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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HSJ | 34999 | 2023-08-15 | 2022-12-19 | 3.6 | 4.38 | 3.44 | 3.4 | 0.004 | 0.80 | 0.0 | 0.05 | 14.73 | 0.01 | 1.788 | 16.52 | 4.93 | 3.7 | 96.0 | 0.3 | -0.81 | 0.82 | 0.68 | 0.35 | 3.9 | 0.004 | 0.81 | 0.0 | 0.04 | 16.44 | 0.01 | 1.074 | 23.89 | 0.99 | 3.5 | 96.2 | 0.3 | -0.24 | 1.32 | 0.85 | 0.73 | 0.36 | 17244 | 2166 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8DFU | 27414 | 2023-08-17 | 2022-06-22 | 3.44 | 3.84 | 3.52 | 3.8 | 0.010 | 0.92 | 0.0 | 1.18 | 24.51 | 0.00 | 2.461 | 3.48 | 0.00 | 1.2 | 98.8 | 0.0 | 1.08 | 0.59 | 0.85 | 1.18 | 3.8 | 0.003 | 0.53 | 0.0 | 0.03 | 20.00 | 0.00 | 2.271 | 5.44 | 0.35 | 2.4 | 97.6 | 0.0 | 4.52 | 1.18 | 0.58 | 0.84 | 0.37 | 22710 | 2520 | 56 | 0 | 60 | 0 | 0 | logfile |
✔ | 7o6B | 12737 | 2023-08-13 | 2021-04-09 | 3.88 | 4.21 | 4.15 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 11.54 | 0.01 | 2.128 | 6.00 | 0.38 | 4.3 | 95.7 | 0.0 | -0.87 | 0.75 | 0.67 | 0.37 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 14.10 | 0.00 | 2.026 | 9.46 | 0.13 | 3.6 | 96.4 | 0.0 | 0.66 | 1.15 | 0.76 | 0.69 | 0.37 | 14200 | 879 | 1 | 0 | 0 | 0 | 7040 | logfile |
✔ | 3JAD | 6344 | 2023-08-12 | 2015-06-08 | 3.9 | 2.16 | — | 3.8 | 0.008 | 1.33 | 0.0 | 0.06 | 8.45 | 0.00 | 2.250 | 16.87 | 0.43 | 2.7 | 97.3 | 0.0 | -2.13 | 0.68 | 0.72 | 0.33 | 3.0 | 0.003 | 0.76 | 0.0 | 0.04 | 12.95 | 0.00 | 2.195 | 16.00 | 0.17 | 4.0 | 96.0 | 0.0 | 0.22 | 1.23 | 0.70 | 0.77 | 0.37 | 12705 | 1685 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7TR8 | 26082 | 2023-08-22 | 2022-01-28 | 3.6 | 4.39 | — | 4.1 | 0.002 | 0.54 | 0.0 | 0.04 | 14.37 | 0.00 | 2.037 | 11.91 | 0.03 | 7.5 | 92.2 | 0.4 | -1.00 | 0.75 | 0.46 | -0.02 | 4.1 | 0.003 | 0.85 | 0.0 | 0.05 | 16.82 | 0.01 | 2.069 | 23.21 | 0.26 | 7.9 | 91.8 | 0.3 | -1.86 | 2.22 | 0.83 | 0.71 | 0.38 | 33581 | 4192 | 18 | 45 | 2 | 0 | 0 | logfile |
✔ | 7RTU | 24689 | 2023-08-09 | 2021-08-15 | 3.89 | 4.06 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.31 | 0.00 | 2.175 | 7.11 | 0.16 | 3.1 | 96.9 | 0.0 | 4.32 | 0.55 | 0.69 | 0.15 | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 16.58 | 0.00 | 2.211 | 7.03 | 0.31 | 2.4 | 97.6 | 0.0 | 4.14 | 0.30 | 0.62 | 0.73 | 0.38 | 5962 | 754 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7SoY | 25363 | 2023-08-12 | 2021-11-01 | 3.4 | 4.73 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 12.63 | 0.00 | 2.231 | 12.96 | 0.37 | 1.7 | 98.3 | 0.0 | 1.32 | 0.90 | 0.83 | 0.53 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 14.33 | 0.00 | 2.076 | 14.51 | 0.22 | 2.4 | 97.6 | 0.0 | 1.48 | 0.49 | 0.91 | 0.85 | 0.39 | 12180 | 1529 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPJ | 14855 | 2023-08-17 | 2022-04-27 | 3.81 | 3.24 | 3.86 | 6.5 | 0.004 | 0.86 | 0.0 | 0.05 | 13.19 | 0.01 | 2.159 | 2.94 | 0.67 | 3.3 | 96.7 | 0.0 | 0.22 | 0.54 | 0.33 | 0.15 | 2.1 | 0.004 | 0.69 | 0.0 | 0.04 | 15.40 | 0.01 | 1.881 | 14.65 | 0.75 | 4.9 | 95.1 | 0.0 | -0.12 | 1.51 | 0.64 | 0.57 | 0.39 | 23479 | 1355 | 3 | 55 | 0 | 0 | 11508 | logfile |
✔ | 6W62 | 21551 | 2023-08-10 | 2020-03-16 | 3.9 | 4.04 | — | 4.0 | 0.003 | 0.64 | 1.0 | 0.04 | 14.23 | 0.00 | 1.883 | 16.29 | 0.00 | 10.2 | 89.4 | 0.3 | -2.04 | 0.71 | 0.67 | 1.02 | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 16.90 | 0.00 | 2.135 | 17.07 | 1.04 | 9.6 | 90.4 | 0.0 | -1.75 | 1.21 | 0.72 | 0.68 | 0.39 | 7387 | 910 | 2 | 24 | 0 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2023-08-10 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.25 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.04 | 0.00 | 2.240 | 11.90 | 0.00 | 6.0 | 93.9 | 0.1 | -0.30 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WVP | 32856 | 2023-08-20 | 2022-02-10 | 3.7 | 3.43 | — | 3.8 | 0.005 | 0.85 | 2.0 | 0.06 | 13.45 | 0.01 | 2.335 | 3.35 | 0.40 | 3.9 | 95.9 | 0.1 | -4.59 | 0.70 | 0.59 | 0.30 | 3.8 | 0.004 | 0.82 | 1.0 | 0.05 | 15.92 | 0.00 | 2.060 | 17.53 | 0.61 | 5.2 | 94.8 | 0.0 | -1.57 | 1.54 | 0.75 | 0.67 | 0.41 | 29601 | 3750 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7M18 | 23615 | 2023-08-09 | 2021-03-12 | 3.38 | 4.09 | — | 4.1 | 0.007 | 1.33 | 0.0 | 0.05 | 19.80 | 0.01 | 1.728 | 23.77 | 0.28 | 10.4 | 89.3 | 0.3 | -2.48 | 0.74 | 0.73 | 0.41 | 4.1 | 0.003 | 0.79 | 0.0 | 0.04 | 19.96 | 0.01 | 2.078 | 17.84 | 0.33 | 8.5 | 91.3 | 0.1 | -1.88 | 0.55 | 0.75 | 0.74 | 0.41 | 54064 | 6904 | 32 | 8 | 16 | 0 | 0 | logfile |
✔ | 8FiX | 29212 | 2023-08-18 | 2022-12-17 | 3.9 | 4.15 | 3.95 | 3.9 | 0.003 | 0.69 | 0.0 | 0.05 | 14.21 | 0.00 | 1.933 | 14.02 | 0.07 | 12.8 | 87.1 | 0.2 | -2.81 | 0.79 | 0.65 | 0.34 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 16.03 | 0.00 | 1.929 | 14.33 | 0.33 | 5.7 | 94.3 | 0.0 | -0.73 | 2.14 | 0.81 | 0.70 | 0.41 | 25943 | 3185 | 9 | 49 | 3 | 0 | 0 | logfile |
✔ | 7CG4 | 30350 | 2023-08-12 | 2020-06-30 | 3.6 | 4.04 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.90 | 0.00 | 2.192 | 7.47 | 0.34 | 5.1 | 94.9 | 0.0 | -2.88 | 0.49 | 0.77 | 0.53 | 4.0 | 0.004 | 0.88 | 0.0 | 0.04 | 17.36 | 0.00 | 2.148 | 10.42 | 0.51 | 5.3 | 94.7 | 0.1 | 1.07 | 1.96 | 0.45 | 0.76 | 0.41 | 10943 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2023-08-24 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.003 | 0.79 | 0.0 | 0.04 | 15.60 | 0.00 | 2.128 | 23.73 | 0.29 | 6.5 | 93.5 | 0.0 | -0.63 | 2.08 | 0.50 | 0.55 | 0.41 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TQM | 10555 | 2023-08-24 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.9 | 0.003 | 0.78 | 0.0 | 0.04 | 15.99 | 0.00 | 1.902 | 16.86 | 0.14 | 11.1 | 88.9 | 0.0 | -3.64 | 1.33 | 0.39 | 0.26 | 0.42 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 8H0V | 34415 | 2023-08-26 | 2022-09-30 | 3.8 | 4.36 | 3.67 | 3.0 | 0.006 | 0.87 | 0.0 | 0.05 | 21.25 | 0.01 | 1.954 | 10.09 | 0.05 | 3.8 | 96.1 | 0.1 | -0.59 | 0.82 | 0.61 | 0.55 | 3.0 | 0.004 | 0.71 | 0.0 | 0.04 | 22.36 | 0.00 | 1.950 | 18.60 | 0.22 | 5.2 | 94.8 | 0.0 | -0.01 | 1.75 | 0.82 | 0.67 | 0.42 | 46571 | 4766 | 30 | 425 | 9 | 0 | 0 | logfile |
✔ | 7R03 | 14218 | 2023-08-23 | 2022-02-01 | 3.6 | 4.69 | — | 3.8 | 0.006 | 1.15 | 1.0 | 0.06 | 13.88 | 0.01 | 2.224 | 5.84 | 0.00 | 4.2 | 95.8 | 0.0 | -2.18 | 0.86 | 0.76 | 0.62 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.11 | 0.00 | 2.112 | 13.25 | 0.05 | 4.3 | 95.7 | 0.0 | 1.22 | 0.47 | 0.86 | 0.77 | 0.42 | 35621 | 4487 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAW | 4785 | 2023-08-24 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.63 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | 3.8 | 0.003 | 0.82 | 0.0 | 0.04 | 18.38 | 0.00 | 2.094 | 14.16 | 0.61 | 11.3 | 88.7 | 0.0 | -2.91 | 3.97 | 0.58 | 0.61 | 0.42 | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |
✔ | 7LC9 | 23270 | 2023-08-09 | 2021-01-10 | 3.2 | 3.25 | — | 3.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.46 | 0.00 | 1.884 | 31.60 | 18.58 | 13.4 | 86.6 | 0.0 | -4.15 | 0.71 | 0.77 | -0.84 | 3.1 | 0.003 | 0.67 | 0.0 | 0.05 | 16.66 | 0.00 | 2.060 | 26.52 | 1.18 | 10.8 | 89.2 | 0.0 | -3.54 | 0.68 | 0.68 | 0.78 | 0.44 | 3497 | 525 | 12 | 0 | 0 | 0 | 0 | logfile |