Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BES	12158	2023-11-14	2020-12-24	2.85	2.95	2.86	2.9	0.013	1.03	0.0	0.05	10.71	0.00	2.236	7.96	0.85	0.3	99.7	0.0	0.37	0.73	0.82	3.32	2.9	0.004	0.57	0.0	0.04	15.76	0.00	2.083	9.60	3.28	1.1	98.9	0.0	0.39	1.15	0.73	0.84	2.91	9446	1234	12	6	4	0	0	logfile
✔	6UZ8	20953	2023-11-18	2019-11-14	2.84	3.21	—	3.1	0.008	1.05	4.0	0.06	13.81	0.02	2.298	2.20	0.17	4.3	95.7	0.0	-3.69	0.72	0.84	3.29	3.1	0.003	1.07	0.0	0.04	15.19	0.00	2.156	4.73	0.61	3.3	96.7	0.0	1.58	0.44	0.76	0.88	2.82	23320	2936	8	0	16	0	0	logfile
✔	7XGR	33187	2023-11-13	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile
✔	7PRU	13610	2023-11-14	2021-09-22	3.2	3.55	3.24	3.5	0.010	1.05	0.0	0.06	14.41	0.01	2.128	9.65	0.00	6.8	93.2	0.0	-2.01	0.67	0.83	2.06	3.5	0.004	0.67	0.0	0.04	16.19	0.00	2.166	10.90	0.21	5.3	94.7	0.0	0.70	0.92	0.66	0.84	1.75	9116	1164	4	0	2	0	0	logfile
✔	7BL3	12216	2023-11-21	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.43	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.003	0.59	0.0	0.03	15.26	0.00	2.015	15.70	0.48	8.1	91.9	0.0	-1.52	0.54	0.75	0.82	0.94	92831	3612	39	3021	2	27	0	logfile
✔	5LMV	4083	2023-11-14	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.003	0.72	0.0	0.04	16.73	0.01	2.048	27.68	0.00	6.8	92.7	0.5	-1.55	2.19	0.77	0.75	—	59470	3124	30	1612	4	0	0	logfile
✔	7XSS	33433	2023-11-16	2022-05-15	3.2	2.32	3.17	2.1	0.003	0.61	0.0	0.04	17.99	0.01	2.143	8.25	0.59	5.7	94.2	0.1	-0.24	0.78	0.79	2.22	2.1	0.003	0.59	0.0	0.04	18.24	0.00	2.142	9.25	0.41	6.0	94.0	0.0	0.12	1.08	0.77	0.80	2.37	16847	1942	4	54	4	0	0	logfile
✔	8CY6	27068	2023-11-14	2022-05-23	3.2	3.98	3.39	3.6	0.003	0.50	0.0	0.04	10.43	0.00	2.024	7.15	0.16	3.0	96.8	0.2	0.26	0.82	0.78	2.02	3.6	0.004	0.51	0.0	0.04	11.67	0.00	2.016	7.45	0.10	4.5	95.5	0.0	-0.15	0.39	0.83	0.80	2.07	56077	3666	6	0	0	0	27658	logfile
✔	6ZHY	11221	2023-11-14	2020-06-24	3.0	3.57	2.97	3.1	0.005	0.91	0.0	0.06	27.29	0.01	2.316	3.82	0.21	1.5	98.5	0.0	0.65	0.90	0.87	4.24	3.1	0.004	0.62	0.0	0.03	29.00	0.00	2.105	8.70	3.20	1.6	98.4	0.0	3.33	0.59	0.91	0.90	3.34	8999	562	9	220	0	0	0	logfile
✔	8FHP	29098	2023-11-14	2022-12-14	3.04	3.38	3.13	3.3	0.009	0.80	0.0	0.05	13.21	0.01	2.227	5.38	0.39	3.8	96.2	0.0	-1.88	0.61	0.85	2.63	3.3	0.003	0.52	0.0	0.04	15.11	0.00	2.233	2.93	0.00	2.6	97.4	0.0	0.54	0.32	0.54	0.82	2.12	7306	950	4	0	4	0	0	logfile
✔	7PEW	13359	2023-11-16	2021-08-11	4.6	5.68	—	4.1	0.006	0.91	0.0	0.05	30.24	0.01	2.249	5.53	0.00	1.1	98.9	0.0	-0.20	0.89	0.85	—	4.1	0.004	0.65	0.0	0.04	29.78	0.00	2.129	18.07	0.00	2.1	97.9	0.0	1.55	1.21	0.89	0.85	—	13304	768	10	352	0	0	0	logfile
✔	7YoU	33987	2023-11-17	2022-08-02	3.41	3.21	3.36	3.3	0.008	1.00	0.0	0.06	10.41	0.01	2.288	5.17	0.34	6.9	93.1	0.0	-3.52	0.78	0.83	2.72	3.3	0.003	0.69	0.0	0.04	14.48	0.00	2.165	11.03	0.20	4.7	95.3	0.0	0.56	1.67	0.79	0.84	1.63	18266	2321	5	0	0	0	0	logfile
✔	8CYA	27072	2023-11-14	2022-05-23	2.7	3.50	2.73	3.0	0.003	0.56	0.0	0.05	11.67	0.00	1.935	6.76	0.06	4.8	95.0	0.2	0.52	0.83	0.75	1.85	3.1	0.005	0.55	0.0	0.04	12.83	0.00	2.004	10.58	0.47	5.7	94.2	0.1	-0.07	0.40	0.85	0.80	2.12	57833	3681	29	0	88	0	27935	logfile
✔	3JAD	6344	2023-11-15	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✔	6ZHX	11220	2023-11-15	2020-06-24	2.5	3.01	2.43	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.63	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.004	0.59	0.0	0.03	28.46	0.00	2.100	4.68	0.62	0.8	99.2	0.0	2.98	0.45	0.89	0.92	4.47	12313	784	22	290	0	146	0	logfile
✔	8FHQ	29099	2023-11-14	2022-12-14	2.81	3.05	2.83	3.1	0.008	0.82	0.0	0.05	13.69	0.01	2.303	4.02	0.65	3.5	96.5	0.0	-1.14	0.62	0.86	3.75	3.1	0.003	0.51	0.0	0.04	14.99	0.00	2.260	3.20	0.65	2.3	97.7	0.0	0.60	0.91	0.62	0.87	3.66	7306	950	4	0	4	0	0	logfile
✔	7LJF	23392	2023-11-16	2021-01-29	4.0	4.34	—	4.2	0.003	0.62	0.0	0.04	13.74	0.00	1.987	14.43	0.41	3.4	96.6	0.0	0.00	0.83	0.80	—	4.2	0.003	0.69	0.0	0.04	15.60	0.00	1.849	16.83	0.18	4.1	95.9	0.0	-0.19	0.34	0.82	0.81	—	15742	2007	9	0	6	0	0	logfile
✔	7oTP	13064	2023-11-20	2021-06-10	3.4	3.69	—	3.6	0.007	0.87	0.0	0.05	14.56	0.01	2.017	14.76	0.16	8.6	91.2	0.2	-1.62	0.80	0.80	1.68	3.6	0.003	0.70	0.0	0.04	15.93	0.00	1.972	10.80	0.28	6.4	93.6	0.0	-0.56	1.37	0.80	0.81	1.25	29039	3636	1	0	23	0	0	logfile
✔	8FHT	29103	2023-11-14	2022-12-15	3.02	3.34	3.05	3.2	0.004	0.63	3.0	0.05	12.98	0.00	2.220	6.63	0.96	1.8	98.2	0.0	2.06	0.60	0.80	2.43	3.3	0.003	0.50	0.0	0.04	14.20	0.00	2.169	6.85	0.41	2.3	97.7	0.0	2.48	0.39	0.57	0.80	2.13	7006	936	4	0	4	0	0	logfile
✔	7MoA	23922	2023-11-15	2021-05-01	4.9	4.75	—	4.0	0.011	1.37	0.0	0.08	18.23	0.01	1.983	27.58	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.72	0.0	0.05	13.33	0.00	2.133	15.77	0.00	4.8	95.2	0.1	-1.11	0.92	0.84	0.78	—	12511	1580	5	0	12	0	0	logfile

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