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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7A95 | 11685 | 2023-04-29 | 2020-09-01 | 4.3 | 4.83 | 4.39 | 4.3 | 0.003 | 0.47 | 2.0 | 0.04 | 5.77 | 0.00 | 2.226 | 3.53 | 0.90 | 11.0 | 89.0 | 0.0 | -4.57 | 0.87 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29887 | 3794 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Si6 | 25138 | 2023-04-22 | 2021-10-12 | 3.32 | 3.28 | — | 3.3 | 0.003 | 1.22 | 0.0 | 0.04 | 13.58 | 0.00 | 2.044 | 4.51 | 0.00 | 1.4 | 98.6 | 0.0 | 2.88 | 0.46 | 0.77 | 1.67 | 3.3 | 0.003 | 0.85 | 0.0 | 0.04 | 14.76 | 0.00 | 1.919 | 4.22 | 0.41 | 1.7 | 98.3 | 0.0 | 2.52 | 0.39 | 0.52 | 0.82 | 1.82 | 13515 | 873 | 1 | 0 | 2 | 0 | 6910 | logfile |
✔ | 6ZFo | 11184 | 2023-04-24 | 2020-06-17 | 4.4 | 4.43 | — | 4.4 | 0.003 | 0.56 | 0.0 | 0.04 | 10.41 | 0.00 | 2.157 | 3.58 | 1.30 | 4.5 | 95.5 | 0.0 | -0.66 | 0.49 | 0.51 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.04 | 11.46 | 0.00 | 1.946 | 11.31 | 0.00 | 5.3 | 94.7 | 0.0 | -1.00 | 1.56 | 0.53 | 0.59 | — | 18988 | 1252 | 8 | 0 | 2 | 0 | 9310 | logfile |
✔ | 7B5N | 12041 | 2023-04-21 | 2020-12-05 | 3.6 | 3.39 | 3.52 | 3.7 | 0.007 | 0.79 | 0.0 | 0.05 | 15.39 | 0.00 | 1.998 | 13.46 | 0.09 | 9.3 | 90.7 | 0.0 | -1.35 | 0.78 | 0.81 | 1.56 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 16.97 | 0.00 | 2.131 | 9.78 | 0.18 | 5.8 | 94.2 | 0.0 | 0.18 | 0.39 | 0.76 | 0.79 | 1.12 | 9965 | 1229 | 9 | 0 | 10 | 0 | 0 | logfile |
✔ | 7NJQ | 12407 | 2023-04-28 | 2021-02-17 | 2.67 | 2.56 | — | 2.2 | 0.004 | 0.52 | 0.0 | 0.04 | 14.45 | 0.00 | 1.901 | 5.62 | 0.00 | 2.1 | 97.8 | 0.1 | 1.78 | 0.85 | 0.87 | 4.10 | 2.2 | 0.005 | 0.55 | 0.0 | 0.04 | 15.81 | 0.00 | 1.670 | 5.87 | 0.65 | 2.5 | 97.5 | 0.1 | 1.45 | 0.90 | 0.86 | 0.89 | 4.13 | 74669 | 4936 | 31 | 0 | 11 | 16 | 37357 | logfile |
✔ | 7oiU | 12933 | 2023-04-22 | 2021-05-12 | 3.7 | 4.05 | 3.71 | 3.8 | 0.004 | 0.68 | 0.0 | 0.04 | 12.59 | 0.00 | 2.059 | 10.44 | 0.00 | 4.8 | 95.2 | 0.0 | -0.19 | 0.73 | 0.77 | 2.53 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.54 | 0.00 | 2.143 | 10.23 | 0.41 | 5.1 | 94.9 | 0.0 | 0.01 | 0.38 | 0.73 | 0.78 | 2.08 | 12744 | 1683 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XJB | 22205 | 2023-04-21 | 2020-06-23 | 3.8 | 4.06 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 13.11 | 0.00 | 2.165 | 9.70 | 0.00 | 8.6 | 91.4 | 0.0 | -3.06 | 0.88 | 0.82 | 1.76 | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 15.19 | 0.00 | 2.043 | 13.87 | 0.19 | 7.8 | 92.2 | 0.0 | -1.33 | 1.82 | 0.88 | 0.85 | 2.02 | 10070 | 1277 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TTU | 10585 | 2023-04-22 | 2019-12-30 | 3.7 | 3.87 | 3.69 | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 15.10 | 0.00 | 1.312 | 13.58 | 0.29 | 9.3 | 90.7 | 0.0 | -2.77 | 0.82 | 0.80 | 1.42 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 17.04 | 0.00 | 2.078 | 10.66 | 0.22 | 6.3 | 93.7 | 0.0 | -0.02 | 1.64 | 0.82 | 0.80 | 1.13 | 12746 | 1604 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7NJK | 12377 | 2023-04-28 | 2021-02-17 | 2.52 | 2.49 | — | 2.2 | 0.004 | 0.51 | 0.0 | 0.04 | 14.52 | 0.00 | 2.061 | 4.73 | 0.00 | 2.4 | 97.6 | 0.1 | 1.64 | 0.85 | 0.87 | 4.35 | 2.2 | 0.003 | 0.50 | 0.0 | 0.04 | 15.66 | 0.00 | 1.782 | 5.45 | 0.31 | 2.2 | 97.7 | 0.0 | 1.90 | 1.68 | 0.86 | 0.89 | 4.10 | 74650 | 4934 | 31 | 0 | 11 | 16 | 37359 | logfile |
✔ | 7MQF | 23945 | 2023-04-26 | 2021-05-05 | 2.88 | 2.74 | 2.86 | 2.8 | 0.006 | 0.72 | 0.0 | 0.06 | 11.73 | 0.00 | 2.175 | 1.01 | 0.00 | 0.5 | 99.5 | 0.0 | 1.24 | 0.72 | 0.87 | 6.16 | 2.7 | 0.003 | 0.48 | 0.0 | 0.04 | 13.43 | 0.00 | 2.255 | 2.60 | 0.00 | 1.0 | 99.0 | 0.0 | 1.00 | 0.44 | 0.78 | 0.91 | 5.71 | 12288 | 1608 | 16 | 16 | 0 | 0 | 0 | logfile |
✔ | 6VCD | 21149 | 2023-04-20 | 2019-12-20 | 3.0 | 3.21 | — | 3.2 | 0.005 | 0.70 | 0.0 | 0.04 | 14.13 | 0.00 | 2.170 | 9.40 | 0.11 | 10.1 | 89.7 | 0.2 | -4.83 | 0.73 | 0.82 | 3.84 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 16.34 | 0.00 | 2.181 | 9.65 | 2.45 | 7.9 | 91.9 | 0.2 | -1.81 | 0.46 | 0.72 | 0.83 | 2.79 | 8082 | 1033 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7CK6 | 30382 | 2023-04-20 | 2020-07-15 | 3.4 | 4.40 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.06 | 13.48 | 0.00 | 1.652 | 36.32 | 4.12 | 6.1 | 93.1 | 0.8 | 0.38 | 0.57 | 0.73 | 0.93 | 4.1 | 0.004 | 1.04 | 0.0 | 0.05 | 16.53 | 0.00 | 2.151 | 16.93 | 1.12 | 6.3 | 93.7 | 0.0 | 1.06 | 3.64 | 0.58 | 0.80 | 1.03 | 7460 | 936 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NF7 | 12297 | 2023-04-21 | 2021-02-05 | 2.68 | 2.40 | 2.58 | 2.6 | 0.006 | 0.71 | 0.0 | 0.05 | 17.51 | 0.00 | 2.336 | 5.26 | 6.53 | 4.7 | 95.1 | 0.2 | -3.11 | 0.69 | 0.83 | 4.47 | 2.7 | 0.003 | 0.65 | 0.0 | 0.05 | 17.83 | 0.00 | 2.254 | 6.85 | 4.32 | 4.2 | 95.6 | 0.2 | -0.67 | 1.20 | 0.70 | 0.85 | 3.72 | 9642 | 1150 | 8 | 0 | 18 | 0 | 0 | logfile |
✔ | 7Si7 | 25139 | 2023-04-22 | 2021-10-12 | 3.49 | 3.47 | — | 3.4 | 0.003 | 1.32 | 0.0 | 0.04 | 13.13 | 0.00 | 1.963 | 5.23 | 0.00 | 2.6 | 97.4 | 0.0 | 2.38 | 0.49 | 0.78 | 0.67 | 3.4 | 0.002 | 0.92 | 0.0 | 0.04 | 15.00 | 0.00 | 1.950 | 5.49 | 0.17 | 3.1 | 96.9 | 0.0 | 2.10 | 0.51 | 0.51 | 0.83 | 0.96 | 11287 | 728 | 1 | 0 | 2 | 0 | 5777 | logfile |
✔ | 7NF6 | 12296 | 2023-04-21 | 2021-02-05 | 3.05 | 3.03 | 2.87 | 3.2 | 0.006 | 0.75 | 0.0 | 0.05 | 17.57 | 0.00 | 2.114 | 7.83 | 8.17 | 5.0 | 94.9 | 0.1 | -4.80 | 0.69 | 0.85 | 3.59 | 3.2 | 0.003 | 0.67 | 0.0 | 0.04 | 16.94 | 0.00 | 2.188 | 7.60 | 0.64 | 4.5 | 95.4 | 0.1 | -0.35 | 1.63 | 0.69 | 0.86 | 3.16 | 8817 | 1078 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7X91 | 33063 | 2023-04-20 | 2022-03-15 | 4.3 | 5.81 | 4.21 | 4.4 | 0.003 | 0.63 | 0.0 | 0.05 | 14.42 | 0.00 | 2.120 | 11.23 | 0.00 | 10.7 | 89.3 | 0.0 | -2.69 | 0.81 | 0.73 | — | 4.5 | 0.004 | 0.63 | 0.0 | 0.04 | 13.10 | 0.00 | 2.025 | 16.39 | 0.00 | 12.1 | 87.9 | 0.0 | -2.04 | 0.86 | 0.82 | 0.77 | — | 6559 | 427 | 4 | 0 | 2 | 0 | 3196 | logfile |
✔ | 7RUC | 24702 | 2023-04-21 | 2021-08-16 | 3.6 | 3.41 | 3.38 | 3.4 | 0.004 | 0.53 | 0.0 | 0.04 | 14.00 | 0.00 | 1.772 | 7.64 | 0.00 | 4.6 | 95.4 | 0.0 | 1.89 | 0.68 | 0.76 | 2.48 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 16.30 | 0.01 | 1.903 | 9.23 | 0.59 | 3.2 | 96.8 | 0.0 | 1.68 | 0.53 | 0.76 | 0.84 | 2.20 | 10766 | 1344 | 9 | 0 | 5 | 0 | 0 | logfile |
✔ | 6U9E | 20695 | 2023-04-24 | 2019-09-08 | 4.21 | 4.33 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 9.09 | 0.00 | 2.228 | 5.86 | 0.00 | 14.1 | 85.9 | 0.0 | -4.33 | 0.79 | 0.82 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.05 | 11.61 | 0.00 | 2.189 | 10.49 | 0.10 | 10.5 | 89.5 | 0.0 | -2.78 | 1.37 | 0.79 | 0.82 | — | 17175 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F5U | 31467 | 2023-04-25 | 2021-06-22 | 4.1 | 4.16 | — | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 14.71 | 0.00 | 2.101 | 24.28 | 0.00 | 12.3 | 87.6 | 0.1 | -4.58 | 0.82 | 0.84 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 14.04 | 0.00 | 2.136 | 14.13 | 0.00 | 7.4 | 92.5 | 0.1 | -0.91 | 0.70 | 0.82 | 0.82 | — | 20744 | 2740 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Z2J | 11041 | 2023-04-24 | 2020-05-16 | 4.0 | 4.25 | 3.91 | 4.2 | 0.005 | 0.83 | 0.0 | 0.27 | 15.16 | 0.00 | 1.987 | 3.28 | 0.39 | 7.9 | 92.1 | 0.0 | -3.35 | 0.69 | 0.63 | — | 4.2 | 0.004 | 0.69 | 0.0 | 0.04 | 17.18 | 0.00 | 1.893 | 13.08 | 0.59 | 10.5 | 89.5 | 0.0 | -2.13 | 1.52 | 0.71 | 0.68 | — | 18876 | 1185 | 8 | 0 | 8 | 0 | 9273 | logfile |