Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HSJ	34999	2023-08-15	2022-12-19	3.6	4.38	3.44	3.4	0.004	0.80	0.0	0.05	14.73	0.01	1.788	16.52	4.93	3.7	96.0	0.3	-0.81	0.82	0.68	0.35	3.9	0.004	0.81	0.0	0.04	16.44	0.01	1.074	23.89	0.99	3.5	96.2	0.3	-0.24	1.32	0.85	0.73	0.36	17244	2166	12	0	18	0	0	logfile
✔	8DFU	27414	2023-08-17	2022-06-22	3.44	3.84	3.52	3.8	0.010	0.92	0.0	1.18	24.51	0.00	2.461	3.48	0.00	1.2	98.8	0.0	1.08	0.59	0.85	1.18	3.8	0.003	0.53	0.0	0.03	20.00	0.00	2.271	5.44	0.35	2.4	97.6	0.0	4.52	1.18	0.58	0.84	0.37	22710	2520	56	0	60	0	0	logfile
✔	7o6B	12737	2023-08-13	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.002	0.56	0.0	0.04	14.10	0.00	2.026	9.46	0.13	3.6	96.4	0.0	0.66	1.15	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	3JAD	6344	2023-08-12	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	8.45	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.76	0.0	0.04	12.95	0.00	2.195	16.00	0.17	4.0	96.0	0.0	0.22	1.23	0.70	0.77	0.37	12705	1685	15	0	15	0	0	logfile
✔	7TR8	26082	2023-08-22	2022-01-28	3.6	4.39	—	4.1	0.002	0.54	0.0	0.04	14.37	0.00	2.037	11.91	0.03	7.5	92.2	0.4	-1.00	0.75	0.46	-0.02	4.1	0.003	0.85	0.0	0.05	16.82	0.01	2.069	23.21	0.26	7.9	91.8	0.3	-1.86	2.22	0.83	0.71	0.38	33581	4192	18	45	2	0	0	logfile
✔	7RTU	24689	2023-08-09	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	14.31	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.56	0.0	0.04	16.58	0.00	2.211	7.03	0.31	2.4	97.6	0.0	4.14	0.30	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	7SoY	25363	2023-08-12	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	12.96	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.003	0.64	0.0	0.04	14.33	0.00	2.076	14.51	0.22	2.4	97.6	0.0	1.48	0.49	0.91	0.85	0.39	12180	1529	4	0	0	0	0	logfile
✔	7ZPJ	14855	2023-08-17	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.1	0.004	0.69	0.0	0.04	15.40	0.01	1.881	14.65	0.75	4.9	95.1	0.0	-0.12	1.51	0.64	0.57	0.39	23479	1355	3	55	0	0	11508	logfile
✔	6W62	21551	2023-08-10	2020-03-16	3.9	4.04	—	4.0	0.003	0.64	1.0	0.04	14.23	0.00	1.883	16.29	0.00	10.2	89.4	0.3	-2.04	0.71	0.67	1.02	4.0	0.003	0.75	0.0	0.04	16.90	0.00	2.135	17.07	1.04	9.6	90.4	0.0	-1.75	1.21	0.72	0.68	0.39	7387	910	2	24	0	0	0	logfile
✔	6SXA	10337	2023-08-10	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.04	0.00	2.240	11.90	0.00	6.0	93.9	0.1	-0.30	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7WVP	32856	2023-08-20	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.004	0.82	1.0	0.05	15.92	0.00	2.060	17.53	0.61	5.2	94.8	0.0	-1.57	1.54	0.75	0.67	0.41	29601	3750	4	0	0	0	0	logfile
✔	7M18	23615	2023-08-09	2021-03-12	3.38	4.09	—	4.1	0.007	1.33	0.0	0.05	19.80	0.01	1.728	23.77	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.003	0.79	0.0	0.04	19.96	0.01	2.078	17.84	0.33	8.5	91.3	0.1	-1.88	0.55	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	8FiX	29212	2023-08-18	2022-12-17	3.9	4.15	3.95	3.9	0.003	0.69	0.0	0.05	14.21	0.00	1.933	14.02	0.07	12.8	87.1	0.2	-2.81	0.79	0.65	0.34	3.9	0.003	0.69	0.0	0.04	16.03	0.00	1.929	14.33	0.33	5.7	94.3	0.0	-0.73	2.14	0.81	0.70	0.41	25943	3185	9	49	3	0	0	logfile
✔	7CG4	30350	2023-08-12	2020-06-30	3.6	4.04	—	3.9	0.003	0.69	0.0	0.04	14.90	0.00	2.192	7.47	0.34	5.1	94.9	0.0	-2.88	0.49	0.77	0.53	4.0	0.004	0.88	0.0	0.04	17.36	0.00	2.148	10.42	0.51	5.3	94.7	0.1	1.07	1.96	0.45	0.76	0.41	10943	1419	11	0	0	0	0	logfile
✔	5LKH	4068	2023-08-24	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.12	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.79	0.0	0.04	15.60	0.00	2.128	23.73	0.29	6.5	93.5	0.0	-0.63	2.08	0.50	0.55	0.41	37345	4740	5	0	0	0	0	logfile
✔	6TQM	10555	2023-08-24	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.78	0.0	0.04	15.99	0.00	1.902	16.86	0.14	11.1	88.9	0.0	-3.64	1.33	0.39	0.26	0.42	39616	2578	6	0	4	0	19804	logfile
✔	8H0V	34415	2023-08-26	2022-09-30	3.8	4.36	3.67	3.0	0.006	0.87	0.0	0.05	21.25	0.01	1.954	10.09	0.05	3.8	96.1	0.1	-0.59	0.82	0.61	0.55	3.0	0.004	0.71	0.0	0.04	22.36	0.00	1.950	18.60	0.22	5.2	94.8	0.0	-0.01	1.75	0.82	0.67	0.42	46571	4766	30	425	9	0	0	logfile
✔	7R03	14218	2023-08-23	2022-02-01	3.6	4.69	—	3.8	0.006	1.15	1.0	0.06	13.88	0.01	2.224	5.84	0.00	4.2	95.8	0.0	-2.18	0.86	0.76	0.62	3.8	0.003	0.70	0.0	0.04	15.11	0.00	2.112	13.25	0.05	4.3	95.7	0.0	1.22	0.47	0.86	0.77	0.42	35621	4487	2	0	0	0	0	logfile
✔	6RAW	4785	2023-08-24	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.63	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.003	0.82	0.0	0.04	18.38	0.00	2.094	14.16	0.61	11.3	88.7	0.0	-2.91	3.97	0.58	0.61	0.42	39710	4877	18	39	6	0	0	logfile
✔	7LC9	23270	2023-08-09	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.003	0.67	0.0	0.05	16.66	0.00	2.060	26.52	1.18	10.8	89.2	0.0	-3.54	0.68	0.68	0.78	0.44	3497	525	12	0	0	0	0	logfile

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