Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DNR	27577	2023-09-30	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.30	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.003	0.50	0.0	0.04	15.85	0.00	2.202	4.05	1.73	2.7	97.3	0.0	0.80	0.22	0.68	0.85	3.79	10191	1314	6	0	12	0	0	logfile
✔	8C4T	16428	2023-09-30	2023-01-04	3.23	3.32	3.18	3.3	0.003	0.58	2.0	0.05	16.49	0.00	2.148	8.51	0.36	2.9	97.1	0.0	0.76	0.79	0.84	2.89	3.3	0.003	0.51	0.0	0.04	16.64	0.00	2.180	7.93	0.18	3.6	96.4	0.0	1.30	0.26	0.78	0.84	2.94	10459	1268	3	12	1	0	0	logfile
✔	7U8G	26383	2023-09-30	2022-03-08	3.2	3.47	3.14	3.5	0.006	0.99	0.0	0.05	14.55	0.00	2.157	5.55	0.00	2.5	97.5	0.0	0.96	0.65	0.83	3.28	3.5	0.003	0.51	0.0	0.04	14.71	0.00	1.992	6.84	0.20	2.8	97.2	0.0	1.08	0.32	0.60	0.84	2.88	9907	621	6	0	8	0	4861	logfile
✔	7KJX	22901	2023-09-29	2020-10-26	3.1	3.33	—	3.3	0.005	0.69	0.0	0.04	14.03	0.01	2.100	5.38	0.12	2.3	97.7	0.0	0.94	0.71	0.81	2.85	3.3	0.003	0.51	0.0	0.04	15.38	0.00	1.981	8.19	0.12	2.5	97.5	0.0	0.84	0.47	0.76	0.86	3.07	8589	948	5	44	2	0	0	logfile
✔	7YAH	33712	2023-09-28	2022-06-28	3.12	3.28	3.14	3.3	0.006	0.84	0.0	0.05	15.38	0.01	2.229	8.86	0.35	2.6	97.4	0.0	0.05	0.63	0.71	1.63	3.3	0.002	0.51	0.0	0.04	15.81	0.00	2.209	10.41	0.35	2.2	97.8	0.0	1.52	0.34	0.63	0.74	1.35	7666	999	3	0	2	0	0	logfile
✔	7oDF	12827	2023-09-28	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	16.48	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.002	0.51	0.0	0.04	17.74	0.00	2.060	7.31	2.94	1.6	98.4	0.0	1.79	0.89	0.69	0.80	3.23	6847	703	7	78	2	5	0	logfile
✔	8CV3	27007	2023-09-27	2022-05-17	3.04	2.73	2.97	3.0	0.003	0.51	0.0	0.04	14.07	0.00	2.310	2.76	0.00	2.9	97.1	0.0	1.93	0.52	0.84	2.06	3.1	0.003	0.51	0.0	0.04	14.79	0.00	2.202	4.75	0.58	2.0	98.0	0.0	2.66	0.90	0.48	0.84	2.17	3168	416	1	0	2	0	0	logfile
✔	7RUG	24705	2023-09-28	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.002	0.51	0.0	0.04	13.27	0.00	1.978	14.19	0.00	1.9	98.1	0.0	2.76	1.27	0.60	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	8D49	27178	2023-09-29	2022-06-01	3.2	3.92	3.27	3.7	0.009	0.84	3.0	0.05	15.30	0.01	2.098	6.45	1.14	4.0	95.9	0.1	-0.72	0.86	0.85	3.17	3.7	0.004	0.51	0.0	0.04	15.79	0.00	2.234	4.65	0.10	2.7	97.3	0.0	1.25	1.93	0.85	0.84	2.62	9281	1072	2	26	0	0	0	logfile
✔	8CV2	27006	2023-09-29	2022-05-17	2.44	2.61	2.44	2.8	0.003	0.53	0.0	0.04	14.13	0.00	2.281	3.79	0.00	1.6	98.4	0.0	1.88	0.64	0.85	1.65	2.8	0.002	0.51	0.0	0.04	14.93	0.00	2.275	4.33	1.29	1.0	99.0	0.0	3.10	0.26	0.60	0.83	1.62	9882	1299	6	0	6	0	0	logfile
✔	8DY9	27778	2023-09-30	2022-08-03	3.12	3.48	3.21	3.4	0.003	0.52	1.0	0.04	17.45	0.00	2.007	5.95	0.00	4.5	95.5	0.0	0.42	0.76	0.78	2.45	3.4	0.004	0.51	1.0	0.04	18.15	0.00	1.997	5.48	0.03	5.6	94.4	0.0	0.33	0.20	0.77	0.81	2.34	63435	3777	16	144	5	0	31140	logfile
✔	8BPC	16149	2023-09-29	2022-11-16	2.8	3.02	2.96	3.0	0.004	0.69	0.0	0.05	17.59	0.00	1.557	9.27	3.18	3.0	97.0	0.0	0.55	0.77	0.79	2.55	3.0	0.003	0.51	0.0	0.04	18.08	0.00	1.985	7.58	2.08	2.6	97.4	0.0	1.32	1.31	0.72	0.80	2.86	8433	1030	7	0	6	44	0	logfile
✔	6WRF	21882	2023-09-28	2020-04-29	3.14	3.69	—	3.5	0.011	0.86	0.0	0.05	13.25	0.01	1.975	3.32	0.07	1.0	99.0	0.0	-0.92	0.77	0.73	3.20	3.5	0.003	0.51	0.0	0.04	14.87	0.00	1.797	6.32	0.03	3.9	96.1	0.0	0.93	0.60	0.74	0.80	2.64	53851	3450	27	0	11	7	27016	logfile
✔	8C2H	16390	2023-09-30	2022-12-22	2.64	2.34	2.44	2.5	0.009	1.45	3.0	0.08	16.15	0.01	2.319	2.75	6.15	3.5	96.5	0.0	-1.37	0.57	0.85	5.38	2.5	0.002	0.51	0.0	0.03	14.95	0.00	2.079	3.40	1.88	0.9	99.1	0.0	2.60	0.57	0.63	0.88	3.98	10071	1238	24	0	12	86	0	logfile
✔	8ET3	28585	2023-09-28	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.50	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.003	0.51	0.0	0.04	14.14	0.00	1.961	6.52	0.16	2.9	97.1	0.0	1.24	0.69	0.86	0.80	2.18	56854	3639	22	0	6	0	28542	logfile
✔	7MSX	23971	2023-09-27	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.51	0.0	0.04	14.93	0.00	2.204	4.88	0.25	1.9	98.1	0.0	1.12	1.12	0.78	0.88	3.52	3706	473	1	0	3	0	0	logfile
✔	7ZW6	14993	2023-09-29	2022-05-18	3.7	3.96	3.76	3.7	0.003	0.53	0.0	0.04	16.90	0.00	1.934	8.56	0.31	2.7	97.3	0.0	2.29	0.78	0.59	0.31	3.7	0.002	0.51	0.0	0.04	17.93	0.00	1.920	55.57	0.33	3.2	96.8	0.0	2.03	1.98	0.83	0.72	0.56	57112	6344	8	0	0	0	6176	logfile
✔	8iLV	35547	2023-09-30	2023-03-04	3.19	3.48	3.26	3.5	0.004	0.54	0.0	0.04	18.34	0.00	2.073	8.16	0.26	3.9	96.1	0.0	-0.78	0.73	0.79	2.42	3.5	0.002	0.51	0.0	0.04	18.39	0.00	2.158	9.39	0.18	3.4	96.6	0.0	0.40	0.33	0.72	0.78	2.25	10218	1236	3	0	1	4	0	logfile
✔	8DXR	27774	2023-09-30	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.51	0.0	0.04	3.77	0.00	2.420	0.60	0.00	8.3	91.6	0.1	1.47	0.34	0.67	0.71	—	10435	2101	7	0	0	0	0	logfile
✔	7ELH	31183	2023-09-30	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	12.97	0.00	1.043	9.19	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.003	0.51	0.0	0.04	14.69	0.00	1.859	28.25	0.29	3.7	96.3	0.0	1.24	1.15	0.38	0.89	2.53	114995	13378	27	310	1	0	3098	logfile

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