Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G0Z	29658	2023-11-18	2023-02-01	3.61	3.76	3.60	3.8	0.005	0.74	0.0	0.05	11.86	0.00	1.829	12.10	2.19	5.7	94.3	0.0	0.25	0.52	0.59	1.01	3.8	0.004	0.66	0.0	0.04	16.02	0.00	1.903	12.39	0.36	5.6	94.4	0.0	-0.13	0.94	0.64	0.71	1.23	20944	2592	12	12	10	0	0	logfile
✔	7UiX	26556	2023-11-19	2022-03-29	3.24	3.26	—	3.3	0.004	0.79	0.0	0.04	14.12	0.00	2.013	2.99	0.02	0.1	99.9	0.0	-0.81	0.62	0.80	2.80	3.3	0.012	0.73	0.0	0.04	16.82	0.01	1.703	9.66	0.32	3.3	96.7	0.0	0.33	0.82	0.60	0.84	2.84	76307	4820	20	0	23	0	38286	logfile
✔	7Ki1	22883	2023-11-15	2020-10-22	2.5	2.57	2.46	2.6	0.013	0.93	0.0	0.06	15.54	0.00	2.257	8.41	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.003	0.55	0.0	0.04	16.94	0.00	2.118	6.02	1.85	2.1	97.9	0.0	1.06	0.52	0.65	0.84	3.62	10265	1285	11	0	1	73	0	logfile
✔	7V6A	31740	2023-11-15	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	13.93	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.004	0.73	0.0	0.04	16.34	0.00	2.079	14.99	0.89	4.5	95.5	0.0	-1.13	0.48	0.71	0.70	2.02	8584	1122	5	0	1	0	0	logfile
✔	7XJL	33231	2023-11-14	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.003	0.71	0.0	0.04	15.86	0.00	2.122	16.26	0.58	3.0	97.0	0.0	0.94	0.47	0.62	0.77	1.62	8527	1137	6	0	0	0	0	logfile
✘	7Y7W	33672	2023-11-13	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✔	5MBV	3460	2023-11-18	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	7Z8R	14561	2023-11-16	2022-03-18	2.7	2.85	2.72	2.9	0.002	0.52	0.0	0.04	13.27	0.00	1.991	4.45	0.12	2.0	98.0	0.0	1.79	0.80	0.84	3.22	2.9	0.002	0.52	0.0	0.04	15.89	0.00	2.243	4.45	1.33	2.1	97.9	0.0	2.31	1.97	0.82	0.89	2.60	15124	1950	3	0	3	0	0	logfile
✔	7UC2	26442	2023-11-16	2022-03-15	2.5	2.71	2.55	2.8	0.009	0.94	0.0	0.05	19.35	0.00	2.199	8.35	1.02	1.9	98.1	0.0	0.65	0.75	0.87	4.24	2.8	0.003	0.53	0.0	0.04	18.79	0.00	2.144	8.44	3.06	2.1	97.9	0.0	0.26	0.36	0.75	0.89	4.12	15820	1900	12	0	8	28	0	logfile
✔	7To2	26027	2023-11-13	2022-01-22	3.2	3.55	—	3.5	0.011	1.13	0.0	0.07	12.70	0.00	2.284	5.58	0.84	5.0	95.0	0.0	-1.96	0.80	0.85	2.46	3.5	0.002	0.53	0.0	0.04	14.56	0.00	2.197	7.69	0.33	5.3	94.7	0.0	0.46	1.12	0.78	0.85	2.47	6052	670	3	30	3	0	0	logfile
✔	7PDG	13337	2023-11-14	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	7N28	24128	2023-11-20	2021-05-28	4.2	4.38	4.07	4.2	0.005	0.74	1.0	0.06	14.29	0.00	2.103	12.05	0.16	7.9	92.1	0.0	-1.88	0.85	0.79	—	4.2	0.003	0.63	0.0	0.05	14.22	0.00	2.051	11.69	0.06	6.8	93.2	0.0	-1.52	0.37	0.85	0.79	—	29461	3523	58	0	140	0	0	logfile
✔	7ARB	11878	2023-11-15	2020-10-23	3.41	3.20	—	3.2	0.004	0.65	2.0	0.07	13.95	0.00	1.982	8.37	0.02	3.8	96.1	0.1	0.49	0.78	0.85	3.13	3.2	0.002	0.52	0.0	0.04	15.88	0.00	2.029	7.92	0.09	3.3	96.7	0.0	0.94	1.91	0.81	0.88	2.71	61765	7716	66	0	55	0	0	logfile
✔	7W0o	32246	2023-11-15	2021-11-18	3.78	2.84	3.72	2.3	0.003	0.72	0.0	0.05	13.04	0.00	2.199	13.37	0.00	9.2	90.8	0.0	-1.50	0.72	0.71	1.13	2.3	0.004	0.94	0.0	0.05	16.51	0.01	2.100	17.07	0.80	8.2	91.8	0.0	-1.66	0.70	0.72	0.72	1.18	9106	1159	6	0	0	0	0	logfile
✔	7Q9F	13868	2023-11-21	2021-11-12	3.6	3.95	—	3.7	0.004	0.51	0.0	0.04	9.26	0.00	1.941	4.46	0.45	3.9	96.1	0.0	0.15	0.88	0.86	2.34	3.7	0.003	0.58	0.0	0.04	12.62	0.00	2.113	10.88	0.11	4.6	95.4	0.0	0.10	1.03	0.88	0.86	1.98	34264	4312	29	0	64	0	0	logfile
✔	7Y24	33585	2023-11-14	2022-06-09	3.25	3.61	3.34	3.6	0.004	0.68	2.0	0.06	12.92	0.00	2.208	12.97	0.37	3.0	97.0	0.0	0.69	0.61	0.73	1.83	3.5	0.003	0.63	0.0	0.04	15.21	0.00	2.227	12.72	0.25	3.1	96.9	0.0	0.78	1.19	0.62	0.76	1.47	8229	1127	6	0	2	0	0	logfile
✔	7SNi	25227	2023-11-16	2021-10-28	2.5	2.71	—	2.8	0.006	0.74	0.0	0.05	17.05	0.00	2.239	8.51	0.06	2.1	97.9	0.0	-0.02	0.71	0.80	3.21	2.8	0.005	0.62	0.0	0.05	18.35	0.00	2.007	12.96	1.40	2.6	97.4	0.0	-0.29	0.36	0.68	0.81	3.49	16533	1952	12	0	12	233	0	logfile
✔	8FYA	29562	2023-11-15	2023-01-25	2.91	3.09	2.90	3.1	0.003	0.51	0.0	0.04	16.92	0.00	2.172	12.11	0.09	2.7	97.3	0.0	1.24	0.68	0.78	2.17	3.1	0.004	0.59	0.0	0.04	19.66	0.00	2.121	13.66	2.53	2.5	97.5	0.0	1.06	1.17	0.69	0.81	2.13	11433	1304	8	59	0	0	0	logfile
✘	7X6Q	33025	2023-11-15	2022-03-08	4.5	4.41	4.61	4.3	0.009	0.73	0.0	0.06	9.96	0.00	2.197	0.93	0.01	3.2	96.7	0.2	-0.87	0.78	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64472	8440	16	0	0	0	0	logfile
✔	7TNX	26022	2023-11-13	2022-01-22	3.54	3.76	—	3.8	0.011	1.08	0.0	0.06	13.31	0.00	2.247	6.37	0.17	7.7	92.2	0.2	-2.75	0.70	0.80	2.39	3.8	0.003	0.59	0.0	0.04	15.37	0.00	2.202	8.67	0.51	8.3	91.7	0.0	-0.07	0.50	0.67	0.78	2.39	5753	647	4	23	2	0	0	logfile

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