Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V1Z	31631	2023-02-20	2021-08-07	2.98	3.07	—	3.1	0.003	0.58	0.0	0.05	13.83	0.00	2.207	3.78	0.22	2.9	97.1	0.0	1.19	0.66	0.82	2.96	3.0	0.002	0.54	0.0	0.04	16.33	0.00	2.193	4.70	1.71	2.8	97.2	0.0	1.43	0.60	0.69	0.86	2.23	12588	1592	4	0	0	0	0	logfile
✔	7LJD	23391	2023-02-18	2021-01-28	3.2	3.31	—	3.3	0.004	0.85	0.0	0.06	8.49	0.01	2.294	3.63	0.00	2.2	97.8	0.0	-2.10	0.57	0.72	2.46	3.3	0.002	0.58	0.0	0.04	13.71	0.00	2.174	7.09	0.11	3.0	97.0	0.0	0.45	0.74	0.62	0.79	2.07	8518	1046	6	0	11	0	0	logfile
✔	6X0U	21984	2023-02-17	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	7VQ3	32084	2023-02-17	2021-10-19	3.2	3.40	—	3.4	0.005	0.55	0.0	0.04	14.66	0.00	2.061	5.90	0.00	6.6	93.4	0.0	-0.93	0.65	0.83	2.45	3.4	0.002	0.50	0.0	0.04	16.61	0.00	2.240	6.29	0.00	3.2	96.8	0.0	3.25	0.60	0.63	0.83	1.84	6306	800	2	0	0	0	0	logfile
✔	6T0W	10361	2023-02-19	2019-10-03	3.18	3.27	3.23	3.2	0.008	0.80	0.0	0.05	14.46	0.01	2.251	4.31	6.26	5.6	94.3	0.1	-3.70	0.72	0.85	3.43	3.2	0.002	0.53	0.0	0.04	15.15	0.00	2.200	6.41	0.00	2.7	97.3	0.0	0.10	0.52	0.72	0.86	3.12	10556	1268	4	25	0	0	0	logfile
✔	7VoJ	32050	2023-02-17	2021-10-14	3.0	3.21	—	3.3	0.008	1.01	0.0	0.06	13.59	0.01	2.061	7.62	1.73	3.3	96.5	0.3	-2.46	0.65	0.83	2.35	3.3	0.002	0.56	0.0	0.03	16.62	0.00	1.924	4.63	2.02	2.9	97.1	0.0	3.11	2.16	0.60	0.82	1.75	6318	800	4	0	6	0	0	logfile
✔	6PoS	20418	2023-02-21	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.55	0.0	0.04	13.00	0.00	1.937	10.02	0.03	3.3	96.7	0.0	-0.01	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	7SNG	25225	2023-02-21	2021-10-28	2.8	3.04	—	3.0	0.004	0.63	2.0	0.04	14.54	0.01	2.201	10.64	0.25	3.3	96.5	0.2	-0.68	0.74	0.85	4.43	3.0	0.002	0.55	0.0	0.04	16.98	0.00	2.182	9.94	0.92	3.1	96.8	0.1	0.19	0.38	0.77	0.89	3.71	15204	1868	8	0	0	104	0	logfile
✔	7EKM	31170	2023-02-19	2021-04-05	3.6	3.84	—	3.9	0.005	1.19	0.0	0.05	13.13	0.01	2.215	6.00	4.77	6.4	92.9	0.7	-4.90	0.65	0.75	2.32	3.8	0.002	0.69	0.0	0.04	15.08	0.00	2.152	5.72	0.41	4.5	95.4	0.1	-2.14	1.48	0.65	0.82	1.44	9124	1162	2	0	0	0	0	logfile
✔	7ARB	11878	2023-02-23	2020-10-23	3.41	3.20	—	3.2	0.004	0.65	2.0	0.07	13.95	0.00	1.982	8.34	0.02	3.8	96.1	0.1	0.49	0.78	0.85	3.13	3.2	0.002	0.52	0.0	0.04	15.88	0.00	2.029	7.90	0.09	3.3	96.7	0.0	0.94	1.91	0.81	0.88	2.71	61765	7716	66	0	55	0	0	logfile
✔	6TNi	10534	2023-02-20	2019-12-08	3.4	3.66	3.27	3.5	0.007	1.17	5.0	0.07	13.10	0.01	2.140	6.63	15.63	15.2	84.3	0.5	-5.14	0.72	0.68	3.22	3.5	0.002	0.70	0.0	0.04	11.50	0.00	2.234	6.20	0.59	11.9	88.0	0.1	-0.58	1.57	0.71	0.68	1.66	11625	2134	2	0	0	0	0	logfile
✔	7YZP	14393	2023-02-22	2022-02-21	4.0	4.15	4.02	4.0	0.003	0.62	1.0	0.04	17.63	0.00	1.593	8.29	0.00	4.2	95.8	0.0	0.73	0.83	0.78	—	4.0	0.002	0.63	0.0	0.04	19.11	0.00	2.004	11.04	0.07	3.8	96.2	0.0	0.76	0.37	0.84	0.79	—	14107	1633	9	59	8	0	0	logfile
✔	7WiG	32529	2023-02-18	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.002	0.90	0.0	0.04	15.48	0.00	2.195	5.51	1.13	2.0	98.0	0.0	1.42	0.33	0.79	0.80	2.94	8931	1139	6	0	1	0	0	logfile
✔	7Y5G	33619	2023-02-17	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	7SSP	25412	2023-02-21	2021-11-11	3.5	3.32	3.41	3.7	0.004	0.63	0.0	0.04	14.58	0.00	2.232	4.57	0.00	6.8	93.2	0.0	-3.24	0.71	0.80	1.40	3.6	0.002	0.61	0.0	0.04	16.46	0.00	2.303	4.43	0.17	4.8	95.2	0.0	2.51	1.79	0.71	0.81	1.38	10930	1376	8	0	0	0	0	logfile
✔	7F92	31495	2023-02-23	2021-07-03	3.1	3.23	3.05	3.2	0.008	1.29	0.0	0.05	16.75	0.01	2.271	0.63	2.29	3.0	97.0	0.0	-6.40	0.75	0.90	3.09	3.2	0.002	0.52	0.0	0.03	15.14	0.00	2.314	1.51	0.19	1.2	98.8	0.0	1.49	0.34	0.73	0.90	2.54	21240	2352	36	0	132	264	0	logfile
✔	6L3H	0822	2023-02-20	2019-10-11	3.06	3.17	—	3.2	0.007	0.77	0.0	0.05	13.75	0.00	2.036	4.56	0.16	6.8	93.2	0.0	-4.60	0.71	0.88	2.96	3.2	0.002	0.57	0.0	0.04	15.07	0.00	2.120	4.85	0.41	5.1	94.9	0.0	-0.24	0.38	0.69	0.87	2.06	11966	1482	4	0	8	0	0	logfile
✔	7PX3	13690	2023-02-22	2021-10-07	3.05	3.64	—	3.3	0.003	0.52	0.0	0.04	11.55	0.00	2.241	7.26	5.20	2.4	97.6	0.0	1.05	0.90	0.88	2.96	3.3	0.002	0.61	0.0	0.04	13.55	0.00	2.181	9.75	0.49	3.1	96.8	0.0	1.13	1.88	0.90	0.89	2.62	16430	2041	3	0	0	0	0	logfile
✔	6Si8	10208	2023-02-25	2019-08-09	3.4	3.84	—	3.8	0.010	1.11	0.0	0.07	14.59	0.01	2.250	3.94	2.45	8.3	91.3	0.4	-3.81	0.70	0.76	3.61	3.8	0.002	0.61	0.0	0.04	15.14	0.00	1.974	6.49	0.49	2.9	97.0	0.1	-0.84	0.84	0.73	0.81	3.50	26542	1700	8	0	4	0	13086	logfile
✔	7VGi	31970	2023-02-20	2021-09-16	3.36	3.08	—	3.3	0.005	0.74	0.0	0.05	15.16	0.00	2.032	9.42	0.38	10.5	89.3	0.2	-4.39	0.68	0.83	3.20	3.3	0.002	0.59	0.0	0.04	16.48	0.00	2.051	6.95	0.15	8.4	91.6	0.0	-2.20	0.39	0.69	0.84	2.23	12174	1493	6	0	8	0	0	logfile

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