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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8FN6 | 29306 | 2024-03-18 | 2022-12-27 | 3.7 | 3.97 | 3.74 | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 17.58 | 0.00 | 2.196 | 11.03 | 0.60 | 6.0 | 93.9 | 0.0 | -0.22 | 0.75 | 0.75 | 0.14 | 3.9 | 0.002 | 0.60 | 0.0 | 0.04 | 17.78 | 0.00 | 2.120 | 10.33 | 3.69 | 6.2 | 93.8 | 0.0 | 0.06 | 0.37 | 0.76 | 0.76 | 0.27 | 22421 | 2729 | 8 | 46 | 1 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2024-03-14 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.46 | 0.00 | 2.181 | 8.86 | 5.51 | 0.4 | 99.6 | 0.0 | 3.23 | 1.98 | 0.81 | 0.79 | 0.27 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 6MDo | 9102 | 2024-03-25 | 2018-09-04 | 3.9 | 5.46 | — | 4.2 | 0.015 | 1.44 | 0.0 | 0.12 | 14.30 | 0.01 | 2.012 | 6.72 | 0.16 | 0.3 | 99.6 | 0.0 | -3.28 | 0.79 | 0.68 | 0.38 | 4.2 | 0.004 | 0.68 | 0.0 | 0.08 | 14.32 | 0.00 | 1.782 | 17.49 | 0.87 | 7.1 | 92.9 | 0.0 | -1.22 | 1.53 | 0.87 | 0.84 | 0.27 | 45373 | 2843 | 13 | 0 | 11 | 0 | 22858 | logfile |
✔ | 7K8A | 22724 | 2024-03-15 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.004 | 0.82 | 0.0 | 0.04 | 15.98 | 0.01 | 2.180 | 17.79 | 5.44 | 5.7 | 94.2 | 0.1 | -0.95 | 0.44 | 0.43 | 0.57 | 0.27 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DGi | 27423 | 2024-03-16 | 2022-06-23 | 3.94 | 4.27 | 4.04 | 4.1 | 0.005 | 1.16 | 4.0 | 0.06 | 15.93 | 0.01 | 2.263 | 8.89 | 0.67 | 5.9 | 93.8 | 0.3 | -2.32 | 0.67 | 0.52 | 0.27 | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 16.48 | 0.00 | 2.047 | 20.88 | 3.53 | 6.9 | 92.9 | 0.2 | -0.43 | 0.55 | 0.66 | 0.51 | 0.27 | 13580 | 1690 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8UoP | 42435 | 2024-03-15 | 2023-10-20 | 3.8 | 3.97 | 3.89 | 3.8 | 0.005 | 0.91 | 0.0 | 0.04 | 16.45 | 0.01 | 1.954 | 17.97 | 0.73 | 15.7 | 83.6 | 0.7 | -3.60 | 0.18 | 0.15 | 0.40 | 3.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.20 | 0.00 | 1.949 | 14.94 | 4.40 | 11.8 | 87.9 | 0.3 | -3.15 | 0.92 | 0.24 | 0.24 | 0.27 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 6U9H | 20700 | 2024-03-25 | 2019-09-08 | 3.8 | 4.00 | — | 3.9 | 0.011 | 1.26 | 0.0 | 0.07 | 16.49 | 0.01 | 2.034 | 16.92 | 0.16 | 10.2 | 89.8 | 0.0 | -4.80 | 0.83 | 0.77 | 0.81 | 3.9 | 0.004 | 0.84 | 0.0 | 0.05 | 17.25 | 0.01 | 1.929 | 28.81 | 2.36 | 6.7 | 93.3 | 0.0 | -2.78 | 1.22 | 0.82 | 0.75 | 0.27 | 46356 | 5952 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 7B6X | 12057 | 2024-03-15 | 2020-12-08 | 3.6 | 2.59 | — | 2.5 | 0.008 | 1.06 | 0.0 | 0.06 | 14.17 | 0.01 | 2.035 | 44.45 | 0.09 | 13.3 | 86.7 | 0.0 | -2.77 | 0.75 | 0.72 | 0.42 | 2.5 | 0.003 | 0.75 | 0.0 | 0.05 | 16.22 | 0.00 | 2.128 | 23.11 | 3.60 | 7.2 | 92.8 | 0.0 | -0.88 | 1.36 | 0.75 | 0.71 | 0.28 | 10470 | 1290 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AS9 | 11890 | 2024-03-19 | 2020-10-27 | 3.5 | 4.52 | 3.51 | 4.2 | 0.007 | 0.98 | 0.0 | 0.05 | 24.57 | 0.01 | 1.976 | 8.25 | 0.07 | 13.0 | 86.6 | 0.4 | -4.86 | 0.92 | 0.83 | 0.18 | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 24.64 | 0.01 | 2.041 | 30.77 | 5.50 | 11.3 | 88.6 | 0.1 | -2.62 | 0.71 | 0.92 | 0.84 | 0.28 | 93137 | 3720 | 32 | 2999 | 0 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2024-03-19 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 23.47 | 0.01 | 1.028 | 4.81 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.005 | 0.76 | 0.0 | 0.04 | 24.13 | 0.01 | 2.006 | 32.27 | 5.12 | 7.8 | 92.0 | 0.1 | -1.53 | 1.13 | 0.93 | 0.88 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 7VQ4 | 32085 | 2024-03-11 | 2021-10-19 | 3.2 | 3.54 | — | 3.6 | 0.007 | 0.74 | 0.0 | 0.04 | 16.10 | 0.00 | 2.155 | 9.59 | 2.30 | 6.6 | 93.4 | 0.0 | -1.96 | 0.61 | 0.79 | 1.10 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 17.31 | 0.00 | 2.217 | 8.02 | 4.02 | 3.9 | 96.1 | 0.0 | 3.15 | 1.27 | 0.59 | 0.78 | 0.28 | 6306 | 800 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W6P | 32331 | 2024-03-11 | 2021-12-02 | 3.47 | 3.79 | — | 9.6 | 0.004 | 0.70 | 0.0 | 0.04 | 13.78 | 0.00 | 2.196 | 14.60 | 0.11 | 7.0 | 93.0 | 0.0 | -0.94 | 0.22 | 0.11 | 0.18 | 8.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.30 | 0.00 | 2.211 | 13.58 | 2.11 | 5.7 | 94.3 | 0.0 | -0.69 | 1.89 | 0.31 | 0.25 | 0.29 | 8408 | 1083 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6RAX | 4786 | 2024-03-24 | 2019-04-08 | 3.99 | 4.07 | 3.97 | 4.1 | 0.011 | 1.46 | 27.0 | 0.13 | 18.19 | 0.01 | 1.308 | 23.93 | 6.70 | 19.2 | 80.3 | 0.5 | -5.61 | 0.55 | 0.58 | 0.25 | 4.0 | 0.005 | 0.90 | 1.0 | 0.05 | 18.58 | 0.01 | 1.957 | 18.48 | 4.22 | 12.8 | 87.2 | 0.0 | -3.18 | 1.44 | 0.57 | 0.55 | 0.29 | 40970 | 5062 | 19 | 29 | 6 | 0 | 0 | logfile |
✔ | 8UoY | 42441 | 2024-03-15 | 2023-10-20 | 3.4 | 3.52 | 3.51 | 3.4 | 0.016 | 2.25 | 10.0 | 0.11 | 17.12 | 0.02 | 2.532 | 0.83 | 6.89 | 12.1 | 85.3 | 2.6 | -3.89 | 0.21 | 0.24 | 0.07 | 3.4 | 0.003 | 0.74 | 0.0 | 0.04 | 17.69 | 0.00 | 1.889 | 17.22 | 4.99 | 9.2 | 90.7 | 0.1 | -3.33 | 0.86 | 0.22 | 0.25 | 0.30 | 13188 | 872 | 2 | 0 | 0 | 0 | 6544 | logfile |
✔ | 8AKS | 15491 | 2024-03-10 | 2022-07-31 | 3.9 | 4.35 | 4.16 | 4.2 | 0.003 | 0.59 | 0.0 | 0.03 | 13.89 | 0.00 | 1.976 | 3.70 | 0.00 | 0.5 | 99.5 | 0.0 | 3.46 | 0.85 | 0.79 | 0.58 | 4.1 | 0.003 | 0.60 | 0.0 | 0.03 | 15.24 | 0.00 | 1.836 | 34.61 | 1.73 | 0.8 | 99.2 | 0.0 | 4.52 | 0.70 | 0.88 | 0.83 | 0.30 | 107640 | 11760 | 120 | 0 | 60 | 0 | 11400 | logfile |
✔ | 5A8L | 3099 | 2024-03-15 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 21.13 | 0.00 | 1.435 | 8.96 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.85 | 0.0 | 0.04 | 23.10 | 0.01 | 2.082 | 20.16 | 3.98 | 11.9 | 87.3 | 0.8 | -2.35 | 1.86 | 0.23 | 0.63 | 0.31 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 7UNK | 26625 | 2024-03-16 | 2022-04-11 | 3.45 | 3.69 | 3.50 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 15.44 | 0.01 | 2.169 | 7.74 | 0.75 | 3.0 | 97.0 | 0.0 | 1.09 | 0.72 | 0.83 | 0.68 | 3.6 | 0.003 | 0.90 | 1.0 | 0.04 | 16.97 | 0.00 | 2.199 | 8.87 | 1.50 | 2.7 | 97.3 | 0.0 | 1.51 | 0.46 | 0.76 | 0.88 | 0.31 | 10992 | 1401 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q97 | 4476 | 2024-03-03 | 2018-12-17 | 3.9 | 3.69 | — | 20.0 | 0.011 | 1.20 | 0.0 | 0.16 | 24.87 | 0.02 | 1.320 | 6.99 | 0.38 | 10.1 | 89.8 | 0.1 | -5.34 | 0.15 | 0.01 | 0.22 | 3.6 | 0.005 | 0.92 | 1.0 | 0.05 | 25.72 | 0.01 | 0.951 | 21.35 | 3.55 | 10.5 | 89.5 | 0.0 | -3.27 | 2.51 | 0.27 | 0.22 | 0.31 | 156609 | 6124 | 72 | 5051 | 441 | 2 | 0 | logfile |
✔ | 8GWG | 34312 | 2024-03-18 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 18.83 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.5 | 0.005 | 0.92 | 1.0 | 0.05 | 18.74 | 0.01 | 1.641 | 23.79 | 4.08 | 7.9 | 91.9 | 0.2 | -2.18 | 1.77 | 0.76 | 0.62 | 0.32 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 7QPG | 14120 | 2024-03-11 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 6.89 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.4 | 0.002 | 0.65 | 0.0 | 0.04 | 12.90 | 0.00 | 2.133 | 10.06 | 0.97 | 2.7 | 97.3 | 0.0 | 1.29 | 0.79 | 0.88 | 0.75 | 0.32 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |