Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E5P	27917	2023-07-10	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.32	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.003	0.69	0.0	0.04	11.81	0.00	1.266	18.73	0.00	2.8	97.2	0.0	0.85	1.53	0.85	0.77	—	20038	2502	13	8	18	0	0	logfile
✔	6ZLQ	11272	2023-07-15	2020-07-01	3.3	3.41	—	3.3	0.009	0.74	0.0	0.04	17.49	0.00	0.983	15.93	8.48	3.6	96.4	0.0	-3.01	0.81	0.83	1.76	3.3	0.003	0.62	0.0	0.04	18.12	0.00	1.266	15.10	0.74	1.0	99.0	0.0	3.43	0.70	0.80	0.84	1.08	33823	4185	38	0	16	0	0	logfile
✔	8D9D	27258	2023-07-09	2022-06-09	3.59	4.41	3.63	3.9	0.003	0.66	0.0	0.04	15.36	0.01	2.101	7.58	0.19	3.6	96.2	0.3	0.16	0.87	0.79	1.53	4.0	0.005	0.65	0.0	0.04	16.38	0.00	1.271	10.51	0.10	4.3	95.5	0.2	0.66	1.71	0.91	0.85	1.46	19409	2312	10	30	8	0	0	logfile
✔	7YLX	33920	2023-07-08	2022-07-27	3.2	2.89	3.32	3.3	0.007	0.90	13.0	0.06	10.71	0.00	1.418	2.68	0.87	3.7	96.1	0.2	-3.82	0.74	0.72	0.82	3.2	0.004	0.82	0.0	0.05	16.36	0.00	1.272	13.52	0.64	4.6	95.3	0.1	-0.23	2.17	0.82	0.84	1.24	67085	8693	47	0	46	14	0	logfile
✔	7LYT	23601	2023-07-07	2021-03-08	2.9	2.52	2.91	3.0	0.009	0.55	0.0	0.04	18.78	0.03	2.087	7.16	0.33	0.0	100.0	0.0	-1.59	0.82	0.80	2.24	3.0	0.004	0.85	0.0	0.04	19.93	0.00	1.280	9.04	1.82	5.4	94.6	0.0	-0.15	1.22	0.83	0.82	3.02	14354	712	5	92	6	0	6722	logfile
✔	7FEP	31559	2023-07-18	2021-07-21	3.1	3.61	—	3.5	0.015	1.26	0.0	0.11	14.37	0.00	2.396	4.95	2.53	9.6	89.9	0.5	-5.30	0.47	0.64	3.66	3.5	0.003	1.44	15.0	0.25	16.12	0.00	1.289	7.98	0.09	7.3	92.1	0.5	-1.71	0.67	0.70	0.84	3.22	40381	2730	28	0	14	0	19353	logfile
✔	6CM3	7516	2023-07-12	2018-03-02	3.54	3.68	—	3.6	0.010	1.08	0.0	0.07	9.44	0.01	2.044	4.95	0.11	9.1	90.9	0.0	-4.10	0.77	0.82	2.58	3.6	0.004	0.81	2.0	0.05	15.25	0.00	1.291	12.22	0.53	6.3	93.7	0.0	-1.57	1.53	0.77	0.83	2.31	25455	3177	39	0	90	0	0	logfile
✔	6FTX	4318	2023-07-10	2018-02-25	4.5	5.25	—	4.4	0.020	2.39	14.0	0.12	26.03	0.04	1.732	68.74	3.23	8.1	90.3	1.6	-2.94	0.82	0.74	—	4.4	0.003	0.74	0.0	0.04	24.43	0.00	1.296	17.46	0.06	3.8	95.9	0.2	-0.66	1.78	0.82	0.75	—	21049	1808	13	319	2	0	0	logfile
✔	6QC5	4497	2023-07-07	2018-12-26	4.3	4.44	4.37	4.3	0.009	1.29	0.0	1.03	11.80	0.01	2.162	8.03	0.72	12.3	87.5	0.2	-4.12	0.64	0.77	—	4.3	0.009	1.72	0.0	0.31	13.58	0.01	1.296	20.13	0.01	10.9	89.1	0.0	-1.54	1.04	0.65	0.78	—	65691	8136	57	0	16	0	0	logfile
✔	7LAR	23249	2023-07-08	2021-01-06	3.8	3.68	—	3.8	0.009	1.20	0.0	0.06	17.51	0.01	1.993	5.01	7.44	1.5	98.5	0.0	-2.56	0.62	0.81	2.85	3.8	0.003	0.67	0.0	0.04	16.50	0.00	1.298	9.23	0.52	7.4	92.5	0.1	-1.73	1.47	0.61	0.81	2.60	17714	1098	11	6	8	0	8697	logfile
✔	7LAS	23250	2023-07-09	2021-01-06	4.4	4.09	—	4.1	0.009	1.37	0.0	0.06	18.99	0.01	1.386	5.56	7.55	1.5	98.5	0.0	-2.56	0.60	0.75	—	4.1	0.004	0.71	0.0	0.04	16.21	0.00	1.298	12.87	0.00	7.8	92.1	0.1	-1.67	1.77	0.62	0.78	—	18011	1098	12	24	8	0	8624	logfile
✔	6Yo0	10862	2023-07-04	2020-04-14	2.9	3.37	2.94	3.1	0.009	0.75	0.0	0.04	9.57	0.00	1.889	11.21	0.27	3.7	96.3	0.0	-0.60	0.84	0.87	3.83	3.1	0.004	0.57	0.0	0.04	13.62	0.00	1.300	8.27	0.64	4.4	95.6	0.0	1.08	0.80	0.84	0.89	3.23	55780	3598	17	0	10	0	28102	logfile
✔	7LoK	23465	2023-07-07	2021-02-10	3.9	4.11	—	4.0	0.007	1.14	1.0	0.07	13.63	0.01	1.226	14.88	0.39	11.9	88.0	0.2	-5.60	0.76	0.77	2.26	4.0	0.003	0.74	0.0	0.05	15.11	0.00	1.312	9.53	0.31	6.2	93.7	0.1	-2.65	1.24	0.77	0.81	1.80	14498	1999	19	0	32	0	0	logfile
✔	6LLY	0915	2023-07-04	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.20	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.002	0.56	0.0	0.04	15.35	0.00	1.313	7.93	1.51	3.0	97.0	0.0	0.10	0.49	0.64	0.80	1.86	7774	1006	1	0	2	0	0	logfile
✔	8GHU	40051	2023-07-19	2023-03-12	3.0	3.91	2.97	3.6	0.006	0.74	4.0	0.06	13.30	0.00	2.190	7.98	3.01	11.1	88.9	0.1	-4.69	0.72	0.52	0.96	3.6	0.004	0.64	0.0	0.03	16.76	0.00	1.316	14.70	2.95	7.0	93.0	0.0	-2.99	1.64	0.75	0.54	1.55	47408	1828	20	1531	84	0	0	logfile
✔	7NKU	12448	2023-07-12	2021-02-19	3.4	3.03	—	3.1	0.008	0.94	0.0	0.05	14.98	0.01	1.986	17.36	0.00	9.2	90.8	0.0	-0.63	0.74	0.77	1.90	3.1	0.004	0.81	0.0	0.04	17.70	0.01	1.318	17.14	0.56	7.3	92.7	0.0	-0.05	0.69	0.73	0.79	1.22	25332	3252	12	0	18	0	0	logfile
✔	6JT2	9885	2023-07-04	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.14	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.003	0.69	0.0	0.04	13.57	0.00	1.319	10.96	0.12	3.7	96.3	0.0	-0.17	1.66	0.82	0.81	1.64	8191	1075	4	0	4	0	0	logfile
✔	7WTK	32789	2023-07-15	2022-02-04	3.6	3.91	—	3.7	0.006	1.00	14.0	0.07	14.34	0.01	1.732	9.94	1.20	8.0	91.5	0.5	-2.94	0.80	0.80	1.72	3.7	0.004	0.66	0.0	0.05	15.43	0.00	1.325	11.69	0.15	8.3	91.6	0.1	-1.73	1.90	0.80	0.80	1.45	31895	3975	30	0	70	0	0	logfile
✔	6W98	21580	2023-07-05	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.86	0.0	0.05	12.85	0.01	1.990	2.62	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	3.3	0.003	0.65	0.0	0.04	14.49	0.00	1.327	7.85	1.81	3.9	96.1	0.0	-0.06	0.49	0.67	0.85	3.05	10317	1389	3	0	4	1	0	logfile
✔	7Y8R	33684	2023-07-18	2022-06-24	4.4	5.29	5.72	4.4	0.003	0.54	0.0	0.04	18.39	0.00	1.920	4.56	0.05	5.0	94.9	0.1	-1.79	0.72	0.53	—	4.4	0.003	0.70	0.0	0.04	20.02	0.00	1.331	16.15	0.03	6.9	93.0	0.0	-0.48	1.66	0.83	0.80	—	43109	4407	28	330	174	0	0	logfile

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