1	0.006	0.89	0.0	0.05	17.70	0.01	2.159	9.22	1.87	3.5	96.5	0.0	1.99	1.34	0.65	0.89	4.34	8207	951	19	0	23	0	0	logfile
✔	7LBF	23253	2023-04-23	2021-01-07	2.8	3.23	—	3.1	0.003	0.56	0.0	0.04	12.92	0.00	2.098	3.61	0.00	2.4	97.6	0.0	0.66	0.76	0.83	3.83	3.1	0.003	0.62	0.0	0.04	15.98	0.00	2.052	8.71	2.05	3.0	97.0	0.0	0.39	1.43	0.72	0.81	3.11	15656	1923	15	0	29	0	0	logfile
✔	8EYX	28723	2023-04-25	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	33.88	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.004	0.68	0.0	0.04	12.85	0.00	2.136	23.75	0.06	9.1	90.7	0.2	-1.42	1.18	0.89	0.83	—	14298	1773	6	0	0	0	0	logfile
✔	7MBY	23750	2023-04-20	2021-04-01	2.44	3.24	2.49	3.1	0.006	0.95	1.0	0.06	11.99	0.01	2.280	4.92	0.00	1.7	98.3	0.0	-1.45	0.58	0.68	2.19	3.1	0.003	0.77	0.0	0.04	15.48	0.00	2.144	15.56	1.67	2.9	97.1	0.0	0.56	1.04	0.58	0.70	1.45	6881	891	6	0	2	0	0	logfile
✔	6E1K	8956	2023-04-23	2018-07-10	3.3	3.68	3.47	3.7	0.019	1.76	1.0	0.08	13.49	0.01	2.047	10.32	1.50	11.4	88.3	0.3	-6.12	0.53	0.67	3.36	3.7	0.003	0.70	0.0	0.04	14.36	0.00	2.082	12.28	0.58	5.4	94.6	0.0	-1.90	0.76	0.56	0.64	1.59	11641	1450	10	0	21	2	0	logfile
✔	7KB5	22787	2023-04-21	2020-10-01	3.8	4.51	3.86	4.0	0.004	0.64	0.0	0.04	13.76	0.00	2.163	7.30	0.00	4.4	95.6	0.0	-1.47	0.65	0.84	1.16	4.0	0.005	0.70	0.0	0.04	15.11	0.00	2.152	10.28	0.29	4.0	96.0	0.0	1.97	0.54	0.65	0.85	1.30	9777	1252	6	0	0	0	0	logfile
✔	7VNQ	32045	2023-04-23	2021-10-11	2.96	3.80	—	3.5	0.010	1.02	0.0	0.06	15.91	0.01	2.207	12.52	6.90	5.7	93.9	0.4	-1.00	0.50	0.45	1.23	3.5	0.005	0.97	0.0	0.05	17.95	0.01	2.111	22.25	3.20	5.5	94.3	0.2	0.74	1.75	0.59	0.80	1.55	15507	1920	12	0	7	0	0	logfile
✔	7BC6	12140	2023-04-20	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.76	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.004	0.65	0.0	0.04	15.20	0.00	2.200	8.93	0.46	4.2	95.8	0.0	0.13	0.29	0.59	0.84	1.99	4178	549	2	0	0	0	0	logfile
✔	7STH	25428	2023-04-24	2021-11-13	3.5	4.00	—	3.7	0.003	0.56	0.0	0.04	13.68	0.00	2.200	9.57	0.38	7.5	92.4	0.2	-1.32	0.85	0.83	2.05	3.8	0.003	0.59	0.0	0.04	15.02	0.00	2.160	11.21	0.13	6.2	93.8	0.1	-1.13	0.39	0.85	0.82	2.24	14010	1736	4	0	0	0	0	logfile
✔	7Q12	13752	2023-04-25	2021-10-17	3.7	3.84	3.70	3.7	0.003	0.58	0.0	0.35	14.57	0.00	2.241	9.16	0.00	3.4	96.6	0.0	0.25	0.82	0.79	1.46	3.7	0.003	0.64	0.0	0.04	15.75	0.00	2.232	11.31	0.09	4.0	96.0	0.0	-0.29	1.16	0.81	0.79	1.54	20244	2488	12	0	4	0	0	logfile
✔	8G09	29650	2023-04-25	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.71	0.0	0.23	5.31	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.009	1.01	0.0	0.07	6.67	0.01	1.686	8.59	0.00	13.5	86.5	0.0	-1.37	0.75	0.82	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	7YoU	33987	2023-04-24	2022-08-02	3.41	3.21	3.36	3.3	0.008	1.00	0.0	0.06	10.41	0.01	2.288	5.17	0.34	6.9	93.1	0.0	-3.52	0.78	0.83	2.72	3.3	0.003	0.69	0.0	0.04	14.48	0.00	2.165	11.03	0.20	4.7	95.3	0.0	0.56	1.67	0.79	0.84	1.63	18266	2321	5	0	0	0	0	logfile
✔	6N51	0345	2023-04-23	2018-11-20	4.0	4.15	—	4.0	0.006	0.84	0.0	0.05	9.49	0.01	2.274	5.73	0.00	6.8	93.2	0.0	-3.65	0.71	0.81	—	4.0	0.003	0.73	0.0	0.04	13.60	0.00	2.116	13.70	0.41	4.8	95.2	0.0	-0.69	1.76	0.72	0.82	—	14087	1830	6	0	6	0	0	logfile
✔	6BCo	7083	2023-04-29	2017-10-20	2.88	2.96	—	3.0	0.007	0.98	0.0	0.05	9.77	0.01	2.286	3.76	0.37	5.8	94.2	0.0	-4.72	0.67	0.82	3.73	2.9	0.004	0.62	0.0	0.04	14.75	0.00	2.156	6.53	1.70	4.8	95.2	0.0	0.91	1.28	0.67	0.86	2.59	30432	3808	8	0	4	0	0	logfile
✔	6BCL	7082	2023-04-29	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	3.6	0.004	0.65	0.0	0.04	14.20	0.00	2.152	7.43	0.38	5.4	94.6	0.0	1.05	0.88	0.65	0.81	1.91	30474	3868	5	0	2	0	0	logfile
✔	6YJ6	10817	2023-04-28	2020-04-02	3.1	3.39	3.09	3.3	0.008	0.85	0.0	0.05	9.60	0.00	2.082	2.42	0.07	5.1	94.7	0.1	-4.59	0.73	0.77	4.44	3.3	0.002	0.55	0.0	0.04	13.47	0.00	2.028	5.87	0.07	4.9	95.1	0.0	-0.22	0.72	0.74	0.80	3.41	26878	1635	3	0	22	0	13353	logfile
✔	6XMS	22262	2023-04-20	2020-06-30	3.4	4.03	3.50	3.8	0.006	1.18	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.004	0.60	0.0	0.04	14.23	0.00	1.797	5.19	0.11	4.7	95.3	0.0	0.03	0.36	0.74	0.89	1.89	8389	1091	1	0	2	0	0	logfile
✔	7VNR	32046	2023-04-23	2021-10-11	2.8	3.48	—	3.3	0.011	1.01	2.0	0.07	16.15	0.01	2.217	11.25	5.60	6.4	93.4	0.2	-1.01	0.50	0.53	2.33	3.2	0.004	1.04	0.0	0.04	17.65	0.00	2.132	17.38	2.49	5.8	94.1	0.1	0.89	2.44	0.56	0.81	1.66	15343	1896	12	0	7	0	0	logfile
✔	6BGJ	7096	2023-04-20	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.55	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.90	0.0	0.05	14.15	0.00	2.083	19.86	0.14	13.1	86.6	0.3	-1.19	1.40	0.49	0.60	1.38	7418	980	4	0	2	0	0	logfile
✘	6XEV	22154	2023-04-21	2020-06-14	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10545	1312	8	0	25	0	0	logfile

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