Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A95	11685	2023-04-29	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.53	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29887	3794	4	0	0	0	0	logfile
✔	7Si6	25138	2023-04-22	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.003	0.85	0.0	0.04	14.76	0.00	1.919	4.22	0.41	1.7	98.3	0.0	2.52	0.39	0.52	0.82	1.82	13515	873	1	0	2	0	6910	logfile
✔	6ZFo	11184	2023-04-24	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	7B5N	12041	2023-04-21	2020-12-05	3.6	3.39	3.52	3.7	0.007	0.79	0.0	0.05	15.39	0.00	1.998	13.46	0.09	9.3	90.7	0.0	-1.35	0.78	0.81	1.56	3.6	0.003	0.61	0.0	0.04	16.97	0.00	2.131	9.78	0.18	5.8	94.2	0.0	0.18	0.39	0.76	0.79	1.12	9965	1229	9	0	10	0	0	logfile
✔	7NJQ	12407	2023-04-28	2021-02-17	2.67	2.56	—	2.2	0.004	0.52	0.0	0.04	14.45	0.00	1.901	5.62	0.00	2.1	97.8	0.1	1.78	0.85	0.87	4.10	2.2	0.005	0.55	0.0	0.04	15.81	0.00	1.670	5.87	0.65	2.5	97.5	0.1	1.45	0.90	0.86	0.89	4.13	74669	4936	31	0	11	16	37357	logfile
✔	7oiU	12933	2023-04-22	2021-05-12	3.7	4.05	3.71	3.8	0.004	0.68	0.0	0.04	12.59	0.00	2.059	10.44	0.00	4.8	95.2	0.0	-0.19	0.73	0.77	2.53	3.8	0.003	0.62	0.0	0.04	14.54	0.00	2.143	10.23	0.41	5.1	94.9	0.0	0.01	0.38	0.73	0.78	2.08	12744	1683	6	0	0	0	0	logfile
✔	6XJB	22205	2023-04-21	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.64	0.0	0.04	15.19	0.00	2.043	13.87	0.19	7.8	92.2	0.0	-1.33	1.82	0.88	0.85	2.02	10070	1277	1	0	0	0	0	logfile
✔	6TTU	10585	2023-04-22	2019-12-30	3.7	3.87	3.69	3.8	0.006	0.88	0.0	0.05	15.10	0.00	1.312	13.58	0.29	9.3	90.7	0.0	-2.77	0.82	0.80	1.42	3.7	0.003	0.66	0.0	0.04	17.04	0.00	2.078	10.66	0.22	6.3	93.7	0.0	-0.02	1.64	0.82	0.80	1.13	12746	1604	9	0	3	0	0	logfile
✔	7NJK	12377	2023-04-28	2021-02-17	2.52	2.49	—	2.2	0.004	0.51	0.0	0.04	14.52	0.00	2.061	4.73	0.00	2.4	97.6	0.1	1.64	0.85	0.87	4.35	2.2	0.003	0.50	0.0	0.04	15.66	0.00	1.782	5.45	0.31	2.2	97.7	0.0	1.90	1.68	0.86	0.89	4.10	74650	4934	31	0	11	16	37359	logfile
✔	7MQF	23945	2023-04-26	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.43	0.00	2.255	2.60	0.00	1.0	99.0	0.0	1.00	0.44	0.78	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	6VCD	21149	2023-04-20	2019-12-20	3.0	3.21	—	3.2	0.005	0.70	0.0	0.04	14.13	0.00	2.170	9.40	0.11	10.1	89.7	0.2	-4.83	0.73	0.82	3.84	3.2	0.003	0.63	0.0	0.04	16.34	0.00	2.181	9.65	2.45	7.9	91.9	0.2	-1.81	0.46	0.72	0.83	2.79	8082	1033	4	0	1	0	0	logfile
✔	7CK6	30382	2023-04-20	2020-07-15	3.4	4.40	—	4.1	0.008	1.14	2.0	0.06	13.48	0.00	1.652	36.32	4.12	6.1	93.1	0.8	0.38	0.57	0.73	0.93	4.1	0.004	1.04	0.0	0.05	16.53	0.00	2.151	16.93	1.12	6.3	93.7	0.0	1.06	3.64	0.58	0.80	1.03	7460	936	11	0	1	0	0	logfile
✔	7NF7	12297	2023-04-21	2021-02-05	2.68	2.40	2.58	2.6	0.006	0.71	0.0	0.05	17.51	0.00	2.336	5.26	6.53	4.7	95.1	0.2	-3.11	0.69	0.83	4.47	2.7	0.003	0.65	0.0	0.05	17.83	0.00	2.254	6.85	4.32	4.2	95.6	0.2	-0.67	1.20	0.70	0.85	3.72	9642	1150	8	0	18	0	0	logfile
✔	7Si7	25139	2023-04-22	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.002	0.92	0.0	0.04	15.00	0.00	1.950	5.49	0.17	3.1	96.9	0.0	2.10	0.51	0.51	0.83	0.96	11287	728	1	0	2	0	5777	logfile
✔	7NF6	12296	2023-04-21	2021-02-05	3.05	3.03	2.87	3.2	0.006	0.75	0.0	0.05	17.57	0.00	2.114	7.83	8.17	5.0	94.9	0.1	-4.80	0.69	0.85	3.59	3.2	0.003	0.67	0.0	0.04	16.94	0.00	2.188	7.60	0.64	4.5	95.4	0.1	-0.35	1.63	0.69	0.86	3.16	8817	1078	6	0	12	0	0	logfile
✔	7X91	33063	2023-04-20	2022-03-15	4.3	5.81	4.21	4.4	0.003	0.63	0.0	0.05	14.42	0.00	2.120	11.23	0.00	10.7	89.3	0.0	-2.69	0.81	0.73	—	4.5	0.004	0.63	0.0	0.04	13.10	0.00	2.025	16.39	0.00	12.1	87.9	0.0	-2.04	0.86	0.82	0.77	—	6559	427	4	0	2	0	3196	logfile
✔	7RUC	24702	2023-04-21	2021-08-16	3.6	3.41	3.38	3.4	0.004	0.53	0.0	0.04	14.00	0.00	1.772	7.64	0.00	4.6	95.4	0.0	1.89	0.68	0.76	2.48	3.4	0.003	0.63	0.0	0.04	16.30	0.01	1.903	9.23	0.59	3.2	96.8	0.0	1.68	0.53	0.76	0.84	2.20	10766	1344	9	0	5	0	0	logfile
✔	6U9E	20695	2023-04-24	2019-09-08	4.21	4.33	—	4.3	0.008	1.08	0.0	0.06	9.09	0.00	2.228	5.86	0.00	14.1	85.9	0.0	-4.33	0.79	0.82	—	4.2	0.003	0.67	0.0	0.05	11.61	0.00	2.189	10.49	0.10	10.5	89.5	0.0	-2.78	1.37	0.79	0.82	—	17175	2148	6	0	0	0	0	logfile
✔	7F5U	31467	2023-04-25	2021-06-22	4.1	4.16	—	3.9	0.007	0.80	0.0	0.04	14.71	0.00	2.101	24.28	0.00	12.3	87.6	0.1	-4.58	0.82	0.84	—	3.9	0.003	0.70	0.0	0.04	14.04	0.00	2.136	14.13	0.00	7.4	92.5	0.1	-0.91	0.70	0.82	0.82	—	20744	2740	4	0	0	0	0	logfile
✔	6Z2J	11041	2023-04-24	2020-05-16	4.0	4.25	3.91	4.2	0.005	0.83	0.0	0.27	15.16	0.00	1.987	3.28	0.39	7.9	92.1	0.0	-3.35	0.69	0.63	—	4.2	0.004	0.69	0.0	0.04	17.18	0.00	1.893	13.08	0.59	10.5	89.5	0.0	-2.13	1.52	0.71	0.68	—	18876	1185	8	0	8	0	9273	logfile

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