Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5JUY	8178	2023-04-28	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	5K0Z	8191	2023-04-21	2016-05-17	2.8	4.15	—	2.8	0.011	1.04	0.0	0.06	10.64	0.01	2.056	18.30	0.00	2.9	97.1	0.0	-4.11	0.73	0.58	1.27	3.1	0.005	1.15	0.0	0.06	17.03	0.01	2.099	33.56	4.91	4.5	95.5	0.0	-0.35	1.52	0.87	0.84	1.07	9749	1268	8	0	0	41	0	logfile
✔	5K10	8192	2023-04-22	2016-05-17	3.8	4.74	—	3.8	0.009	0.93	0.0	0.06	12.22	0.02	2.138	33.42	0.30	6.9	92.6	0.5	-4.07	0.80	0.57	0.98	3.8	0.004	0.84	0.0	0.04	16.04	0.00	2.197	24.77	0.15	3.7	96.0	0.3	-0.14	1.89	0.92	0.86	1.02	6338	794	4	0	2	0	0	logfile
✔	5K11	8193	2023-04-22	2016-05-17	3.8	4.50	—	3.8	0.012	1.23	0.0	0.06	12.12	0.01	2.061	29.53	0.30	6.1	93.4	0.5	-4.89	0.80	0.59	1.53	3.8	0.004	0.88	0.0	0.05	15.49	0.00	2.139	21.59	0.15	4.5	95.5	0.0	-0.28	1.64	0.90	0.84	1.22	6338	794	4	0	2	0	0	logfile
✔	5K12	8194	2023-04-23	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.003	0.56	0.0	0.04	15.71	0.01	2.213	9.95	0.27	1.9	98.1	0.0	2.18	0.90	0.71	0.89	3.52	14856	1764	12	0	0	1086	0	logfile
✔	5K7L	8215	2023-04-27	2016-05-26	3.78	6.37	—	3.6	0.008	1.36	20.0	0.07	13.27	0.00	2.315	9.11	0.35	7.3	92.6	0.1	-0.20	0.75	0.79	1.04	3.6	0.003	0.70	0.0	0.04	13.79	0.00	2.151	11.88	0.22	4.0	96.0	0.0	1.44	2.35	0.75	0.80	0.78	24696	3372	12	0	8	0	0	logfile
✔	5KEL	8240	2023-04-25	2016-06-09	4.3	4.47	—	4.3	0.015	1.82	0.0	0.10	11.37	0.01	1.763	12.56	0.45	3.4	95.3	1.3	1.64	0.78	0.75	—	4.3	0.004	0.86	0.0	0.05	13.58	0.00	2.105	19.99	0.00	8.5	91.1	0.4	-0.95	1.07	0.80	0.81	—	19278	2409	33	0	45	0	0	logfile
✔	5KEN	8242	2023-04-24	2016-06-09	4.3	6.36	5.67	5.5	0.014	1.82	4.0	0.19	11.60	0.01	1.282	7.71	0.22	2.9	95.6	1.4	1.45	0.82	0.71	—	5.5	0.006	0.91	0.0	0.05	13.33	0.01	1.950	43.76	0.00	10.1	89.3	0.7	-2.23	2.80	0.85	0.81	—	16913	2147	24	0	24	0	0	logfile
✔	5KGF	8246	2023-04-22	2016-06-13	4.54	4.64	—	4.5	0.009	1.37	2.0	0.07	27.90	0.01	1.243	27.10	0.12	6.5	93.1	0.4	-4.86	0.79	0.76	—	4.5	0.005	0.74	0.0	0.04	26.39	0.01	2.121	20.23	0.00	7.0	92.8	0.2	-0.78	1.06	0.83	0.84	—	13782	986	14	290	0	0	0	logfile
✔	5KUF	8289	2023-04-26	2016-07-13	3.8	3.80	—	3.7	0.009	1.02	0.0	0.05	8.87	0.01	2.021	29.22	0.08	15.5	84.4	0.1	-5.82	0.61	0.71	1.68	3.7	0.003	0.69	0.0	0.04	13.57	0.00	2.155	13.20	0.35	5.9	94.1	0.0	-1.38	1.57	0.61	0.71	1.29	23728	3000	8	0	4	0	0	logfile
✔	5L4K	4002	2023-04-29	2016-05-25	3.9	4.00	—	4.2	0.007	0.85	3.0	0.05	16.12	0.01	1.808	5.03	3.82	11.8	85.0	3.2	-6.15	0.34	0.64	0.39	4.0	0.004	0.79	0.0	0.04	17.43	0.01	1.906	18.52	0.60	9.2	90.4	0.5	-1.87	1.81	0.37	0.70	0.35	79649	5000	12	0	0	0	39990	logfile
✔	5LD2	4038	2023-04-26	2016-06-23	3.83	4.18	—	3.9	0.010	1.05	2.0	0.05	13.02	0.01	1.975	17.88	0.25	5.7	94.0	0.2	-3.86	0.88	0.87	2.00	3.9	0.004	0.69	0.0	0.04	15.83	0.00	1.912	12.94	0.12	4.6	95.3	0.1	0.46	0.76	0.87	0.86	1.72	23981	2857	5	51	22	0	0	logfile
✔	5Lii	4053	2023-04-19	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	5LiJ	4054	2023-04-19	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.18	0.0	0.04	10.31	0.00	2.148	15.12	0.00	32.0	68.0	0.0	-5.66	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	5LJ3	4055	2023-04-22	2016-07-17	3.8	3.92	—	3.8	0.007	1.46	40.0	0.09	17.30	0.01	1.631	5.99	8.54	8.1	90.7	1.2	-1.69	0.70	0.81	1.37	3.8	0.003	0.72	0.0	0.04	17.08	0.00	2.001	14.49	0.45	4.9	94.9	0.2	0.41	0.85	0.69	0.78	1.39	63161	7305	45	458	142	0	0	logfile
✔	5LJo	4061	2023-04-27	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.70	0.0	0.04	12.76	0.00	1.923	18.84	0.00	12.3	87.3	0.4	-2.48	1.32	0.80	0.80	—	24947	1624	5	0	0	0	12255	logfile
✔	5LKi	4068	2023-04-20	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.51	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.004	0.83	0.0	0.04	15.10	0.00	2.088	15.46	0.70	7.1	92.5	0.4	0.24	0.81	0.63	0.80	1.65	55415	7135	5	0	0	0	0	logfile
✔	5LL6	4071	2023-04-20	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.04	0.01	0.924	4.96	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.009	1.04	0.0	0.05	19.21	0.01	1.715	25.88	1.94	13.6	85.6	0.9	-3.02	0.89	0.70	0.81	0.98	55262	3429	20	1325	5	0	0	logfile
✔	5LMN	4073	2023-04-20	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.85	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.004	0.72	0.0	0.04	17.13	0.00	1.859	19.78	0.87	7.4	92.2	0.3	-1.09	1.56	0.77	0.84	1.29	54149	2623	27	1534	129	0	0	logfile
✔	5LMo	4074	2023-04-20	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.78	0.01	0.968	35.61	0.00	9.3	90.2	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile

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