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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8Q9G | 18280 | 2023-11-14 | 2023-08-20 | 2.65 | 1.99 | 2.52 | 2.2 | 0.011 | 1.95 | 0.0 | 0.09 | 10.25 | 0.01 | 2.554 | 0.00 | 0.00 | 1.6 | 98.4 | 0.0 | -1.98 | 0.25 | 0.66 | 6.26 | 2.2 | 0.003 | 0.58 | 0.0 | 0.05 | 17.24 | 0.00 | 2.070 | 2.20 | 0.26 | 1.9 | 98.1 | 0.0 | -1.97 | 1.38 | 0.35 | 0.84 | 6.30 | 6822 | 438 | 6 | 0 | 0 | 0 | 3480 | logfile |
✔ | 7QJY | 14026 | 2023-11-13 | 2021-12-17 | 3.14 | 2.93 | 3.08 | 3.1 | 0.011 | 1.87 | 0.0 | 0.09 | 12.32 | 0.01 | 2.519 | 0.00 | 0.25 | 5.7 | 94.3 | 0.0 | -2.50 | 0.38 | 0.82 | 5.27 | 3.1 | 0.007 | 0.81 | 0.0 | 0.05 | 17.02 | 0.00 | 2.151 | 8.68 | 0.76 | 2.3 | 97.7 | 0.0 | -2.24 | 3.43 | 0.35 | 0.83 | 4.41 | 3444 | 450 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UN5 | 26613 | 2023-11-13 | 2022-04-08 | 3.13 | 3.63 | 3.08 | 3.6 | 0.004 | 0.72 | 0.0 | 0.04 | 14.46 | 0.00 | 2.387 | 11.64 | 0.51 | 7.0 | 93.0 | 0.0 | -3.83 | 0.40 | 0.80 | 4.50 | 3.6 | 0.005 | 0.77 | 0.0 | 0.04 | 15.18 | 0.00 | 2.237 | 10.71 | 0.77 | 8.5 | 91.5 | 0.0 | -3.92 | 0.47 | 0.35 | 0.74 | 4.54 | 4380 | 620 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oZG | 13123 | 2023-11-13 | 2021-06-28 | 3.3 | 3.21 | 2.71 | 3.6 | 0.023 | 1.83 | 0.0 | 0.10 | 12.75 | 0.01 | 2.254 | 17.09 | 0.00 | 8.7 | 91.3 | 0.0 | -4.01 | 0.40 | 0.73 | 3.72 | 3.7 | 0.006 | 0.83 | 0.0 | 0.05 | 15.17 | 0.00 | 2.314 | 18.76 | 0.61 | 15.2 | 84.8 | 0.0 | -4.68 | 3.41 | 0.35 | 0.68 | 5.07 | 4960 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GWB | 34308 | 2023-11-18 | 2022-09-16 | 2.75 | 2.95 | 2.85 | 25.0 | 0.009 | 1.07 | 1.0 | 0.05 | 16.02 | 0.01 | 1.556 | 16.84 | 2.25 | 7.5 | 92.3 | 0.2 | -2.40 | 0.29 | 0.01 | 0.23 | 25.0 | 0.003 | 0.73 | 0.0 | 0.04 | 16.78 | 0.01 | 2.097 | 16.95 | 2.56 | 7.1 | 92.8 | 0.1 | -1.58 | 1.60 | 0.35 | 0.15 | 0.37 | 21879 | 2655 | 16 | 54 | 10 | 7 | 0 | logfile |
✔ | 6oEE | 20020 | 2023-11-19 | 2019-03-27 | 3.8 | 3.96 | — | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 17.19 | 0.01 | 2.159 | 9.17 | 3.57 | 14.9 | 85.1 | 0.0 | -4.60 | 0.35 | 0.74 | 0.83 | 3.8 | 0.003 | 0.79 | 0.0 | 0.04 | 17.76 | 0.00 | 2.249 | 11.89 | 0.67 | 12.7 | 87.3 | 0.0 | -1.07 | 0.97 | 0.35 | 0.75 | 0.82 | 28000 | 3402 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QCP | 18331 | 2023-11-14 | 2023-08-28 | 3.21 | 3.22 | 3.18 | 3.3 | 0.011 | 1.86 | 1.0 | 0.09 | 11.52 | 0.01 | 2.543 | 0.00 | 0.00 | 7.5 | 92.5 | 0.0 | -2.03 | 0.31 | 0.78 | 5.53 | 3.3 | 0.003 | 0.58 | 0.0 | 0.05 | 15.97 | 0.00 | 2.209 | 1.86 | 0.00 | 3.9 | 96.1 | 0.0 | -2.06 | 3.54 | 0.35 | 0.85 | 5.32 | 7002 | 453 | 6 | 0 | 0 | 0 | 3567 | logfile |
✔ | 7YNT | 33971 | 2023-11-13 | 2022-07-31 | 3.1 | 2.98 | 2.27 | 4.1 | 0.004 | 0.59 | 0.0 | 0.06 | 11.35 | 0.00 | 2.275 | 13.34 | 0.00 | 8.9 | 91.1 | 0.0 | -5.55 | 0.42 | 0.70 | 4.17 | 4.1 | 0.003 | 0.65 | 0.0 | 0.06 | 13.89 | 0.00 | 2.253 | 12.32 | 0.00 | 10.7 | 89.3 | 0.0 | -4.65 | 0.46 | 0.36 | 0.63 | 3.65 | 2364 | 348 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QJX | 14025 | 2023-11-16 | 2021-12-17 | 2.99 | 3.05 | 3.00 | 2.8 | 0.014 | 2.56 | 5.0 | 0.24 | 13.83 | 0.02 | 2.532 | 0.29 | 0.00 | 1.7 | 98.2 | 0.1 | -2.52 | 0.35 | 0.70 | 3.48 | 2.8 | 0.004 | 1.21 | 0.0 | 0.31 | 16.31 | 0.01 | 2.139 | 3.54 | 1.41 | 6.7 | 93.3 | 0.0 | -3.59 | 3.49 | 0.36 | 0.78 | 3.32 | 13860 | 900 | 12 | 0 | 0 | 0 | 7056 | logfile |
✔ | 7U16 | 26279 | 2023-11-13 | 2022-02-19 | 2.7 | 3.30 | — | 3.5 | 0.004 | 0.62 | 0.0 | 0.06 | 12.93 | 0.00 | 2.310 | 8.58 | 0.00 | 6.8 | 93.2 | 0.0 | -2.67 | 0.29 | 0.68 | 2.62 | 3.5 | 0.003 | 0.57 | 0.0 | 0.06 | 15.61 | 0.00 | 2.200 | 6.25 | 1.84 | 6.5 | 93.5 | 0.0 | -2.62 | 1.74 | 0.36 | 0.80 | 5.02 | 3456 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7TMC | 25995 | 2023-11-13 | 2022-01-19 | 3.25 | 3.24 | 2.95 | 4.2 | 0.005 | 0.72 | 0.0 | 0.07 | 14.28 | 0.01 | 2.152 | 13.78 | 0.00 | 9.5 | 90.5 | 0.0 | -4.08 | 0.21 | 0.31 | -0.39 | 3.4 | 0.005 | 0.89 | 0.0 | 0.07 | 17.14 | 0.01 | 2.144 | 18.47 | 0.53 | 12.0 | 88.0 | 0.0 | -4.18 | 1.94 | 0.36 | 0.76 | 3.09 | 3426 | 405 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7QKJ | 14044 | 2023-11-14 | 2021-12-17 | 3.26 | 3.08 | 3.11 | 3.2 | 0.012 | 2.04 | 12.0 | 0.16 | 11.59 | 0.01 | 2.510 | 0.21 | 0.00 | 9.9 | 90.1 | 0.0 | -2.24 | 0.35 | 0.71 | 3.92 | 3.2 | 0.005 | 0.79 | 0.0 | 0.05 | 15.54 | 0.00 | 2.135 | 10.82 | 0.25 | 7.9 | 92.1 | 0.0 | -2.54 | 1.07 | 0.36 | 0.85 | 3.02 | 6888 | 900 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T2E | 25611 | 2023-11-13 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DA4 | 30622 | 2023-11-13 | 2020-10-14 | 4.24 | 3.75 | — | 4.2 | 0.010 | 1.54 | 0.0 | 0.08 | 17.16 | 0.01 | 2.245 | 79.80 | 0.00 | 50.0 | 50.0 | 0.0 | -8.65 | 0.39 | 0.66 | — | 4.3 | 0.004 | 0.94 | 0.0 | 0.04 | 10.84 | 0.00 | 2.229 | 17.17 | 0.00 | 21.7 | 78.3 | 0.0 | -5.61 | 3.07 | 0.36 | 0.60 | — | 507 | 66 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N5F | 24188 | 2023-11-13 | 2021-06-05 | 2.7 | 2.27 | 2.74 | 2.0 | 0.023 | 1.50 | 0.0 | 0.10 | 9.99 | 0.01 | 2.468 | 0.16 | 0.00 | 1.3 | 98.7 | 0.0 | 1.68 | 0.36 | 0.75 | 3.32 | 1.7 | 0.003 | 0.57 | 0.0 | 0.04 | 17.55 | 0.00 | 2.307 | 7.74 | 1.59 | 1.6 | 98.4 | 0.0 | 2.51 | 0.79 | 0.36 | 0.78 | 3.13 | 3037 | 386 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QKG | 14041 | 2023-11-13 | 2021-12-17 | 3.36 | 3.19 | 3.09 | 3.4 | 0.010 | 2.03 | 0.0 | 0.10 | 10.76 | 0.01 | 2.528 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.98 | 0.38 | 0.80 | 4.23 | 3.5 | 0.003 | 0.59 | 0.0 | 0.05 | 13.27 | 0.00 | 2.236 | 5.27 | 0.00 | 4.5 | 95.5 | 0.0 | -1.51 | 1.16 | 0.36 | 0.83 | 4.87 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 7QJZ | 14027 | 2023-11-13 | 2021-12-17 | 3.4 | 3.37 | 3.42 | 3.5 | 0.011 | 2.09 | 0.0 | 0.10 | 13.72 | 0.01 | 2.490 | 0.44 | 0.00 | 5.3 | 94.4 | 0.2 | -3.28 | 0.40 | 0.74 | 4.32 | 3.5 | 0.004 | 0.78 | 0.0 | 0.05 | 14.64 | 0.00 | 2.193 | 7.85 | 1.54 | 7.9 | 92.1 | 0.0 | -2.92 | 4.00 | 0.36 | 0.76 | 4.40 | 3378 | 444 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU7 | 7618 | 2023-11-13 | 2018-03-23 | 3.5 | 3.63 | — | 4.3 | 0.007 | 0.99 | 0.0 | 0.07 | 9.61 | 0.00 | 2.346 | 4.58 | 2.38 | 15.5 | 84.5 | 0.0 | -4.74 | 0.38 | 0.72 | 2.52 | 4.3 | 0.003 | 0.60 | 0.0 | 0.05 | 13.65 | 0.00 | 2.209 | 12.68 | 0.48 | 13.1 | 86.9 | 0.0 | -4.33 | 1.75 | 0.36 | 0.70 | 2.29 | 4140 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JJo | 36361 | 2023-11-13 | 2023-05-31 | 3.4 | 3.75 | 3.53 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 17.03 | 0.00 | 2.184 | 10.68 | 0.31 | 5.7 | 94.3 | 0.0 | -0.11 | 0.40 | 0.71 | 1.06 | 3.8 | 0.003 | 0.54 | 0.0 | 0.04 | 17.92 | 0.00 | 2.198 | 9.53 | 0.62 | 5.1 | 94.6 | 0.3 | 0.97 | 0.38 | 0.36 | 0.72 | 1.41 | 3016 | 375 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QK5 | 14038 | 2023-11-15 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.10 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.004 | 0.63 | 0.0 | 0.05 | 18.16 | 0.01 | 2.237 | 3.82 | 1.88 | 3.9 | 96.1 | 0.0 | -1.69 | 1.47 | 0.36 | 0.82 | 7.53 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |