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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E5P | 27917 | 2023-07-10 | 2022-08-22 | 4.4 | 9.89 | 6.01 | 8.2 | 0.003 | 0.64 | 0.0 | 0.04 | 11.32 | 0.00 | 1.299 | 26.66 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.61 | 0.33 | — | 8.2 | 0.003 | 0.69 | 0.0 | 0.04 | 11.81 | 0.00 | 1.266 | 18.73 | 0.00 | 2.8 | 97.2 | 0.0 | 0.85 | 1.53 | 0.85 | 0.77 | — | 20038 | 2502 | 13 | 8 | 18 | 0 | 0 | logfile |
✔ | 6ZLQ | 11272 | 2023-07-15 | 2020-07-01 | 3.3 | 3.41 | — | 3.3 | 0.009 | 0.74 | 0.0 | 0.04 | 17.49 | 0.00 | 0.983 | 15.93 | 8.48 | 3.6 | 96.4 | 0.0 | -3.01 | 0.81 | 0.83 | 1.76 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 18.12 | 0.00 | 1.266 | 15.10 | 0.74 | 1.0 | 99.0 | 0.0 | 3.43 | 0.70 | 0.80 | 0.84 | 1.08 | 33823 | 4185 | 38 | 0 | 16 | 0 | 0 | logfile |
✔ | 8D9D | 27258 | 2023-07-09 | 2022-06-09 | 3.59 | 4.41 | 3.63 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.36 | 0.01 | 2.101 | 7.58 | 0.19 | 3.6 | 96.2 | 0.3 | 0.16 | 0.87 | 0.79 | 1.53 | 4.0 | 0.005 | 0.65 | 0.0 | 0.04 | 16.38 | 0.00 | 1.271 | 10.51 | 0.10 | 4.3 | 95.5 | 0.2 | 0.66 | 1.71 | 0.91 | 0.85 | 1.46 | 19409 | 2312 | 10 | 30 | 8 | 0 | 0 | logfile |
✔ | 7YLX | 33920 | 2023-07-08 | 2022-07-27 | 3.2 | 2.89 | 3.32 | 3.3 | 0.007 | 0.90 | 13.0 | 0.06 | 10.71 | 0.00 | 1.418 | 2.68 | 0.87 | 3.7 | 96.1 | 0.2 | -3.82 | 0.74 | 0.72 | 0.82 | 3.2 | 0.004 | 0.82 | 0.0 | 0.05 | 16.36 | 0.00 | 1.272 | 13.52 | 0.64 | 4.6 | 95.3 | 0.1 | -0.23 | 2.17 | 0.82 | 0.84 | 1.24 | 67085 | 8693 | 47 | 0 | 46 | 14 | 0 | logfile |
✔ | 7LYT | 23601 | 2023-07-07 | 2021-03-08 | 2.9 | 2.52 | 2.91 | 3.0 | 0.009 | 0.55 | 0.0 | 0.04 | 18.78 | 0.03 | 2.087 | 7.16 | 0.33 | 0.0 | 100.0 | 0.0 | -1.59 | 0.82 | 0.80 | 2.24 | 3.0 | 0.004 | 0.85 | 0.0 | 0.04 | 19.93 | 0.00 | 1.280 | 9.04 | 1.82 | 5.4 | 94.6 | 0.0 | -0.15 | 1.22 | 0.83 | 0.82 | 3.02 | 14354 | 712 | 5 | 92 | 6 | 0 | 6722 | logfile |
✔ | 7FEP | 31559 | 2023-07-18 | 2021-07-21 | 3.1 | 3.61 | — | 3.5 | 0.015 | 1.26 | 0.0 | 0.11 | 14.37 | 0.00 | 2.396 | 4.95 | 2.53 | 9.6 | 89.9 | 0.5 | -5.30 | 0.47 | 0.64 | 3.66 | 3.5 | 0.003 | 1.44 | 15.0 | 0.25 | 16.12 | 0.00 | 1.289 | 7.98 | 0.09 | 7.3 | 92.1 | 0.5 | -1.71 | 0.67 | 0.70 | 0.84 | 3.22 | 40381 | 2730 | 28 | 0 | 14 | 0 | 19353 | logfile |
✔ | 6CM3 | 7516 | 2023-07-12 | 2018-03-02 | 3.54 | 3.68 | — | 3.6 | 0.010 | 1.08 | 0.0 | 0.07 | 9.44 | 0.01 | 2.044 | 4.95 | 0.11 | 9.1 | 90.9 | 0.0 | -4.10 | 0.77 | 0.82 | 2.58 | 3.6 | 0.004 | 0.81 | 2.0 | 0.05 | 15.25 | 0.00 | 1.291 | 12.22 | 0.53 | 6.3 | 93.7 | 0.0 | -1.57 | 1.53 | 0.77 | 0.83 | 2.31 | 25455 | 3177 | 39 | 0 | 90 | 0 | 0 | logfile |
✔ | 6FTX | 4318 | 2023-07-10 | 2018-02-25 | 4.5 | 5.25 | — | 4.4 | 0.020 | 2.39 | 14.0 | 0.12 | 26.03 | 0.04 | 1.732 | 68.74 | 3.23 | 8.1 | 90.3 | 1.6 | -2.94 | 0.82 | 0.74 | — | 4.4 | 0.003 | 0.74 | 0.0 | 0.04 | 24.43 | 0.00 | 1.296 | 17.46 | 0.06 | 3.8 | 95.9 | 0.2 | -0.66 | 1.78 | 0.82 | 0.75 | — | 21049 | 1808 | 13 | 319 | 2 | 0 | 0 | logfile |
✔ | 6QC5 | 4497 | 2023-07-07 | 2018-12-26 | 4.3 | 4.44 | 4.37 | 4.3 | 0.009 | 1.29 | 0.0 | 1.03 | 11.80 | 0.01 | 2.162 | 8.03 | 0.72 | 12.3 | 87.5 | 0.2 | -4.12 | 0.64 | 0.77 | — | 4.3 | 0.009 | 1.72 | 0.0 | 0.31 | 13.58 | 0.01 | 1.296 | 20.13 | 0.01 | 10.9 | 89.1 | 0.0 | -1.54 | 1.04 | 0.65 | 0.78 | — | 65691 | 8136 | 57 | 0 | 16 | 0 | 0 | logfile |
✔ | 7LAR | 23249 | 2023-07-08 | 2021-01-06 | 3.8 | 3.68 | — | 3.8 | 0.009 | 1.20 | 0.0 | 0.06 | 17.51 | 0.01 | 1.993 | 5.01 | 7.44 | 1.5 | 98.5 | 0.0 | -2.56 | 0.62 | 0.81 | 2.85 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.50 | 0.00 | 1.298 | 9.23 | 0.52 | 7.4 | 92.5 | 0.1 | -1.73 | 1.47 | 0.61 | 0.81 | 2.60 | 17714 | 1098 | 11 | 6 | 8 | 0 | 8697 | logfile |
✔ | 7LAS | 23250 | 2023-07-09 | 2021-01-06 | 4.4 | 4.09 | — | 4.1 | 0.009 | 1.37 | 0.0 | 0.06 | 18.99 | 0.01 | 1.386 | 5.56 | 7.55 | 1.5 | 98.5 | 0.0 | -2.56 | 0.60 | 0.75 | — | 4.1 | 0.004 | 0.71 | 0.0 | 0.04 | 16.21 | 0.00 | 1.298 | 12.87 | 0.00 | 7.8 | 92.1 | 0.1 | -1.67 | 1.77 | 0.62 | 0.78 | — | 18011 | 1098 | 12 | 24 | 8 | 0 | 8624 | logfile |
✔ | 6Yo0 | 10862 | 2023-07-04 | 2020-04-14 | 2.9 | 3.37 | 2.94 | 3.1 | 0.009 | 0.75 | 0.0 | 0.04 | 9.57 | 0.00 | 1.889 | 11.21 | 0.27 | 3.7 | 96.3 | 0.0 | -0.60 | 0.84 | 0.87 | 3.83 | 3.1 | 0.004 | 0.57 | 0.0 | 0.04 | 13.62 | 0.00 | 1.300 | 8.27 | 0.64 | 4.4 | 95.6 | 0.0 | 1.08 | 0.80 | 0.84 | 0.89 | 3.23 | 55780 | 3598 | 17 | 0 | 10 | 0 | 28102 | logfile |
✔ | 7LoK | 23465 | 2023-07-07 | 2021-02-10 | 3.9 | 4.11 | — | 4.0 | 0.007 | 1.14 | 1.0 | 0.07 | 13.63 | 0.01 | 1.226 | 14.88 | 0.39 | 11.9 | 88.0 | 0.2 | -5.60 | 0.76 | 0.77 | 2.26 | 4.0 | 0.003 | 0.74 | 0.0 | 0.05 | 15.11 | 0.00 | 1.312 | 9.53 | 0.31 | 6.2 | 93.7 | 0.1 | -2.65 | 1.24 | 0.77 | 0.81 | 1.80 | 14498 | 1999 | 19 | 0 | 32 | 0 | 0 | logfile |
✔ | 6LLY | 0915 | 2023-07-04 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.20 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.002 | 0.56 | 0.0 | 0.04 | 15.35 | 0.00 | 1.313 | 7.93 | 1.51 | 3.0 | 97.0 | 0.0 | 0.10 | 0.49 | 0.64 | 0.80 | 1.86 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8GHU | 40051 | 2023-07-19 | 2023-03-12 | 3.0 | 3.91 | 2.97 | 3.6 | 0.006 | 0.74 | 4.0 | 0.06 | 13.30 | 0.00 | 2.190 | 7.98 | 3.01 | 11.1 | 88.9 | 0.1 | -4.69 | 0.72 | 0.52 | 0.96 | 3.6 | 0.004 | 0.64 | 0.0 | 0.03 | 16.76 | 0.00 | 1.316 | 14.70 | 2.95 | 7.0 | 93.0 | 0.0 | -2.99 | 1.64 | 0.75 | 0.54 | 1.55 | 47408 | 1828 | 20 | 1531 | 84 | 0 | 0 | logfile |
✔ | 7NKU | 12448 | 2023-07-12 | 2021-02-19 | 3.4 | 3.03 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.05 | 14.98 | 0.01 | 1.986 | 17.36 | 0.00 | 9.2 | 90.8 | 0.0 | -0.63 | 0.74 | 0.77 | 1.90 | 3.1 | 0.004 | 0.81 | 0.0 | 0.04 | 17.70 | 0.01 | 1.318 | 17.14 | 0.56 | 7.3 | 92.7 | 0.0 | -0.05 | 0.69 | 0.73 | 0.79 | 1.22 | 25332 | 3252 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 6JT2 | 9885 | 2023-07-04 | 2019-04-08 | 3.8 | 3.88 | — | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 11.14 | 0.01 | 1.980 | 10.08 | 3.54 | 4.0 | 95.7 | 0.3 | -2.54 | 0.80 | 0.80 | 2.23 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 13.57 | 0.00 | 1.319 | 10.96 | 0.12 | 3.7 | 96.3 | 0.0 | -0.17 | 1.66 | 0.82 | 0.81 | 1.64 | 8191 | 1075 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7WTK | 32789 | 2023-07-15 | 2022-02-04 | 3.6 | 3.91 | — | 3.7 | 0.006 | 1.00 | 14.0 | 0.07 | 14.34 | 0.01 | 1.732 | 9.94 | 1.20 | 8.0 | 91.5 | 0.5 | -2.94 | 0.80 | 0.80 | 1.72 | 3.7 | 0.004 | 0.66 | 0.0 | 0.05 | 15.43 | 0.00 | 1.325 | 11.69 | 0.15 | 8.3 | 91.6 | 0.1 | -1.73 | 1.90 | 0.80 | 0.80 | 1.45 | 31895 | 3975 | 30 | 0 | 70 | 0 | 0 | logfile |
✔ | 6W98 | 21580 | 2023-07-05 | 2020-03-22 | 2.9 | 3.47 | 2.92 | 3.3 | 0.010 | 0.86 | 0.0 | 0.05 | 12.85 | 0.01 | 1.990 | 2.62 | 0.00 | 4.4 | 95.6 | 0.1 | -4.30 | 0.67 | 0.84 | 3.77 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 14.49 | 0.00 | 1.327 | 7.85 | 1.81 | 3.9 | 96.1 | 0.0 | -0.06 | 0.49 | 0.67 | 0.85 | 3.05 | 10317 | 1389 | 3 | 0 | 4 | 1 | 0 | logfile |
✔ | 7Y8R | 33684 | 2023-07-18 | 2022-06-24 | 4.4 | 5.29 | 5.72 | 4.4 | 0.003 | 0.54 | 0.0 | 0.04 | 18.39 | 0.00 | 1.920 | 4.56 | 0.05 | 5.0 | 94.9 | 0.1 | -1.79 | 0.72 | 0.53 | — | 4.4 | 0.003 | 0.70 | 0.0 | 0.04 | 20.02 | 0.00 | 1.331 | 16.15 | 0.03 | 6.9 | 93.0 | 0.0 | -0.48 | 1.66 | 0.83 | 0.80 | — | 43109 | 4407 | 28 | 330 | 174 | 0 | 0 | logfile |