Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QER	13938	2023-08-15	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	7KRZ	23013	2023-08-18	2020-11-20	3.2	2.56	3.10	2.8	0.007	0.80	0.0	0.05	14.00	0.00	1.906	7.74	0.19	5.8	94.2	0.0	-2.84	0.74	0.77	3.22	2.8	0.002	0.55	0.0	0.04	15.52	0.00	2.053	6.73	0.23	4.2	95.8	0.0	0.39	0.50	0.78	0.80	2.98	24745	3127	13	0	28	0	0	logfile
✔	7LPB	23475	2023-08-15	2021-02-11	3.54	3.01	3.50	3.6	0.012	1.07	0.0	0.06	18.06	0.01	2.226	10.00	0.00	5.7	94.3	0.0	-1.27	0.61	0.75	2.16	3.6	0.002	0.51	0.0	0.04	16.38	0.00	2.293	5.88	0.25	1.7	98.3	0.0	1.02	1.62	0.60	0.69	1.48	18392	2384	8	0	28	0	0	logfile
✔	7RPK	24617	2023-08-11	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.28	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.002	0.60	0.0	0.04	15.57	0.00	2.225	6.54	1.24	2.3	97.7	0.0	2.44	1.02	0.70	0.86	3.40	10018	1104	5	0	40	42	0	logfile
✔	7EW4	31347	2023-08-11	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.43	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.002	0.52	0.0	0.04	15.13	0.00	2.101	8.96	0.62	2.8	97.2	0.0	0.62	0.39	0.70	0.81	2.46	8929	1145	6	0	3	0	0	logfile
✔	8CX2	27034	2023-08-13	2022-05-19	3.2	3.94	3.21	3.2	0.004	0.57	0.0	0.04	14.82	0.00	2.264	4.01	0.00	2.2	97.8	0.0	0.64	0.83	0.76	2.56	3.3	0.002	0.63	0.0	0.04	16.26	0.00	2.219	9.13	0.13	2.4	97.6	0.0	0.95	1.15	0.85	0.82	2.10	15041	1756	16	18	6	0	0	logfile
✔	7VDC	31913	2023-08-11	2021-09-06	3.28	2.77	3.31	2.7	0.002	0.52	0.0	0.04	14.50	0.01	2.066	9.92	0.09	3.0	97.0	0.0	0.15	0.63	0.73	1.31	2.7	0.002	0.53	0.0	0.04	16.32	0.00	2.093	9.92	0.18	3.6	96.4	0.0	0.81	0.36	0.63	0.76	0.97	10472	1372	4	0	0	0	0	logfile
✔	8HBE	34623	2023-08-10	2022-10-28	3.2	3.29	—	3.4	0.007	0.73	0.0	0.05	15.14	0.00	2.217	8.96	0.00	3.5	96.5	0.0	-0.20	0.65	0.79	2.27	3.3	0.002	0.54	0.0	0.04	15.57	0.00	2.247	7.26	0.11	2.6	97.4	0.0	1.04	1.07	0.65	0.80	2.06	8610	1114	2	0	1	0	0	logfile
✔	8AG5	15416	2023-08-13	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.51	0.0	0.04	17.77	0.00	2.178	6.94	0.45	3.7	96.3	0.0	0.53	0.87	0.76	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	7LFY	23309	2023-08-13	2021-01-19	3.6	3.05	—	3.4	0.012	0.64	0.0	0.05	13.11	0.00	2.226	10.09	0.25	2.3	97.7	0.0	-1.18	0.65	0.81	2.47	3.4	0.002	0.53	0.0	0.04	15.57	0.00	2.188	11.10	0.31	2.3	97.7	0.0	0.96	0.77	0.67	0.82	1.67	14851	1800	12	0	7	4	0	logfile
✔	7ViE	32006	2023-08-11	2021-09-26	2.86	3.10	—	3.1	0.004	0.60	0.0	0.04	13.42	0.00	2.198	8.76	0.51	1.9	98.1	0.0	0.89	0.69	0.84	3.88	3.1	0.002	0.51	0.0	0.04	15.98	0.00	2.082	8.87	1.64	2.2	97.8	0.0	1.00	0.91	0.64	0.85	3.34	8905	1134	6	0	1	0	0	logfile
✔	7RHK	24464	2023-08-13	2021-07-17	3.27	2.87	—	3.1	0.012	0.72	0.0	0.05	14.31	0.00	2.260	6.51	0.00	2.8	97.2	0.0	0.46	0.63	0.83	1.80	3.1	0.002	0.47	0.0	0.04	15.69	0.00	2.193	10.72	0.25	2.7	97.3	0.1	2.00	0.30	0.62	0.85	1.98	14682	1776	8	0	5	0	0	logfile
✔	7P1K	13163	2023-08-10	2021-07-01	3.64	3.10	3.45	3.2	0.014	1.12	0.0	0.05	13.27	0.02	2.023	12.65	4.61	4.2	95.8	0.0	-0.19	0.54	0.70	1.60	3.2	0.002	0.63	0.0	0.04	15.36	0.00	2.228	6.92	0.29	4.3	95.7	0.0	1.89	1.26	0.56	0.70	1.85	6892	866	4	0	12	0	0	logfile
✔	8FXi	29534	2023-08-20	2023-01-24	2.7	2.87	2.84	2.9	0.014	2.10	93.0	0.12	12.93	0.02	1.801	6.73	3.12	7.1	92.1	0.8	-1.18	0.53	0.65	2.55	2.8	0.002	0.61	0.0	0.05	15.70	0.00	2.158	3.79	1.90	6.1	93.7	0.2	-0.92	0.96	0.74	0.83	2.57	29641	3684	10	0	6	0	0	logfile
✔	7WV9	32850	2023-08-10	2022-02-10	3.36	3.51	—	3.6	0.005	0.77	0.0	0.05	13.78	0.00	2.206	11.96	0.53	5.0	94.9	0.1	-0.80	0.57	0.67	1.09	3.6	0.002	0.60	0.0	0.04	15.49	0.00	2.234	12.64	0.32	4.6	95.4	0.0	-0.65	0.94	0.59	0.71	0.52	8848	1141	6	0	2	0	0	logfile
✔	7LFX	23308	2023-08-13	2021-01-19	3.1	2.80	—	3.0	0.012	0.64	0.0	0.05	13.11	0.00	2.226	9.82	0.25	2.3	97.7	0.0	-1.18	0.64	0.81	2.40	3.0	0.002	0.48	0.0	0.04	15.75	0.00	2.269	13.28	0.31	3.3	96.7	0.0	1.06	0.81	0.65	0.85	2.46	14846	1800	8	0	6	0	0	logfile
✔	7LCJ	23275	2023-08-09	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	8CSW	26973	2023-08-09	2022-05-13	2.5	2.22	2.46	2.3	0.007	0.86	0.0	0.06	14.46	0.01	2.219	5.03	2.33	1.2	98.8	0.0	0.83	0.64	0.88	6.02	2.3	0.002	0.52	0.0	0.04	16.70	0.00	2.152	4.25	1.25	1.4	98.6	0.0	1.11	0.50	0.62	0.88	5.56	5332	657	1	0	0	165	0	logfile
✔	7X7R	33046	2023-08-11	2022-03-10	3.5	4.18	3.46	4.1	0.002	0.58	0.0	0.04	16.46	0.00	2.058	11.61	0.00	7.7	92.3	0.0	-1.19	0.71	0.68	1.20	4.1	0.002	0.64	0.0	0.04	17.97	0.00	2.023	12.62	0.22	8.4	91.6	0.0	-1.12	1.03	0.65	0.64	1.05	10529	1237	3	56	4	0	0	logfile
✔	7LRC	23494	2023-08-09	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.45	0.00	2.007	9.75	0.90	0.8	99.2	0.0	3.50	0.56	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile

• ← previous
• Page 6 of 542
• next →