Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FNA	3241	2023-11-13	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.004	0.85	0.0	0.04	14.28	0.01	2.153	22.99	0.00	8.4	90.4	1.2	-0.31	2.61	0.49	0.75	—	5328	680	8	0	0	0	0	logfile
✔	5FTJ	3295	2023-11-21	2016-01-14	2.3	2.04	—	2.0	0.010	1.30	0.0	0.07	14.89	0.01	1.862	40.83	0.81	5.7	93.3	1.0	-3.32	0.42	0.65	2.67	2.0	0.005	0.91	0.0	0.05	18.72	0.01	2.036	17.11	2.68	7.2	92.7	0.1	-1.40	1.22	0.47	0.68	1.91	34602	4338	18	0	18	120	0	logfile
✔	5FTK	3296	2023-11-21	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.01	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.78	0.01	2.112	16.73	4.31	8.6	91.3	0.1	-1.98	1.25	0.50	0.70	1.75	34374	4338	18	0	12	96	0	logfile
✔	5FTL	3297	2023-11-21	2016-01-14	3.3	2.96	—	2.9	0.010	1.12	0.0	0.06	10.70	0.01	2.214	17.11	0.00	6.1	93.2	0.7	-4.22	0.69	0.81	2.28	2.9	0.004	0.77	0.0	0.05	16.09	0.01	2.100	11.61	0.27	5.9	93.9	0.2	-0.86	2.19	0.69	0.81	1.33	34278	4338	12	0	12	0	0	logfile
✔	5FTM	3298	2023-11-21	2016-01-14	3.2	2.96	—	2.9	0.014	1.34	1.0	0.07	11.93	0.02	2.163	23.59	0.51	7.6	91.7	0.7	-4.68	0.71	0.82	2.33	2.9	0.004	0.76	0.0	0.05	16.13	0.00	2.107	12.64	0.43	7.3	92.4	0.3	-1.63	1.29	0.71	0.82	1.52	34554	4368	12	0	18	0	0	logfile
✔	5FTN	3299	2023-11-21	2016-01-14	3.3	2.95	—	2.9	0.012	1.27	0.0	0.07	10.98	0.01	2.234	22.42	0.32	7.4	91.7	1.0	-4.38	0.62	0.80	3.11	2.9	0.004	0.79	0.0	0.05	15.63	0.01	1.866	12.22	0.29	8.9	90.6	0.5	-0.96	1.29	0.63	0.80	2.19	34956	4422	12	0	24	0	0	logfile
✔	5FUU	3308	2023-11-17	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	11.14	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.004	0.85	0.0	0.05	13.02	0.00	2.160	14.08	0.05	6.9	92.6	0.6	-1.30	0.96	0.77	0.83	—	20735	2281	70	0	213	0	0	logfile
✔	5FWK	3337	2023-11-19	2016-02-17	3.9	3.97	—	3.9	0.016	1.31	0.0	0.07	9.60	0.01	1.173	2.17	0.00	4.0	95.5	0.5	-0.44	0.77	0.77	1.55	3.9	0.003	0.62	0.0	0.04	14.82	0.00	1.821	11.16	0.28	5.7	94.3	0.0	-0.14	1.24	0.77	0.77	1.68	26221	1612	6	0	4	0	13109	logfile
✔	5G04	3385	2023-11-15	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.65	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.008	0.89	0.0	0.04	18.07	0.00	2.003	19.55	0.83	5.9	93.5	0.6	0.04	1.74	0.84	0.77	0.67	65481	8322	22	0	3	0	0	logfile
✔	5G05	3388	2023-11-15	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile
✔	5G06	3366	2023-11-19	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	5G2X	3331	2023-11-17	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.006	0.93	0.0	0.04	19.63	0.01	1.935	41.01	0.91	20.6	78.2	1.3	-4.93	2.35	0.80	0.66	0.49	19072	487	3	704	0	0	0	logfile
✔	5G2Y	3332	2023-11-15	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.48	0.01	1.939	74.53	0.00	0.0	0.0	0.0	—	3.24	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5GAD	8000	2023-11-21	2015-11-24	3.7	4.17	—	3.9	0.009	1.11	1.0	0.05	15.93	0.01	1.737	9.19	10.34	3.5	96.5	0.1	-3.19	0.77	0.79	1.52	3.9	0.006	0.64	0.0	0.03	15.15	0.00	1.073	17.72	0.67	3.9	96.0	0.1	-0.19	1.60	0.81	0.88	1.28	98006	4087	49	3049	507	0	0	logfile
✔	5GAE	8001	2023-11-21	2015-11-25	3.33	3.45	—	3.3	0.007	0.94	0.0	0.04	14.78	0.00	1.884	5.65	5.36	3.0	96.9	0.1	-2.76	0.79	0.88	2.24	3.3	0.007	0.69	0.0	0.04	15.18	0.01	1.783	12.84	0.86	4.2	95.7	0.1	-0.11	1.54	0.79	0.89	2.25	95192	3886	41	3007	349	0	0	logfile
✔	5GAF	8002	2023-11-21	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.87	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.005	0.73	0.0	0.04	15.26	0.01	0.984	21.89	0.03	5.5	94.3	0.1	-1.30	1.41	0.71	0.85	—	96182	3889	47	3049	452	0	0	logfile
✔	5GAG	8003	2023-11-21	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.16	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.005	0.65	0.0	0.04	15.28	0.01	1.012	15.42	0.69	3.7	96.2	0.1	-0.65	0.68	0.78	0.88	2.04	94030	3598	46	3049	473	0	0	logfile
✔	5GAH	8004	2023-11-21	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.30	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.006	0.70	0.0	0.04	15.36	0.01	1.174	15.08	1.21	4.7	95.2	0.1	-0.76	1.16	0.74	0.87	1.51	94027	3595	46	3049	473	0	0	logfile
✔	5GAK	3227	2023-11-18	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.003	0.83	0.0	0.04	19.62	0.01	1.977	24.30	0.53	9.4	90.1	0.4	-2.72	1.99	0.33	0.25	0.07	128975	6434	50	3597	234	0	0	logfile
✔	5GAM	8011	2023-11-17	2015-12-15	3.7	4.03	—	3.9	0.008	1.49	11.0	0.10	19.79	0.01	1.976	11.79	6.60	10.0	88.2	1.8	-2.90	0.72	0.57	1.24	3.9	0.003	0.87	0.0	0.05	18.84	0.00	2.082	17.28	0.67	6.8	93.0	0.2	-1.15	1.71	0.80	0.79	1.05	19123	2002	13	166	19	0	0	logfile

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