Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TMH	10521	2023-02-24	2019-12-04	3.1	3.11	3.02	3.1	0.009	0.70	0.0	0.05	14.39	0.00	1.798	3.85	0.29	4.5	95.5	0.0	-1.93	0.74	0.85	3.59	3.1	0.003	0.56	0.0	0.05	15.87	0.00	1.722	6.19	0.23	3.3	96.7	0.0	0.62	0.80	0.75	0.88	3.23	65358	4264	26	0	10	0	32948	logfile
✔	7Uo1	26637	2023-02-22	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	27.22	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.005	1.86	0.0	0.24	27.85	0.01	1.728	26.76	1.02	7.3	92.7	0.0	-0.76	1.82	0.58	0.66	2.01	16588	112	4	455	10	0	5894	logfile
✔	6WVM	21923	2023-02-25	2020-05-06	3.3	3.76	3.18	3.8	0.013	1.96	6.0	0.10	16.19	0.02	1.972	0.67	0.55	1.9	98.1	0.0	-1.87	0.45	0.49	0.62	3.6	0.003	0.67	0.0	0.04	17.24	0.00	1.730	11.49	0.55	2.9	97.1	0.0	0.10	2.54	0.54	0.78	2.44	26744	1712	8	2	6	0	13046	logfile
✔	7M4U	23666	2023-02-21	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	5H3o	6656	2023-02-22	2016-10-26	3.5	3.66	—	3.6	0.015	1.48	4.0	0.08	16.00	0.01	2.235	19.87	6.55	6.0	93.4	0.6	-3.19	0.78	0.86	1.93	3.6	0.003	0.73	0.0	0.04	17.32	0.00	1.733	13.35	0.43	3.0	97.0	0.0	0.89	0.82	0.73	0.81	1.00	16958	2040	8	0	7	0	0	logfile
✔	7YE2	33762	2023-02-26	2022-07-05	3.8	3.90	3.77	3.8	0.008	0.69	0.0	0.04	16.42	0.00	2.073	47.96	0.35	5.4	94.6	0.0	-3.04	0.73	0.73	1.32	3.8	0.004	0.64	0.0	0.04	18.66	0.00	1.736	75.87	1.23	11.5	88.5	0.0	-1.23	1.23	0.76	0.78	1.78	28925	3588	11	136	4	0	12	logfile
✔	7PTL	13630	2023-02-24	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	6HZ8	0314	2023-02-26	2018-10-22	4.3	4.47	4.31	4.4	0.009	0.99	0.0	0.05	14.59	0.01	1.943	3.29	0.59	2.7	97.3	0.0	-0.48	0.77	0.73	—	4.4	0.005	0.67	0.0	0.04	14.60	0.00	1.739	14.95	0.00	5.3	94.7	0.0	-0.46	1.89	0.79	0.76	—	67582	4120	26	6	12	0	33368	logfile
✔	7AFH	11765	2023-02-22	2020-09-19	3.59	4.69	6.65	2.8	0.009	0.89	2.0	0.05	16.78	0.02	1.752	32.72	0.00	7.5	92.5	0.0	-2.59	0.88	0.82	0.54	2.8	0.006	0.83	0.0	0.04	17.03	0.01	1.745	31.31	0.87	5.3	94.7	0.0	-1.07	1.30	0.89	0.86	0.79	18482	1103	11	456	12	0	0	logfile
✔	7LQE	23483	2023-02-17	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.20	240.0	0.38	25.46	0.02	1.745	134.94	4.40	60.8	38.2	1.0	-8.67	1.67	0.65	0.89	2.25	6048	576	72	0	0	0	0	logfile
✔	6UVN	20908	2023-02-27	2019-11-03	3.1	2.62	—	2.0	0.010	0.84	1.0	0.05	14.35	0.00	2.114	19.06	0.52	8.1	91.8	0.1	-3.87	0.89	0.81	2.57	2.0	0.005	0.66	0.0	0.04	15.79	0.00	1.746	14.24	0.23	6.6	93.4	0.0	-1.26	0.48	0.90	0.82	2.32	29487	3461	14	61	83	0	0	logfile
✔	7UiN	26550	2023-02-21	2022-03-29	2.8	2.99	2.83	3.0	0.010	1.21	1.0	0.05	19.72	0.01	1.477	4.43	2.93	3.7	95.8	0.5	-1.14	0.71	0.80	2.44	3.0	0.005	0.68	0.0	0.04	19.50	0.01	1.748	11.10	3.81	3.4	96.1	0.5	0.38	0.92	0.72	0.85	2.57	15585	387	5	578	30	24	0	logfile
✔	7XSK	33425	2023-02-20	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.68	0.0	0.04	18.66	0.01	1.750	33.29	0.00	0.0	0.0	0.0	—	1.90	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	6PB5	20287	2023-02-27	2019-06-13	4.52	5.95	—	8.8	0.011	1.31	0.0	0.06	16.15	0.01	1.966	13.18	0.26	11.6	87.7	0.7	-4.55	0.58	0.19	—	4.0	0.004	0.80	0.0	0.04	16.87	0.01	1.752	28.81	0.00	11.3	88.5	0.2	-3.26	2.26	0.78	0.63	—	69696	4084	13	156	5	0	34319	logfile
✔	7NJ3	12371	2023-02-26	2021-02-15	4.48	4.72	—	4.6	0.004	0.70	1.0	0.05	13.64	0.00	1.907	8.92	0.38	4.2	95.8	0.0	-0.73	0.57	0.36	—	4.6	0.006	0.81	0.0	0.04	13.81	0.01	1.754	25.03	0.00	8.4	91.6	0.0	-2.08	2.79	0.72	0.62	—	28778	1795	6	23	0	0	13868	logfile
✔	7Z2C	14461	2023-02-20	2022-02-26	4.1	4.33	—	4.0	0.012	1.59	2.0	0.09	14.56	0.01	1.174	9.07	0.48	3.0	96.8	0.2	-0.04	0.76	0.61	—	4.0	0.004	0.64	0.0	0.04	13.72	0.00	1.756	58.61	0.00	5.8	94.1	0.1	-0.41	2.89	0.86	0.77	—	12037	1201	5	0	4	0	2554	logfile
✔	7R6M	24282	2023-02-18	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	17.86	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	18.31	0.01	1.758	16.73	0.00	0.0	0.0	0.0	—	0.19	0.53	0.72	—	7755	0	3	362	13	0	0	logfile
✔	7NB8	12257	2023-02-22	2021-01-25	4.4	4.42	—	4.2	0.018	1.79	1.0	0.09	11.88	0.01	1.811	2.04	0.10	2.8	96.8	0.3	0.01	0.85	0.67	—	4.2	0.003	0.62	0.0	0.04	13.48	0.00	1.758	12.21	0.00	5.1	94.8	0.1	-0.22	2.09	0.90	0.79	—	18570	1177	5	0	4	0	9185	logfile
✔	6KPH	0746	2023-02-24	2019-08-15	2.41	3.45	—	3.2	0.014	1.03	0.0	0.15	13.22	0.00	1.838	8.27	0.00	8.5	91.5	0.0	-4.25	0.81	0.85	4.19	3.2	0.005	0.76	0.0	0.15	14.91	0.00	1.763	7.92	0.75	4.1	95.9	0.0	0.11	0.81	0.80	0.86	4.38	62832	3936	24	0	48	0	31212	logfile
✔	7NBA	12258	2023-02-22	2021-01-25	4.0	3.33	—	3.9	0.019	1.90	0.0	0.09	11.93	0.01	1.868	1.01	0.00	2.8	97.0	0.3	0.17	0.79	0.60	—	3.9	0.004	0.70	0.0	0.04	16.95	0.00	1.763	18.59	0.77	6.7	93.3	0.0	-0.50	2.53	0.86	0.77	—	18742	1185	6	0	6	0	9257	logfile

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