Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SWW	25487	2023-04-20	2021-11-21	3.13	2.34	—	2.0	0.004	0.76	0.0	0.06	14.28	0.01	2.214	9.55	0.00	2.4	97.6	0.0	-0.48	0.58	0.70	2.57	2.0	0.004	0.66	0.0	0.05	15.50	0.00	2.095	10.89	0.89	4.6	95.4	0.0	-0.66	0.51	0.58	0.71	2.16	4172	511	6	0	8	0	0	logfile
✔	8DRE	27676	2023-04-27	2022-07-20	3.18	2.53	3.25	2.0	0.006	0.80	0.0	0.05	18.17	0.01	2.216	8.37	0.25	3.5	96.5	0.0	-0.71	0.73	0.76	1.15	2.0	0.003	0.54	0.0	0.04	16.68	0.00	2.182	11.13	0.28	3.1	96.9	0.0	0.25	0.43	0.73	0.78	1.33	25940	3069	18	0	20	6	0	logfile
✔	7Q2X	13783	2023-04-24	2021-10-26	3.0	2.22	—	2.1	0.002	0.55	0.0	0.04	17.41	0.00	2.035	7.69	0.11	2.6	97.4	0.0	2.57	0.74	0.70	1.84	2.0	0.003	0.69	0.0	0.04	20.45	0.00	1.906	10.04	2.31	3.4	96.6	0.0	1.78	1.28	0.77	0.79	2.17	18240	2098	8	72	6	0	0	logfile
✔	7N1W	24125	2023-04-27	2021-05-28	3.33	2.63	—	2.0	0.014	1.79	17.0	0.12	13.61	0.01	1.951	6.11	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	2.0	0.003	0.73	0.0	0.05	15.68	0.00	2.102	11.00	0.32	4.4	95.6	0.0	-0.08	1.57	0.84	0.81	2.31	26810	3257	35	0	95	0	0	logfile
✔	8DPF	27633	2023-04-20	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	10.32	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.65	0.0	0.04	14.15	0.00	2.155	4.34	1.46	3.2	96.8	0.0	0.70	1.02	0.80	0.80	3.07	8160	1093	6	0	2	0	0	logfile
✔	8AG3	15414	2023-04-19	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	2.0	0.003	0.64	0.0	0.05	17.42	0.00	2.092	9.28	1.95	7.5	92.5	0.0	-1.11	0.33	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	7TMW	26003	2023-04-20	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	2.0	0.004	0.65	0.0	0.04	15.85	0.00	2.125	15.17	0.63	3.8	96.2	0.0	0.29	0.52	0.73	0.68	0.81	7320	930	4	0	0	0	0	logfile
✔	7MiJ	23853	2023-04-26	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.51	0.0	0.04	18.05	0.00	2.213	4.43	0.92	2.6	97.4	0.0	1.38	1.08	0.75	0.80	4.57	23010	2556	12	0	38	328	0	logfile
✔	7Xo9	33341	2023-04-20	2022-05-01	3.0	2.26	3.23	3.1	0.002	0.47	0.0	0.06	13.17	0.01	2.059	3.31	0.00	2.0	98.0	0.0	-1.79	0.74	0.73	2.69	2.0	0.003	0.64	0.0	0.04	17.46	0.00	2.129	9.86	1.87	2.8	97.2	0.0	0.54	0.65	0.76	0.79	2.77	6483	793	2	0	5	0	0	logfile
✔	7EZM	31389	2023-04-21	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.64	0.0	0.04	16.19	0.00	2.114	10.06	2.51	2.3	97.7	0.0	0.47	0.62	0.78	0.80	2.89	9008	1171	6	0	0	0	0	logfile
✔	7TiK	25912	2023-04-19	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	7XoA	33342	2023-04-29	2022-05-01	3.2	2.32	3.20	2.1	0.003	0.56	0.0	0.04	8.93	0.01	1.863	8.79	0.06	2.8	97.2	0.1	-2.65	0.59	0.48	1.63	2.0	0.003	0.69	0.0	0.05	14.30	0.00	2.149	9.71	0.44	4.3	95.7	0.0	-0.98	0.83	0.73	0.77	2.59	29202	3670	8	0	35	0	0	logfile
✔	7RQS	24635	2023-04-20	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.64	0.0	0.04	15.66	0.00	1.984	11.67	0.26	8.9	91.0	0.1	-1.05	0.58	0.71	0.69	2.23	7792	1074	1	0	1	0	0	logfile
✔	7TJQ	25929	2023-04-29	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.007	0.72	0.0	0.05	15.36	0.00	2.157	9.61	0.40	3.3	96.7	0.0	-0.33	0.94	0.75	0.79	3.15	20538	2679	21	0	12	0	0	logfile
✔	7VDA	31912	2023-04-26	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	7WP9	32679	2023-04-27	2022-01-23	2.56	2.20	—	1.9	0.004	0.78	1.0	0.05	14.32	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.66	0.0	0.05	16.46	0.00	2.108	9.33	2.25	5.2	94.8	0.0	-1.50	1.01	0.76	0.81	2.44	25077	3141	13	0	28	0	0	logfile
✔	7TYV	26195	2023-04-24	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.71	0.0	0.05	13.45	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.002	0.61	0.0	0.04	16.09	0.00	2.103	6.71	2.29	4.1	95.9	0.0	-0.13	0.33	0.77	0.76	2.18	17306	2114	30	0	58	0	0	logfile
✔	8E96	27957	2023-04-26	2022-08-26	3.38	2.51	—	2.0	0.003	0.55	0.0	0.04	14.29	0.00	2.149	8.15	0.00	6.5	93.4	0.1	-1.58	0.78	0.75	2.05	2.0	0.005	0.65	0.0	0.05	15.67	0.00	2.120	9.17	0.22	7.3	92.5	0.1	-1.28	0.92	0.79	0.77	1.58	21924	2838	8	0	6	0	0	logfile
✔	7RZQ	24774	2023-04-19	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.31	0.0	0.03	15.07	0.00	2.343	5.71	0.00	0.0	100.0	0.0	5.84	0.30	0.82	0.82	2.01	2421	322	6	0	0	0	0	logfile
✔	7NJN	12392	2023-04-27	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.52	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.004	0.51	0.0	0.04	15.78	0.00	1.716	6.68	0.55	2.4	97.6	0.1	1.57	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile

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