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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7V1Z | 31631 | 2023-02-20 | 2021-08-07 | 2.98 | 3.07 | — | 3.1 | 0.003 | 0.58 | 0.0 | 0.05 | 13.83 | 0.00 | 2.207 | 3.78 | 0.22 | 2.9 | 97.1 | 0.0 | 1.19 | 0.66 | 0.82 | 2.96 | 3.0 | 0.002 | 0.54 | 0.0 | 0.04 | 16.33 | 0.00 | 2.193 | 4.70 | 1.71 | 2.8 | 97.2 | 0.0 | 1.43 | 0.60 | 0.69 | 0.86 | 2.23 | 12588 | 1592 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LJD | 23391 | 2023-02-18 | 2021-01-28 | 3.2 | 3.31 | — | 3.3 | 0.004 | 0.85 | 0.0 | 0.06 | 8.49 | 0.01 | 2.294 | 3.63 | 0.00 | 2.2 | 97.8 | 0.0 | -2.10 | 0.57 | 0.72 | 2.46 | 3.3 | 0.002 | 0.58 | 0.0 | 0.04 | 13.71 | 0.00 | 2.174 | 7.09 | 0.11 | 3.0 | 97.0 | 0.0 | 0.45 | 0.74 | 0.62 | 0.79 | 2.07 | 8518 | 1046 | 6 | 0 | 11 | 0 | 0 | logfile |
✔ | 6X0U | 21984 | 2023-02-17 | 2020-05-17 | 3.6 | 3.62 | — | 3.6 | 0.004 | 0.62 | 0.0 | 0.04 | 14.50 | 0.00 | 2.277 | 5.74 | 0.00 | 3.7 | 96.1 | 0.3 | -5.79 | 0.26 | 0.78 | 1.89 | 3.6 | 0.002 | 0.69 | 0.0 | 0.04 | 17.79 | 0.00 | 2.197 | 7.98 | 0.29 | 3.2 | 96.8 | 0.0 | 1.27 | 0.82 | 0.27 | 0.79 | 2.52 | 3091 | 398 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VQ3 | 32084 | 2023-02-17 | 2021-10-19 | 3.2 | 3.40 | — | 3.4 | 0.005 | 0.55 | 0.0 | 0.04 | 14.66 | 0.00 | 2.061 | 5.90 | 0.00 | 6.6 | 93.4 | 0.0 | -0.93 | 0.65 | 0.83 | 2.45 | 3.4 | 0.002 | 0.50 | 0.0 | 0.04 | 16.61 | 0.00 | 2.240 | 6.29 | 0.00 | 3.2 | 96.8 | 0.0 | 3.25 | 0.60 | 0.63 | 0.83 | 1.84 | 6306 | 800 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T0W | 10361 | 2023-02-19 | 2019-10-03 | 3.18 | 3.27 | 3.23 | 3.2 | 0.008 | 0.80 | 0.0 | 0.05 | 14.46 | 0.01 | 2.251 | 4.31 | 6.26 | 5.6 | 94.3 | 0.1 | -3.70 | 0.72 | 0.85 | 3.43 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 15.15 | 0.00 | 2.200 | 6.41 | 0.00 | 2.7 | 97.3 | 0.0 | 0.10 | 0.52 | 0.72 | 0.86 | 3.12 | 10556 | 1268 | 4 | 25 | 0 | 0 | 0 | logfile |
✔ | 7VoJ | 32050 | 2023-02-17 | 2021-10-14 | 3.0 | 3.21 | — | 3.3 | 0.008 | 1.01 | 0.0 | 0.06 | 13.59 | 0.01 | 2.061 | 7.62 | 1.73 | 3.3 | 96.5 | 0.3 | -2.46 | 0.65 | 0.83 | 2.35 | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.62 | 0.00 | 1.924 | 4.63 | 2.02 | 2.9 | 97.1 | 0.0 | 3.11 | 2.16 | 0.60 | 0.82 | 1.75 | 6318 | 800 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 6PoS | 20418 | 2023-02-21 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.58 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 13.00 | 0.00 | 1.937 | 10.02 | 0.03 | 3.3 | 96.7 | 0.0 | -0.01 | 1.03 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 7SNG | 25225 | 2023-02-21 | 2021-10-28 | 2.8 | 3.04 | — | 3.0 | 0.004 | 0.63 | 2.0 | 0.04 | 14.54 | 0.01 | 2.201 | 10.64 | 0.25 | 3.3 | 96.5 | 0.2 | -0.68 | 0.74 | 0.85 | 4.43 | 3.0 | 0.002 | 0.55 | 0.0 | 0.04 | 16.98 | 0.00 | 2.182 | 9.94 | 0.92 | 3.1 | 96.8 | 0.1 | 0.19 | 0.38 | 0.77 | 0.89 | 3.71 | 15204 | 1868 | 8 | 0 | 0 | 104 | 0 | logfile |
✔ | 7EKM | 31170 | 2023-02-19 | 2021-04-05 | 3.6 | 3.84 | — | 3.9 | 0.005 | 1.19 | 0.0 | 0.05 | 13.13 | 0.01 | 2.215 | 6.00 | 4.77 | 6.4 | 92.9 | 0.7 | -4.90 | 0.65 | 0.75 | 2.32 | 3.8 | 0.002 | 0.69 | 0.0 | 0.04 | 15.08 | 0.00 | 2.152 | 5.72 | 0.41 | 4.5 | 95.4 | 0.1 | -2.14 | 1.48 | 0.65 | 0.82 | 1.44 | 9124 | 1162 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ARB | 11878 | 2023-02-23 | 2020-10-23 | 3.41 | 3.20 | — | 3.2 | 0.004 | 0.65 | 2.0 | 0.07 | 13.95 | 0.00 | 1.982 | 8.34 | 0.02 | 3.8 | 96.1 | 0.1 | 0.49 | 0.78 | 0.85 | 3.13 | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 15.88 | 0.00 | 2.029 | 7.90 | 0.09 | 3.3 | 96.7 | 0.0 | 0.94 | 1.91 | 0.81 | 0.88 | 2.71 | 61765 | 7716 | 66 | 0 | 55 | 0 | 0 | logfile |
✔ | 6TNi | 10534 | 2023-02-20 | 2019-12-08 | 3.4 | 3.66 | 3.27 | 3.5 | 0.007 | 1.17 | 5.0 | 0.07 | 13.10 | 0.01 | 2.140 | 6.63 | 15.63 | 15.2 | 84.3 | 0.5 | -5.14 | 0.72 | 0.68 | 3.22 | 3.5 | 0.002 | 0.70 | 0.0 | 0.04 | 11.50 | 0.00 | 2.234 | 6.20 | 0.59 | 11.9 | 88.0 | 0.1 | -0.58 | 1.57 | 0.71 | 0.68 | 1.66 | 11625 | 2134 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YZP | 14393 | 2023-02-22 | 2022-02-21 | 4.0 | 4.15 | 4.02 | 4.0 | 0.003 | 0.62 | 1.0 | 0.04 | 17.63 | 0.00 | 1.593 | 8.29 | 0.00 | 4.2 | 95.8 | 0.0 | 0.73 | 0.83 | 0.78 | — | 4.0 | 0.002 | 0.63 | 0.0 | 0.04 | 19.11 | 0.00 | 2.004 | 11.04 | 0.07 | 3.8 | 96.2 | 0.0 | 0.76 | 0.37 | 0.84 | 0.79 | — | 14107 | 1633 | 9 | 59 | 8 | 0 | 0 | logfile |
✔ | 7WiG | 32529 | 2023-02-18 | 2022-01-03 | 2.7 | 2.14 | — | 1.8 | 0.006 | 0.75 | 0.0 | 0.05 | 13.13 | 0.01 | 2.192 | 6.75 | 0.00 | 2.0 | 98.0 | 0.0 | 1.11 | 0.78 | 0.77 | 3.19 | 1.8 | 0.002 | 0.90 | 0.0 | 0.04 | 15.48 | 0.00 | 2.195 | 5.51 | 1.13 | 2.0 | 98.0 | 0.0 | 1.42 | 0.33 | 0.79 | 0.80 | 2.94 | 8931 | 1139 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Y5G | 33619 | 2023-02-17 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | 4.1 | 0.002 | 0.53 | 0.0 | 0.04 | 15.35 | 0.00 | 2.030 | 5.10 | 0.38 | 1.0 | 99.0 | 0.0 | 1.53 | 0.65 | 0.65 | 0.75 | 0.28 | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7SSP | 25412 | 2023-02-21 | 2021-11-11 | 3.5 | 3.32 | 3.41 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 14.58 | 0.00 | 2.232 | 4.57 | 0.00 | 6.8 | 93.2 | 0.0 | -3.24 | 0.71 | 0.80 | 1.40 | 3.6 | 0.002 | 0.61 | 0.0 | 0.04 | 16.46 | 0.00 | 2.303 | 4.43 | 0.17 | 4.8 | 95.2 | 0.0 | 2.51 | 1.79 | 0.71 | 0.81 | 1.38 | 10930 | 1376 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F92 | 31495 | 2023-02-23 | 2021-07-03 | 3.1 | 3.23 | 3.05 | 3.2 | 0.008 | 1.29 | 0.0 | 0.05 | 16.75 | 0.01 | 2.271 | 0.63 | 2.29 | 3.0 | 97.0 | 0.0 | -6.40 | 0.75 | 0.90 | 3.09 | 3.2 | 0.002 | 0.52 | 0.0 | 0.03 | 15.14 | 0.00 | 2.314 | 1.51 | 0.19 | 1.2 | 98.8 | 0.0 | 1.49 | 0.34 | 0.73 | 0.90 | 2.54 | 21240 | 2352 | 36 | 0 | 132 | 264 | 0 | logfile |
✔ | 6L3H | 0822 | 2023-02-20 | 2019-10-11 | 3.06 | 3.17 | — | 3.2 | 0.007 | 0.77 | 0.0 | 0.05 | 13.75 | 0.00 | 2.036 | 4.56 | 0.16 | 6.8 | 93.2 | 0.0 | -4.60 | 0.71 | 0.88 | 2.96 | 3.2 | 0.002 | 0.57 | 0.0 | 0.04 | 15.07 | 0.00 | 2.120 | 4.85 | 0.41 | 5.1 | 94.9 | 0.0 | -0.24 | 0.38 | 0.69 | 0.87 | 2.06 | 11966 | 1482 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7PX3 | 13690 | 2023-02-22 | 2021-10-07 | 3.05 | 3.64 | — | 3.3 | 0.003 | 0.52 | 0.0 | 0.04 | 11.55 | 0.00 | 2.241 | 7.26 | 5.20 | 2.4 | 97.6 | 0.0 | 1.05 | 0.90 | 0.88 | 2.96 | 3.3 | 0.002 | 0.61 | 0.0 | 0.04 | 13.55 | 0.00 | 2.181 | 9.75 | 0.49 | 3.1 | 96.8 | 0.0 | 1.13 | 1.88 | 0.90 | 0.89 | 2.62 | 16430 | 2041 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Si8 | 10208 | 2023-02-25 | 2019-08-09 | 3.4 | 3.84 | — | 3.8 | 0.010 | 1.11 | 0.0 | 0.07 | 14.59 | 0.01 | 2.250 | 3.94 | 2.45 | 8.3 | 91.3 | 0.4 | -3.81 | 0.70 | 0.76 | 3.61 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 15.14 | 0.00 | 1.974 | 6.49 | 0.49 | 2.9 | 97.0 | 0.1 | -0.84 | 0.84 | 0.73 | 0.81 | 3.50 | 26542 | 1700 | 8 | 0 | 4 | 0 | 13086 | logfile |
✔ | 7VGi | 31970 | 2023-02-20 | 2021-09-16 | 3.36 | 3.08 | — | 3.3 | 0.005 | 0.74 | 0.0 | 0.05 | 15.16 | 0.00 | 2.032 | 9.42 | 0.38 | 10.5 | 89.3 | 0.2 | -4.39 | 0.68 | 0.83 | 3.20 | 3.3 | 0.002 | 0.59 | 0.0 | 0.04 | 16.48 | 0.00 | 2.051 | 6.95 | 0.15 | 8.4 | 91.6 | 0.0 | -2.20 | 0.39 | 0.69 | 0.84 | 2.23 | 12174 | 1493 | 6 | 0 | 8 | 0 | 0 | logfile |