Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oFF	20044	2023-09-30	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.002	0.53	0.0	0.03	15.58	0.00	2.230	6.89	0.25	3.8	96.2	0.0	4.04	1.22	0.62	0.88	3.84	11016	1404	18	0	0	0	0	logfile
✔	7T6D	25713	2023-09-28	2021-12-13	3.9	4.12	3.81	4.1	0.006	0.84	2.0	0.05	13.08	0.02	2.172	12.57	1.42	2.9	97.0	0.1	1.14	0.54	0.61	0.72	4.1	0.003	0.58	0.0	0.03	14.51	0.00	2.240	7.32	0.71	2.4	97.6	0.0	2.81	0.66	0.61	0.70	0.72	7566	1181	6	0	2	0	0	logfile
✔	7N3P	24143	2023-09-29	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	18.98	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.002	0.55	0.0	0.03	19.60	0.00	2.172	12.01	0.54	2.0	98.0	0.0	1.72	0.44	0.78	0.81	2.84	9055	454	4	259	0	0	0	logfile
✔	7RU6	24698	2023-09-28	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.002	0.50	0.0	0.03	13.30	0.00	2.118	7.19	0.34	1.9	98.1	0.0	4.08	0.78	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	7QPC	14117	2023-09-30	2022-01-03	3.44	3.64	3.38	3.7	0.003	1.07	0.0	0.04	14.77	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.54	0.0	0.03	15.30	0.00	2.115	7.87	0.00	3.1	96.9	0.0	1.53	0.28	0.58	0.80	1.35	10830	654	6	0	4	62	5540	logfile
✔	8THU	41272	2023-09-30	2023-07-18	3.1	3.86	3.08	3.2	0.004	0.68	0.0	0.04	28.74	0.01	1.528	5.35	0.00	2.2	97.8	0.0	1.40	0.93	0.89	2.77	3.2	0.004	0.57	0.0	0.03	28.76	0.00	2.179	8.06	0.49	2.6	97.4	0.0	2.67	0.27	0.94	0.90	1.87	11902	760	10	291	0	0	0	logfile
✔	7F6V	31482	2023-09-28	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	14.14	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.65	0.0	0.03	17.58	0.00	2.249	9.40	0.18	4.4	95.6	0.0	4.28	0.84	0.60	0.77	0.75	5314	626	4	0	2	0	0	logfile
✔	7UTN	26782	2023-09-28	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.002	0.52	0.0	0.03	18.32	0.00	2.194	7.85	0.58	1.5	98.5	0.0	1.03	0.32	0.82	0.84	3.64	8003	397	4	228	0	0	0	logfile
✔	7CR1	30444	2023-09-28	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.53	0.0	0.03	16.48	0.00	2.133	7.37	0.60	2.2	97.8	0.0	2.94	1.18	0.58	0.81	1.83	8220	1000	8	0	4	0	0	logfile
✔	7CR0	30443	2023-09-28	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.59	0.0	0.03	15.47	0.00	2.219	7.51	0.12	3.4	96.6	0.0	2.81	0.56	0.57	0.81	2.63	8188	1004	4	0	0	0	0	logfile
✔	7NL0	12453	2023-09-30	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.003	0.60	0.0	0.03	29.96	0.00	2.230	10.86	0.48	2.6	97.4	0.0	2.41	0.26	0.77	0.81	2.77	11363	755	10	262	0	0	0	logfile
✔	6VPS	21316	2023-09-27	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.003	0.51	0.0	0.03	20.10	0.00	2.351	3.30	1.31	6.9	93.1	0.0	-3.83	1.19	0.47	0.87	6.39	2736	279	9	0	0	0	0	logfile
✔	5LMQ	4076	2023-09-28	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.84	0.02	1.387	19.43	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.003	0.72	0.0	0.03	16.43	0.01	1.903	23.92	0.05	7.4	92.2	0.5	-1.12	1.62	0.84	0.84	—	55841	2635	29	1612	66	0	0	logfile
✔	7PMW	13542	2023-09-30	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.003	0.56	0.0	0.04	11.57	0.00	2.051	9.95	0.00	3.0	97.0	0.0	0.81	1.20	0.58	0.76	—	10153	643	2	0	0	0	5123	logfile
✔	7VEA	31944	2023-09-29	2021-09-08	3.7	3.55	—	3.5	0.009	1.13	0.0	0.04	13.48	0.00	2.098	6.48	0.58	1.5	98.4	0.0	2.51	0.65	0.78	1.44	3.5	0.004	0.77	0.0	0.04	16.55	0.00	2.063	15.67	0.57	2.2	97.7	0.0	2.25	1.43	0.69	0.77	1.04	111542	15594	165	0	84	0	0	logfile
✔	7FiM	31603	2023-09-29	2021-07-31	3.4	3.76	—	3.8	0.004	0.83	0.0	0.05	13.92	0.01	2.226	7.19	0.41	2.3	97.7	0.0	-2.72	0.56	0.64	1.94	3.8	0.003	0.63	0.0	0.04	16.32	0.00	2.169	9.17	0.81	2.9	97.1	0.0	-0.65	0.85	0.70	0.81	1.23	9213	1157	6	0	0	0	0	logfile
✔	8DY7	27777	2023-09-30	2022-08-03	3.18	3.44	3.26	3.4	0.003	0.65	0.0	0.04	17.36	0.00	1.507	3.64	0.00	4.3	95.7	0.0	0.22	0.71	0.81	2.62	3.4	0.004	0.64	0.0	0.04	18.37	0.00	1.932	5.03	0.13	5.3	94.7	0.0	0.10	0.29	0.72	0.84	2.35	61085	3612	14	149	5	0	29915	logfile
✔	7X7R	33046	2023-09-30	2022-03-10	3.5	4.18	3.46	4.1	0.002	0.58	0.0	0.04	16.46	0.00	2.058	11.61	0.00	7.7	92.3	0.0	-1.19	0.71	0.68	1.20	4.1	0.003	0.65	0.0	0.04	18.04	0.00	2.015	14.33	0.33	9.0	91.0	0.0	-1.21	1.03	0.66	0.65	0.99	10529	1237	3	56	4	0	0	logfile
✔	6SZ9	10350	2023-09-30	2019-10-02	3.7	4.00	3.73	3.9	0.005	0.82	0.0	0.05	15.57	0.01	2.293	6.37	0.27	3.2	96.8	0.0	-3.82	0.77	0.79	1.44	3.9	0.003	0.65	0.0	0.04	16.73	0.00	2.149	11.04	0.27	3.8	96.2	0.0	-0.20	0.56	0.77	0.79	1.10	10233	1290	6	0	1	0	0	logfile
✔	7Uo0	26636	2023-09-30	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	24.66	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.81	0.0	0.04	26.37	0.01	2.073	21.62	1.02	9.1	90.9	0.0	-3.24	4.74	0.83	0.62	1.06	10697	112	4	455	7	0	0	logfile

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