Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CXM	27060	2023-04-20	2022-05-21	3.21	3.69	3.21	3.6	0.003	0.50	0.0	0.03	14.84	0.00	2.093	8.38	0.06	4.1	95.9	0.0	3.68	0.56	0.87	1.34	3.5	0.003	0.53	0.0	0.03	16.26	0.00	2.108	6.36	0.15	3.9	96.1	0.0	4.62	1.14	0.58	0.89	1.41	109560	14685	55	0	0	0	0	logfile
✔	6PCR	20305	2023-04-27	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✔	7S38	24819	2023-04-23	2021-09-04	3.3	3.17	3.25	3.1	0.008	0.99	0.0	0.05	15.52	0.01	2.233	2.62	0.08	4.2	95.8	0.0	-1.38	0.86	0.83	3.03	3.1	0.002	0.52	0.0	0.03	17.38	0.00	2.095	8.30	0.00	2.5	97.5	0.0	0.46	1.31	0.88	0.87	2.70	13987	1353	4	138	1	0	0	logfile
✔	7N0K	24107	2023-04-20	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.61	0.0	0.03	19.19	0.00	2.266	8.55	0.93	2.3	97.7	0.0	3.43	0.71	0.60	0.75	0.87	5154	626	2	0	0	0	0	logfile
✔	7LPC	23476	2023-04-23	2021-02-11	3.06	2.87	2.85	3.1	0.013	1.23	0.0	0.21	20.11	0.00	2.188	5.69	0.00	2.0	98.0	0.0	0.83	0.64	0.80	2.87	3.1	0.002	0.44	0.0	0.03	14.73	0.00	2.212	6.03	0.07	2.4	97.6	0.0	2.33	0.57	0.66	0.84	2.71	15256	1816	8	0	40	0	0	logfile
✔	6TYi	20583	2023-04-21	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	15.89	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.003	0.54	0.0	0.03	17.18	0.00	2.214	6.38	0.32	2.6	97.4	0.0	3.07	1.18	0.61	0.77	1.34	9184	1186	11	0	4	0	0	logfile
✔	6MRW	9214	2023-04-22	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.002	0.48	0.0	0.03	11.78	0.00	2.084	7.07	0.00	1.9	98.1	0.0	6.00	1.27	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	7WLR	32591	2023-04-22	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.42	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.004	0.56	0.0	0.03	28.58	0.00	2.194	6.62	0.16	2.4	97.6	0.0	2.98	1.22	0.78	0.83	2.36	11922	754	10	290	0	0	0	logfile
✔	6E0P	8949	2023-04-23	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.61	0.0	0.03	26.81	0.00	2.163	7.99	1.17	4.0	96.0	0.0	1.43	0.51	0.79	0.87	3.29	15567	1220	12	290	0	0	0	logfile
✔	6NoG	0468	2023-04-25	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	6S01	10069	2023-04-22	2019-06-13	3.2	3.27	3.17	3.2	0.008	0.72	0.0	0.04	26.34	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.74	0.77	3.18	3.2	0.004	0.60	0.0	0.03	27.91	0.00	2.124	8.90	0.70	3.4	96.6	0.0	0.78	0.51	0.82	0.85	2.78	12959	853	11	300	0	0	0	logfile
✔	7QA8	13880	2023-04-20	2021-11-16	2.7	2.20	2.66	2.7	0.009	1.11	0.0	0.06	14.61	0.01	2.323	1.73	0.75	3.3	96.7	0.0	-2.98	0.59	0.79	2.15	2.5	0.002	0.61	0.0	0.03	16.34	0.00	2.228	4.64	3.55	3.3	96.7	0.0	2.93	0.41	0.59	0.80	2.30	6111	622	11	0	38	70	0	logfile
✔	7RZR	24775	2023-04-19	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7WAY	32389	2023-04-22	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	16.63	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.55	0.0	0.03	17.63	0.00	2.212	5.59	1.31	2.1	97.9	0.0	1.76	0.33	0.89	0.88	2.37	11453	960	4	175	0	0	0	logfile
✔	6WCC	21606	2023-04-22	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.004	0.54	0.0	0.03	15.79	0.00	2.165	7.14	0.32	2.8	97.2	0.0	3.98	1.30	0.51	0.78	1.96	11629	734	6	0	5	12	5908	logfile
✔	7RZT	24777	2023-04-19	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	8ATF	15647	2023-04-23	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	24.98	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.88	0.00	2.235	6.93	0.00	1.8	98.2	0.0	1.86	2.25	0.78	0.85	1.65	15719	1219	13	286	1	0	0	logfile
✔	7TAN	25777	2023-04-22	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.51	0.0	0.03	27.86	0.00	2.221	2.61	0.78	2.0	98.0	0.0	2.33	0.33	0.83	0.87	2.17	12119	768	12	294	0	0	0	logfile
✔	6ZHY	11221	2023-04-21	2020-06-24	3.0	3.57	2.97	3.1	0.005	0.91	0.0	0.06	27.29	0.01	2.316	3.82	0.21	1.5	98.5	0.0	0.65	0.90	0.87	4.24	3.1	0.005	0.62	0.0	0.03	28.96	0.00	2.141	8.33	2.56	1.5	98.5	0.0	3.34	0.59	0.91	0.90	3.14	8999	562	9	220	0	0	0	logfile
✔	8E4o	27894	2023-04-19	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile

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