Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S37	24818	2023-02-19	2021-09-04	3.2	3.10	3.27	2.3	0.006	1.04	0.0	0.05	12.76	0.01	2.211	4.66	0.11	3.7	96.3	0.0	-1.48	0.74	0.62	0.31	2.2	0.003	0.70	0.0	0.04	16.14	0.01	2.116	15.43	0.54	3.3	96.7	0.0	0.14	1.48	0.77	0.67	0.49	9392	1033	2	46	0	0	0	logfile
✔	7F5V	31468	2023-02-23	2021-06-22	3.6	4.00	3.42	3.9	0.005	0.69	0.0	0.04	13.93	0.00	2.076	16.85	0.18	6.9	93.0	0.1	-4.69	0.75	0.80	1.04	3.9	0.005	0.72	0.0	0.04	15.92	0.00	2.060	17.19	0.27	7.0	93.0	0.0	-1.42	1.22	0.74	0.79	0.49	20912	2760	4	0	0	0	0	logfile
✔	6ZiT	11229	2023-02-23	2020-06-26	3.49	3.68	4.20	3.5	0.005	0.74	0.0	0.04	15.19	0.01	1.968	23.60	0.00	10.6	89.4	0.0	-1.92	0.49	0.72	0.69	3.5	0.003	0.60	0.0	0.04	16.48	0.00	1.970	12.86	0.28	5.1	94.9	0.0	0.40	0.55	0.49	0.72	0.49	20646	1300	15	0	0	0	10446	logfile
✔	7T5P	25706	2023-02-20	2021-12-13	3.4	3.23	3.35	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.23	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.003	0.60	0.0	0.04	17.97	0.00	1.945	15.97	0.52	5.4	94.6	0.0	1.62	0.38	0.77	0.74	0.50	13597	822	2	0	0	0	6866	logfile
✔	7XDT	33152	2023-02-23	2022-03-28	3.31	3.64	3.32	3.5	0.003	0.61	0.0	0.04	17.78	0.01	2.081	11.26	0.23	5.2	94.8	0.0	-0.03	0.72	0.65	0.76	3.5	0.003	0.62	0.0	0.04	18.54	0.00	2.052	12.79	0.54	5.4	94.6	0.0	0.47	0.55	0.76	0.70	0.50	41990	5310	10	0	0	0	0	logfile
✔	6UZ3	20951	2023-02-19	2019-11-14	3.5	3.88	—	3.8	0.022	1.32	3.0	0.15	17.52	0.01	1.260	32.32	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.004	0.85	0.0	0.05	17.36	0.00	2.143	17.98	0.84	7.1	92.7	0.2	-0.49	0.69	0.42	0.69	0.51	9446	1126	5	0	25	0	0	logfile
✔	6NoG	0468	2023-02-23	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	6Qi8	4552	2023-02-21	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	7S1Y	24812	2023-02-17	2021-09-02	3.6	3.90	—	3.9	0.005	0.77	2.0	0.04	12.89	0.01	1.566	12.97	0.00	7.2	92.6	0.2	-0.33	0.40	0.55	0.33	3.9	0.003	0.72	2.0	0.04	14.86	0.00	2.189	13.61	0.52	6.9	92.9	0.2	-0.45	0.58	0.51	0.64	0.51	6580	948	4	0	6	0	0	logfile
✔	7K8V	22732	2023-02-25	2020-09-27	3.8	4.64	—	4.0	0.003	0.59	0.0	0.07	12.91	0.00	2.005	11.42	0.15	4.8	95.1	0.2	-2.90	0.81	0.74	0.42	4.1	0.004	0.69	0.0	0.04	14.71	0.00	2.118	18.31	0.48	6.1	93.8	0.1	-1.45	0.78	0.83	0.80	0.52	26248	3390	20	0	41	0	0	logfile
✔	7WV9	32850	2023-02-18	2022-02-10	3.36	3.51	—	3.6	0.005	0.77	0.0	0.05	13.78	0.00	2.206	11.90	0.53	5.0	94.9	0.1	-0.80	0.57	0.67	1.09	3.6	0.002	0.60	0.0	0.04	15.49	0.00	2.234	12.58	0.32	4.6	95.4	0.0	-0.65	0.94	0.59	0.71	0.52	8848	1141	6	0	2	0	0	logfile
✔	6QB8	4489	2023-02-23	2018-12-20	3.97	4.19	—	2.3	0.005	0.96	0.0	0.06	15.67	0.01	2.238	11.60	0.76	8.2	91.8	0.0	-4.47	0.89	0.77	0.40	2.1	0.004	0.79	0.0	0.05	16.49	0.00	2.037	28.19	0.27	9.0	91.0	0.0	-1.64	1.54	0.89	0.80	0.52	60035	7870	18	0	2	0	0	logfile
✔	7USY	26743	2023-02-22	2022-04-26	3.54	3.90	3.64	3.9	0.004	0.78	0.0	0.04	16.46	0.01	1.415	8.72	0.28	3.0	97.0	0.0	1.55	0.56	0.69	0.66	3.8	0.003	0.54	0.0	0.04	16.79	0.00	2.197	7.85	0.34	2.8	97.2	0.0	1.72	0.42	0.54	0.64	0.53	16582	2025	13	0	16	0	0	logfile
✔	6W8P	21577	2023-02-17	2020-03-21	3.6	4.05	—	4.0	0.004	0.76	0.0	0.04	18.04	0.00	2.236	14.92	10.89	10.4	89.6	0.0	-3.47	0.57	0.80	0.57	4.0	0.004	0.80	0.0	0.04	17.40	0.00	2.216	14.38	0.86	9.4	90.6	0.0	-0.22	2.10	0.57	0.78	0.53	6509	844	4	0	3	0	0	logfile
✔	7BW8	30230	2023-02-17	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.23	0.01	2.200	21.41	0.88	10.6	89.4	0.0	-3.01	2.07	0.68	0.63	0.53	6021	737	3	0	0	0	0	logfile
✔	7S8U	24922	2023-02-17	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.004	0.86	0.0	0.05	16.32	0.01	2.069	18.36	0.88	9.6	89.9	0.5	-0.50	1.41	0.51	0.62	0.54	5210	667	1	0	0	0	0	logfile
✔	6LAR	0862	2023-02-24	2019-11-13	3.7	4.08	—	4.0	0.007	0.99	0.0	0.05	15.43	0.01	1.858	20.21	5.47	13.2	86.4	0.4	-4.82	0.65	0.76	0.98	4.0	0.003	0.78	0.0	0.04	15.86	0.00	2.160	12.49	0.43	8.6	91.4	0.0	-0.58	1.21	0.64	0.76	0.54	22448	3020	10	0	0	0	0	logfile
✔	6WFQ	21652	2023-02-17	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.003	0.92	0.0	0.04	19.12	0.00	2.154	16.10	0.00	6.3	93.7	0.0	-0.17	0.73	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	7KVF	23049	2023-02-20	2020-11-28	3.6	4.39	3.76	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.23	0.57	18.2	81.4	0.4	-5.88	0.82	0.66	1.37	3.6	0.003	0.80	0.0	0.05	16.13	0.00	2.157	16.77	0.00	11.9	88.1	0.0	-3.74	2.39	0.87	0.76	0.54	11142	1374	1	0	0	0	0	logfile
✔	8EFD	28080	2023-02-18	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.61	0.0	0.04	15.94	0.00	2.165	13.04	0.26	4.5	95.5	0.0	0.71	0.55	0.88	0.80	0.54	7107	886	2	0	0	0	0	logfile

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