Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q9G	18280	2023-11-14	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.003	0.58	0.0	0.05	17.24	0.00	2.070	2.20	0.26	1.9	98.1	0.0	-1.97	1.38	0.35	0.84	6.30	6822	438	6	0	0	0	3480	logfile
✔	7QJY	14026	2023-11-13	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.007	0.81	0.0	0.05	17.02	0.00	2.151	8.68	0.76	2.3	97.7	0.0	-2.24	3.43	0.35	0.83	4.41	3444	450	6	0	0	0	0	logfile
✔	7UN5	26613	2023-11-13	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	11.64	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.77	0.0	0.04	15.18	0.00	2.237	10.71	0.77	8.5	91.5	0.0	-3.92	0.47	0.35	0.74	4.54	4380	620	10	0	0	0	0	logfile
✔	7oZG	13123	2023-11-13	2021-06-28	3.3	3.21	2.71	3.6	0.023	1.83	0.0	0.10	12.75	0.01	2.254	17.09	0.00	8.7	91.3	0.0	-4.01	0.40	0.73	3.72	3.7	0.006	0.83	0.0	0.05	15.17	0.00	2.314	18.76	0.61	15.2	84.8	0.0	-4.68	3.41	0.35	0.68	5.07	4960	730	10	0	0	0	0	logfile
✔	8GWB	34308	2023-11-18	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.73	0.0	0.04	16.78	0.01	2.097	16.95	2.56	7.1	92.8	0.1	-1.58	1.60	0.35	0.15	0.37	21879	2655	16	54	10	7	0	logfile
✔	6oEE	20020	2023-11-19	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	8QCP	18331	2023-11-14	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.003	0.58	0.0	0.05	15.97	0.00	2.209	1.86	0.00	3.9	96.1	0.0	-2.06	3.54	0.35	0.85	5.32	7002	453	6	0	0	0	3567	logfile
✔	7YNT	33971	2023-11-13	2022-07-31	3.1	2.98	2.27	4.1	0.004	0.59	0.0	0.06	11.35	0.00	2.275	13.34	0.00	8.9	91.1	0.0	-5.55	0.42	0.70	4.17	4.1	0.003	0.65	0.0	0.06	13.89	0.00	2.253	12.32	0.00	10.7	89.3	0.0	-4.65	0.46	0.36	0.63	3.65	2364	348	6	0	0	0	0	logfile
✔	7QJX	14025	2023-11-16	2021-12-17	2.99	3.05	3.00	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.004	1.21	0.0	0.31	16.31	0.01	2.139	3.54	1.41	6.7	93.3	0.0	-3.59	3.49	0.36	0.78	3.32	13860	900	12	0	0	0	7056	logfile
✔	7U16	26279	2023-11-13	2022-02-19	2.7	3.30	—	3.5	0.004	0.62	0.0	0.06	12.93	0.00	2.310	8.58	0.00	6.8	93.2	0.0	-2.67	0.29	0.68	2.62	3.5	0.003	0.57	0.0	0.06	15.61	0.00	2.200	6.25	1.84	6.5	93.5	0.0	-2.62	1.74	0.36	0.80	5.02	3456	405	6	0	12	0	0	logfile
✔	7TMC	25995	2023-11-13	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	14.28	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.005	0.89	0.0	0.07	17.14	0.01	2.144	18.47	0.53	12.0	88.0	0.0	-4.18	1.94	0.36	0.76	3.09	3426	405	6	0	12	0	0	logfile
✔	7QKJ	14044	2023-11-14	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.005	0.79	0.0	0.05	15.54	0.00	2.135	10.82	0.25	7.9	92.1	0.0	-2.54	1.07	0.36	0.85	3.02	6888	900	12	0	0	0	0	logfile
✔	7T2E	25611	2023-11-13	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	7DA4	30622	2023-11-13	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.94	0.0	0.04	10.84	0.00	2.229	17.17	0.00	21.7	78.3	0.0	-5.61	3.07	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	7N5F	24188	2023-11-13	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7QKG	14041	2023-11-13	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.59	0.0	0.05	13.27	0.00	2.236	5.27	0.00	4.5	95.5	0.0	-1.51	1.16	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	7QJZ	14027	2023-11-13	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.44	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.5	0.004	0.78	0.0	0.05	14.64	0.00	2.193	7.85	1.54	7.9	92.1	0.0	-2.92	4.00	0.36	0.76	4.40	3378	444	6	0	0	0	0	logfile
✔	6CU7	7618	2023-11-13	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.003	0.60	0.0	0.05	13.65	0.00	2.209	12.68	0.48	13.1	86.9	0.0	-4.33	1.75	0.36	0.70	2.29	4140	600	10	0	0	0	0	logfile
✔	8JJo	36361	2023-11-13	2023-05-31	3.4	3.75	3.53	3.8	0.003	0.64	0.0	0.04	17.03	0.00	2.184	10.68	0.31	5.7	94.3	0.0	-0.11	0.40	0.71	1.06	3.8	0.003	0.54	0.0	0.04	17.92	0.00	2.198	9.53	0.62	5.1	94.6	0.3	0.97	0.38	0.36	0.72	1.41	3016	375	2	0	1	0	0	logfile
✔	7QK5	14038	2023-11-15	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.63	0.0	0.05	18.16	0.01	2.237	3.82	1.88	3.9	96.1	0.0	-1.69	1.47	0.36	0.82	7.53	10485	666	18	0	36	0	5337	logfile

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