Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J99	9783	2023-04-25	2019-01-22	4.1	4.24	—	4.2	0.008	0.98	1.0	0.05	26.78	0.01	2.204	7.71	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.004	0.77	0.0	0.04	27.36	0.01	2.114	19.04	0.00	6.3	93.7	0.0	-0.75	2.23	0.78	0.78	—	15266	1164	12	289	0	0	0	logfile
✔	7UM0	24763	2023-04-26	2022-04-05	3.8	4.24	3.93	4.1	0.005	0.51	0.0	0.04	14.42	0.00	2.224	7.24	0.12	2.8	97.2	0.0	-0.49	0.84	0.84	1.50	4.0	0.002	0.50	0.0	0.04	15.24	0.00	2.202	6.60	0.24	2.8	97.2	0.0	-0.22	0.36	0.84	0.84	1.64	21760	2647	7	1	3	0	0	logfile
✔	6ZKD	11245	2023-04-24	2020-06-30	2.7	2.83	—	2.7	0.008	1.02	0.0	1.03	11.89	0.01	2.196	5.23	0.06	3.4	96.6	0.0	-2.68	0.77	0.87	4.54	2.7	0.009	1.59	0.0	0.31	15.81	0.00	1.476	10.68	1.60	3.1	96.9	0.0	0.70	1.61	0.78	0.89	3.76	67450	8160	71	0	46	0	0	logfile
✔	6iY3	9749	2023-04-24	2018-12-12	3.67	3.77	—	3.7	0.009	1.08	0.0	0.06	25.87	0.01	2.260	5.55	0.42	8.2	91.5	0.2	-3.98	0.77	0.80	2.08	3.7	0.004	0.67	0.0	0.04	25.90	0.00	2.154	12.55	0.34	5.6	94.4	0.0	0.46	0.79	0.78	0.80	1.20	17073	1365	11	294	1	0	0	logfile
✘	7XT8	33442	2023-04-24	2022-05-16	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16812	1055	5	0	8	0	8287	logfile
✔	8A03	15046	2023-04-20	2022-05-26	3.2	3.30	3.21	3.3	0.002	0.44	0.0	0.04	14.18	0.00	2.399	3.41	0.00	2.4	97.6	0.0	0.63	0.51	0.84	2.31	3.3	0.002	0.50	0.0	0.05	16.53	0.00	2.187	4.93	0.32	3.0	97.0	0.0	-0.16	0.40	0.50	0.86	2.60	5511	717	3	0	0	0	0	logfile
✘	7XTA	33444	2023-04-24	2022-05-16	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17478	1115	5	0	1	0	8707	logfile
✔	5YUD	6845	2023-04-21	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.31	0.01	1.301	55.14	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.003	0.90	0.0	0.05	13.44	0.01	2.044	21.69	0.00	11.7	87.8	0.5	-2.72	1.21	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✘	6PQX	20455	2023-04-21	2019-07-10	4.6	4.84	—	4.7	0.006	0.99	0.0	0.06	23.23	0.01	2.222	15.96	2.35	5.2	94.1	0.6	-3.41	0.78	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10116	960	10	120	4	0	0	logfile
✔	7AXZ	11933	2023-04-20	2020-11-10	3.2	3.26	—	3.5	0.009	0.87	0.0	0.05	14.88	0.01	1.911	11.53	0.00	10.2	89.8	0.0	-2.73	0.75	0.78	2.55	3.5	0.003	0.64	0.0	0.04	16.65	0.00	2.192	10.32	0.22	4.0	96.0	0.0	-0.54	1.19	0.75	0.79	1.97	8225	1023	2	0	0	0	0	logfile
✔	6KWX	0780	2023-04-23	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.17	12.86	0.01	1.627	13.84	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	4.0	0.004	0.88	0.0	0.05	16.99	0.00	2.091	16.78	0.88	7.3	92.7	0.0	-0.68	1.12	0.69	0.80	0.78	14227	1751	1	0	2	0	0	logfile
✔	4UiS	2974	2023-04-22	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.80	0.0	0.04	11.88	0.00	2.133	16.76	0.00	9.9	88.9	1.2	-1.58	1.65	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	6L47	0831	2023-04-20	2019-10-16	3.5	4.12	—	4.0	0.005	0.82	0.0	0.04	14.83	0.01	2.266	14.93	3.34	10.7	89.3	0.0	-3.09	0.59	0.77	1.57	4.0	0.004	0.81	0.0	0.04	16.12	0.01	2.161	14.93	0.14	9.1	90.9	0.0	-0.49	3.25	0.57	0.75	1.42	7000	832	4	0	4	0	0	logfile
✔	6ZYE	11560	2023-04-22	2020-07-31	4.1	3.36	4.03	4.0	0.016	1.05	0.0	0.06	13.05	0.01	2.241	17.62	0.00	4.9	95.1	0.0	-3.23	0.69	0.77	—	4.0	0.004	0.68	0.0	0.04	13.67	0.00	2.253	12.09	0.00	2.0	98.0	0.0	0.17	1.80	0.69	0.79	—	11592	1302	7	0	252	0	0	logfile
✘	7Z4Z	14511	2023-04-20	2022-03-06	4.0	3.29	3.87	3.9	0.003	0.75	1.0	0.05	14.17	0.01	2.305	11.39	0.00	2.1	97.3	0.6	-4.82	0.61	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4817	673	4	0	0	0	0	logfile
✔	7DV5	30870	2023-04-21	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.002	0.66	0.0	0.04	16.09	0.00	2.213	9.45	0.30	6.7	93.3	0.0	-3.47	1.63	0.63	0.78	0.87	9319	1189	1	0	2	0	0	logfile
✔	6LTo	0976	2023-04-24	2020-01-23	3.1	3.36	2.98	3.4	0.007	1.00	0.0	0.05	14.55	0.01	2.318	2.17	0.00	7.6	92.4	0.0	-4.14	0.67	0.81	2.32	3.5	0.003	0.66	0.0	0.04	16.10	0.00	2.174	4.74	0.46	7.4	92.6	0.0	0.43	1.59	0.65	0.80	2.14	17255	2156	7	0	0	0	0	logfile
✔	3iZK	5247	2023-04-21	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.81	0.00	2.233	21.48	0.00	2.7	97.3	0.0	-0.42	1.96	0.75	0.55	—	58448	7856	16	0	0	0	0	logfile
✘	6RKD	4907	2023-04-27	2019-04-30	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25290	3234	24	0	90	0	0	logfile
✔	6RVY	10018	2023-04-21	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.87	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.003	0.74	0.0	0.04	13.23	0.00	2.369	10.92	0.00	5.0	95.0	0.0	-0.04	0.72	0.64	0.80	—	9627	1290	3	0	0	0	0	logfile

• ← previous
• Page 6 of 372
• next →