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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5ND1 | 3619 | 2023-12-10 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.15 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5NJ3 | 3654 | 2023-12-09 | 2017-03-28 | 3.78 | 3.89 | — | 3.8 | 0.011 | 1.16 | 0.0 | 0.06 | 10.68 | 0.01 | 2.183 | 8.79 | 0.68 | 6.0 | 93.9 | 0.1 | -3.80 | 0.72 | 0.79 | 2.92 | 3.8 | 0.003 | 0.71 | 0.0 | 0.04 | 13.71 | 0.00 | 2.127 | 10.73 | 0.34 | 4.5 | 95.4 | 0.1 | 0.60 | 1.26 | 0.72 | 0.78 | 2.18 | 12662 | 1958 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5NJG | 3654 | 2023-12-08 | 2017-03-28 | 3.78 | 3.88 | — | 3.8 | 0.014 | 1.31 | 0.0 | 0.07 | 11.64 | 0.01 | 2.183 | 8.78 | 0.68 | 6.9 | 92.9 | 0.2 | -4.16 | 0.68 | 0.82 | 2.92 | 3.8 | 0.003 | 0.77 | 0.0 | 0.04 | 15.30 | 0.00 | 2.139 | 12.70 | 0.46 | 5.9 | 94.1 | 0.0 | 0.37 | 2.00 | 0.65 | 0.81 | 2.12 | 8038 | 1020 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5o3L | 3741 | 2023-12-09 | 2017-05-24 | 3.4 | 3.71 | 3.34 | 3.7 | 0.012 | 1.03 | 0.0 | 0.06 | 8.97 | 0.01 | 2.111 | 9.60 | 0.00 | 22.4 | 77.6 | 0.0 | -6.67 | 0.60 | 0.69 | 2.44 | 3.6 | 0.004 | 0.77 | 0.0 | 0.05 | 15.40 | 0.01 | 1.909 | 15.32 | 0.62 | 13.2 | 86.8 | 0.0 | -5.24 | 2.68 | 0.57 | 0.75 | 2.41 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 5o3T | 3743 | 2023-12-09 | 2017-05-24 | 3.4 | 3.55 | 3.25 | 4.0 | 0.007 | 0.92 | 0.0 | 0.06 | 10.15 | 0.01 | 2.301 | 14.44 | 1.56 | 14.1 | 85.9 | 0.0 | -6.47 | 0.53 | 0.63 | 2.13 | 3.5 | 0.004 | 0.69 | 0.0 | 0.05 | 13.22 | 0.00 | 2.033 | 12.76 | 0.78 | 15.5 | 84.5 | 0.0 | -5.17 | 1.55 | 0.50 | 0.71 | 2.90 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✔ | 5oH0 | 3809 | 2023-12-08 | 2017-07-13 | 4.2 | 4.36 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.05 | 8.94 | 0.00 | 2.295 | 3.32 | 0.00 | 1.9 | 98.1 | 0.0 | -3.74 | 0.64 | 0.84 | — | 4.2 | 0.004 | 0.59 | 0.0 | 0.04 | 10.80 | 0.00 | 2.200 | 6.03 | 0.00 | 4.8 | 95.2 | 0.0 | -2.26 | 0.63 | 0.64 | 0.86 | — | 6588 | 942 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2023-12-08 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ooC | 3836 | 2023-12-10 | 2017-08-07 | 3.6 | 3.68 | 3.40 | 3.7 | 0.049 | 3.11 | 0.0 | 0.22 | 17.81 | 0.02 | 2.050 | 8.69 | 0.00 | 4.4 | 92.9 | 2.7 | -1.43 | 0.66 | 0.83 | 2.39 | 3.6 | 0.004 | 1.57 | 0.0 | 0.05 | 19.81 | 0.00 | 2.035 | 15.86 | 0.32 | 4.1 | 95.1 | 0.8 | -0.21 | 1.39 | 0.68 | 0.84 | 1.68 | 14885 | 1855 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 5ooD | 3837 | 2023-12-10 | 2017-08-07 | 3.7 | 3.73 | 3.79 | 3.7 | 0.050 | 3.12 | 0.0 | 0.22 | 18.58 | 0.02 | 1.995 | 7.57 | 0.00 | 5.5 | 92.0 | 2.5 | -1.71 | 0.63 | 0.81 | 2.02 | 3.7 | 0.003 | 1.57 | 0.0 | 0.04 | 19.43 | 0.00 | 2.008 | 18.29 | 0.38 | 4.9 | 94.9 | 0.2 | 0.35 | 1.43 | 0.62 | 0.82 | 1.86 | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 5oQJ | 3846 | 2023-12-09 | 2017-08-11 | 4.7 | 4.68 | — | 4.2 | 0.007 | 0.54 | 0.0 | 0.04 | 12.58 | 0.00 | 1.336 | 7.82 | 0.30 | 6.5 | 92.3 | 1.2 | -3.41 | 0.70 | 0.58 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.50 | 0.00 | 2.013 | 13.98 | 0.02 | 5.3 | 94.5 | 0.2 | -0.20 | 1.79 | 0.84 | 0.81 | — | 62931 | 7649 | 43 | 148 | 557 | 0 | 0 | logfile |
✔ | 5oYB | 3860 | 2023-12-09 | 2017-09-08 | 3.75 | 3.87 | 3.90 | 3.8 | 0.007 | 1.18 | 8.0 | 0.10 | 12.85 | 0.01 | 1.771 | 8.87 | 3.12 | 7.6 | 92.4 | 0.0 | -3.98 | 0.65 | 0.84 | 2.44 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 15.47 | 0.00 | 2.160 | 9.67 | 0.47 | 5.3 | 94.7 | 0.0 | 0.72 | 1.73 | 0.66 | 0.82 | 1.61 | 11770 | 1436 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 5oYG | 3861 | 2023-12-09 | 2017-09-08 | 4.06 | 4.29 | 4.02 | 4.1 | 0.007 | 1.27 | 10.0 | 0.10 | 12.53 | 0.01 | 2.282 | 5.95 | 1.98 | 6.9 | 93.1 | 0.0 | -3.35 | 0.68 | 0.83 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 12.60 | 0.00 | 2.130 | 11.47 | 0.00 | 6.0 | 94.0 | 0.0 | 0.56 | 0.84 | 0.68 | 0.82 | — | 11596 | 1418 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5SY1 | 8315 | 2023-12-09 | 2016-08-10 | 3.9 | 3.66 | 3.96 | 3.8 | 0.008 | 1.02 | 0.0 | 0.05 | 10.05 | 0.01 | 1.524 | 5.60 | 0.08 | 7.1 | 92.7 | 0.1 | -5.23 | 0.51 | 0.62 | 1.65 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 15.28 | 0.00 | 2.157 | 9.68 | 0.16 | 5.2 | 94.8 | 0.0 | 0.17 | 0.93 | 0.62 | 0.78 | 0.97 | 11462 | 1458 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 5TC1 | 8397 | 2023-12-10 | 2016-09-13 | 3.6 | 3.60 | — | 3.6 | 0.006 | 0.87 | 0.0 | 0.08 | 21.29 | 0.01 | 1.126 | 33.79 | 0.27 | 3.3 | 96.7 | 0.0 | -3.80 | 0.19 | 0.77 | 4.30 | 3.6 | 0.004 | 0.58 | 0.0 | 0.04 | 20.11 | 0.00 | 2.135 | 7.12 | 0.54 | 3.8 | 96.2 | 0.0 | -0.25 | 0.70 | 0.21 | 0.84 | 2.98 | 15393 | 1352 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 5TFY | 8405 | 2023-12-09 | 2016-09-27 | 3.4 | 4.55 | — | 4.1 | 0.007 | 1.91 | 124.0 | 0.09 | 13.18 | 0.00 | 1.377 | 21.22 | 3.79 | 4.9 | 95.1 | 0.0 | -2.21 | 0.47 | 0.74 | 3.32 | 4.1 | 0.003 | 0.71 | 0.0 | 0.05 | 16.29 | 0.00 | 1.820 | 27.32 | 0.61 | 3.0 | 97.0 | 0.0 | -0.57 | 1.83 | 0.44 | 0.70 | 2.21 | 65182 | 4264 | 26 | 0 | 0 | 0 | 33046 | logfile |
✔ | 5TJ5 | 8409 | 2023-12-10 | 2016-10-03 | 3.9 | 4.19 | — | 4.1 | 0.010 | 1.29 | 0.0 | 0.05 | 9.13 | 0.01 | 1.040 | 27.77 | 0.12 | 14.4 | 85.2 | 0.4 | -6.37 | 0.62 | 0.69 | 1.87 | 4.1 | 0.004 | 0.89 | 0.0 | 0.04 | 12.82 | 0.00 | 2.018 | 15.16 | 1.10 | 6.4 | 93.3 | 0.2 | 0.39 | 1.76 | 0.63 | 0.74 | 1.06 | 14976 | 2102 | 14 | 0 | 365 | 0 | 0 | logfile |
✔ | 5TQQ | 8435 | 2023-12-09 | 2016-10-24 | 3.76 | 2.84 | — | 3.8 | 0.008 | 1.52 | 32.0 | 0.09 | 12.22 | 0.01 | 2.136 | 6.30 | 0.89 | 4.7 | 95.2 | 0.1 | -0.21 | 0.64 | 0.72 | 1.71 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.63 | 0.00 | 2.137 | 13.21 | 0.30 | 2.5 | 97.5 | 0.0 | 1.58 | 1.52 | 0.69 | 0.83 | 1.42 | 12574 | 1642 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TR1 | 8454 | 2023-12-09 | 2016-10-25 | 3.95 | 2.78 | — | 3.8 | 0.008 | 1.54 | 44.0 | 0.09 | 12.78 | 0.01 | 2.107 | 5.25 | 2.23 | 4.6 | 95.2 | 0.2 | -0.26 | 0.65 | 0.69 | 1.48 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 14.65 | 0.00 | 2.164 | 12.24 | 0.30 | 3.0 | 97.0 | 0.0 | 1.36 | 2.74 | 0.68 | 0.79 | 1.65 | 12678 | 1648 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 5TTP | 8467 | 2023-12-07 | 2016-11-04 | 4.8 | 4.88 | — | 4.5 | 0.006 | 1.36 | 0.0 | 0.06 | 11.70 | 0.01 | 2.038 | 24.92 | 0.00 | 14.1 | 85.2 | 0.7 | -5.87 | 0.61 | 0.60 | — | 4.6 | 0.002 | 0.77 | 0.0 | 0.04 | 5.16 | 0.00 | 2.264 | 6.32 | 0.00 | 13.8 | 85.9 | 0.4 | 0.24 | 1.81 | 0.66 | 0.69 | — | 5616 | 1138 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5TV4 | 8469 | 2023-12-08 | 2016-11-08 | 4.2 | 4.13 | — | 4.0 | 0.008 | 1.26 | 0.0 | 0.06 | 13.28 | 0.01 | 1.511 | 46.46 | 0.48 | 13.1 | 86.2 | 0.7 | -5.82 | 0.48 | 0.57 | — | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 11.36 | 0.00 | 2.155 | 10.23 | 0.00 | 6.5 | 93.5 | 0.0 | -0.30 | 1.54 | 0.54 | 0.66 | — | 6548 | 1140 | 5 | 0 | 17 | 0 | 0 | logfile |