Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XWo	33497	2023-09-29	2022-05-26	2.7	2.15	2.94	1.9	0.007	0.87	0.0	0.06	13.89	0.01	2.275	4.65	0.22	5.7	94.3	0.0	-4.88	0.76	0.76	3.57	2.0	0.002	0.64	0.0	0.04	15.98	0.00	2.057	10.75	3.16	3.0	97.0	0.0	-0.86	0.46	0.77	0.78	2.53	8725	1131	6	0	0	0	0	logfile
✔	7SRR	25402	2023-09-30	2021-11-08	2.9	2.20	—	2.0	0.005	0.67	0.0	0.05	12.52	0.00	2.196	3.95	0.12	3.4	96.6	0.0	0.15	0.80	0.78	3.23	2.0	0.003	0.56	0.0	0.04	15.03	0.00	2.189	4.32	1.41	3.2	96.8	0.0	0.79	0.32	0.82	0.82	2.78	8394	1119	5	0	1	0	0	logfile
✔	8GKH	40184	2023-09-28	2023-03-19	2.7	2.25	2.72	2.0	0.002	1.27	0.0	0.10	19.76	0.00	1.881	5.49	0.00	1.2	98.8	0.0	3.05	0.74	0.70	2.48	2.0	0.004	0.66	0.0	0.04	20.20	0.01	1.856	11.98	0.55	1.7	98.3	0.0	0.65	0.57	0.76	0.74	1.93	7570	600	7	125	3	3	0	logfile
✔	7EiB	31145	2023-09-28	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.65	0.0	0.04	16.05	0.00	2.132	10.34	2.02	2.4	97.6	0.0	1.21	1.20	0.74	0.77	1.90	7204	928	5	0	0	0	0	logfile
✔	7EQ1	31254	2023-09-29	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.003	0.60	0.0	0.04	15.98	0.00	2.091	10.97	0.41	6.0	94.0	0.0	-0.11	0.31	0.75	0.77	2.68	8999	1150	5	0	0	0	0	logfile
✔	8HGP	34745	2023-09-29	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	7RZU	24778	2023-09-27	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	7EZM	31389	2023-09-29	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.64	0.0	0.04	16.19	0.00	2.114	10.06	2.51	2.3	97.7	0.0	0.47	0.62	0.78	0.80	2.89	9008	1171	6	0	0	0	0	logfile
✔	8Q27	18070	2023-09-28	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.002	0.54	0.0	0.05	17.00	0.00	2.208	1.57	0.51	2.5	97.5	0.0	-1.37	1.20	0.34	0.88	7.21	7002	453	6	0	0	0	3567	logfile
✔	7RZR	24775	2023-09-27	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	8AFE	15395	2023-09-28	2022-07-17	3.3	2.35	3.31	2.0	0.006	0.70	0.0	0.04	14.17	0.00	2.161	14.08	0.00	4.9	95.1	0.0	-1.30	0.59	0.64	1.83	2.0	0.005	0.62	0.0	0.04	16.03	0.00	2.225	12.15	0.14	4.2	95.8	0.0	0.91	0.39	0.62	0.69	1.11	6785	880	10	0	0	0	0	logfile
✔	8P5X	17456	2023-09-28	2023-05-24	2.29	2.20	2.36	1.9	0.013	1.76	0.0	0.09	14.15	0.00	2.250	0.66	0.21	3.1	96.9	0.0	-1.93	0.89	0.90	4.98	2.0	0.003	0.54	0.0	0.04	16.33	0.00	2.003	2.59	0.51	2.1	97.9	0.0	0.77	0.42	0.87	0.88	4.28	55346	7110	18	0	12	0	0	logfile
✔	7V6A	31740	2023-09-30	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	13.93	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.004	0.73	0.0	0.04	16.34	0.00	2.079	14.99	0.89	4.5	95.5	0.0	-1.13	0.48	0.71	0.70	2.02	8584	1122	5	0	1	0	0	logfile
✔	7S8M	24897	2023-09-29	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.57	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.57	0.0	0.04	14.98	0.00	2.210	6.76	2.06	4.1	95.9	0.0	1.26	0.32	0.81	0.83	3.81	8346	1102	6	0	0	0	0	logfile
✔	8HA0	34585	2023-09-29	2022-10-26	2.62	2.14	2.52	2.0	0.005	0.78	2.0	0.05	13.83	0.01	1.689	11.43	4.53	2.2	97.2	0.6	-0.68	0.76	0.78	2.69	2.0	0.005	0.62	0.0	0.04	16.38	0.01	2.191	6.20	2.82	3.3	96.4	0.4	0.99	1.31	0.79	0.83	3.88	9385	1155	6	0	7	0	0	logfile
✔	7Xo6	33338	2023-09-28	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.25	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.003	0.59	0.0	0.04	17.39	0.00	2.114	8.50	1.90	1.9	98.1	0.0	0.74	1.56	0.78	0.81	3.00	6440	786	5	0	5	0	0	logfile
✔	7T6U	25728	2023-09-29	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.004	0.66	0.0	0.04	16.06	0.00	2.121	9.58	2.24	2.2	97.8	0.0	0.27	1.20	0.79	0.81	3.37	9033	1152	6	0	2	0	0	logfile
✔	7F9Y	31500	2023-09-30	2021-07-05	2.9	2.26	—	2.2	0.003	0.55	0.0	0.04	12.32	0.00	1.951	5.33	0.00	1.2	98.8	0.0	1.79	0.73	0.74	2.95	2.0	0.003	0.58	0.0	0.04	15.93	0.00	2.207	6.28	1.32	2.1	97.9	0.0	0.88	0.50	0.76	0.79	2.94	8354	1051	8	0	3	0	0	logfile
✔	8P2D	17361	2023-09-29	2023-05-15	2.59	2.21	2.59	2.0	0.002	0.51	0.0	0.04	12.08	0.00	1.968	10.26	4.79	8.1	91.9	0.0	-1.58	0.71	0.64	2.46	2.0	0.003	0.64	0.0	0.04	15.97	0.00	1.990	14.01	2.34	7.8	92.2	0.0	-0.98	1.30	0.73	0.67	2.03	8793	1087	4	0	4	0	0	logfile
✔	8CZi	27098	2023-09-27	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.39	0.0	0.03	15.18	0.00	2.140	5.65	0.34	0.0	100.0	0.0	5.55	0.85	0.83	0.84	1.84	2550	339	6	0	0	0	0	logfile

• ← previous
• Page 6 of 206
• next →