Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BYN	30246	2023-04-23	2020-04-23	3.3	3.57	—	3.6	0.011	1.29	0.0	0.05	20.66	0.01	1.949	24.44	16.39	2.9	96.9	0.2	-0.58	0.48	0.52	0.70	3.6	0.003	0.63	0.0	0.03	17.31	0.00	2.167	8.91	0.35	1.4	98.6	0.1	2.08	1.00	0.59	0.79	0.71	16349	2000	12	0	8	0	0	logfile
✔	6LiD	0904	2023-04-24	2019-12-10	2.7	2.74	—	2.7	0.007	1.00	0.0	0.06	14.18	0.01	1.890	3.67	1.96	4.8	95.1	0.1	-4.84	0.62	0.74	3.13	2.7	0.002	0.70	0.0	0.05	16.03	0.00	2.197	6.69	2.06	4.0	96.0	0.0	0.14	0.61	0.72	0.87	2.82	17964	2162	22	0	26	246	0	logfile
✔	7KLU	22918	2023-04-25	2020-11-01	3.5	3.35	—	3.4	0.004	0.60	0.0	0.04	15.43	0.00	2.005	5.76	0.00	4.0	96.0	0.0	-0.73	0.77	0.80	2.13	3.4	0.004	0.61	0.0	0.04	17.17	0.00	1.863	8.64	0.09	6.2	93.8	0.0	-1.15	0.95	0.78	0.82	2.23	19742	2452	8	0	12	0	0	logfile
✔	5UAR	8461	2023-04-21	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.4	0.003	0.72	0.0	0.04	16.08	0.00	2.142	10.48	0.39	4.6	95.4	0.0	-0.29	1.53	0.61	0.80	0.97	9489	1184	1	0	2	0	0	logfile
✔	7CN1	30413	2023-04-20	2020-07-29	3.7	3.74	—	3.7	0.008	0.78	0.0	0.05	13.72	0.00	2.147	16.07	0.32	10.2	89.8	0.0	-3.65	0.47	0.79	1.71	3.7	0.002	0.60	0.0	0.04	15.22	0.00	2.206	8.47	0.32	5.1	94.9	0.0	0.32	0.61	0.48	0.75	1.56	6290	822	6	0	3	0	0	logfile
✔	7CH1	30368	2023-04-21	2020-07-03	2.6	2.70	—	2.8	0.007	0.87	0.0	0.06	15.52	0.01	2.218	3.39	6.10	4.3	95.6	0.2	-5.35	0.66	0.86	3.92	2.7	0.003	0.59	0.0	0.04	14.61	0.00	2.234	4.04	1.48	3.5	96.5	0.0	1.89	1.63	0.69	0.89	3.15	9948	1280	6	0	6	76	0	logfile
✔	6XLH	22244	2023-04-22	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.004	0.62	0.0	0.04	16.39	0.00	1.913	9.37	1.67	3.1	96.9	0.0	-0.57	0.88	0.77	0.88	3.86	13608	1675	6	0	6	0	0	logfile
✔	7WHK	32503	2023-04-29	2021-12-30	3.01	2.59	—	3.1	0.004	0.70	1.0	0.05	11.56	0.01	2.208	7.01	6.30	5.6	94.1	0.3	-3.45	0.78	0.76	2.28	3.0	0.003	0.74	0.0	0.05	14.08	0.00	2.041	11.38	0.41	6.3	93.6	0.0	-1.41	0.71	0.79	0.82	2.57	29150	3697	11	0	28	0	0	logfile
✔	7T4Q	25685	2023-04-23	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.96	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.003	0.71	0.0	0.04	16.18	0.00	2.141	8.93	2.58	3.0	97.0	0.0	0.35	1.31	0.76	0.85	2.90	15473	1946	15	0	6	0	0	logfile
✔	7CGP	9958	2023-04-22	2020-07-01	3.7	3.87	—	3.8	0.006	0.66	0.0	0.04	14.71	0.00	1.852	10.54	0.53	5.1	94.9	0.0	-2.68	0.68	0.81	1.54	3.8	0.005	0.94	0.0	0.05	17.56	0.00	2.080	17.60	1.50	4.3	95.7	0.0	0.60	1.08	0.69	0.82	1.03	12433	1569	16	0	1	0	0	logfile
✔	6LR4	0957	2023-04-21	2020-01-15	3.0	3.16	—	3.1	0.011	1.00	0.0	0.06	10.34	0.01	2.289	2.99	0.09	5.8	94.2	0.0	-3.96	0.64	0.84	4.36	3.1	0.005	0.68	0.0	0.04	15.05	0.00	2.185	5.33	1.95	5.3	94.7	0.0	0.02	0.54	0.67	0.87	2.81	10838	1314	13	0	27	0	0	logfile
✔	7TRC	26085	2023-04-23	2022-01-28	3.3	3.10	—	3.3	0.003	0.64	0.0	0.04	14.83	0.00	2.121	8.21	0.21	4.2	95.8	0.0	-1.82	0.66	0.74	2.50	3.2	0.003	0.63	0.0	0.04	16.61	0.00	2.135	9.95	0.21	4.3	95.7	0.0	-1.17	0.51	0.68	0.77	2.09	14747	1599	10	92	0	0	0	logfile
✔	8EMC	28244	2023-04-27	2022-09-27	3.6	4.48	3.74	3.5	0.004	0.73	0.0	0.04	13.02	0.00	1.997	13.13	0.01	4.7	95.0	0.3	0.35	0.87	0.80	1.42	3.5	0.003	0.62	0.0	0.04	14.48	0.00	2.088	13.88	0.18	4.7	95.1	0.2	0.88	1.27	0.91	0.83	1.46	73331	9328	14	0	0	0	0	logfile
✔	7L2S	23139	2023-04-25	2020-12-17	2.71	3.03	2.68	3.0	0.007	0.95	0.0	0.25	12.59	0.00	2.157	0.85	0.68	6.0	93.9	0.0	0.35	0.65	0.89	4.03	3.0	0.002	0.58	0.0	0.04	14.77	0.00	2.152	3.85	1.35	6.1	93.9	0.0	1.17	1.00	0.62	0.89	2.71	20579	2506	8	0	9	0	0	logfile
✔	7JPo	22417	2023-04-23	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.39	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.003	0.55	0.0	0.04	16.90	0.00	1.959	5.65	0.11	2.4	97.6	0.0	0.62	0.45	0.81	0.83	1.84	16087	1966	9	0	7	0	0	logfile
✔	6M4o	30080	2023-04-21	2020-03-08	3.4	3.64	—	3.6	0.007	1.14	0.0	0.06	11.53	0.01	2.203	4.58	1.15	11.4	88.4	0.2	-5.81	0.66	0.81	3.38	3.6	0.003	0.72	0.0	0.04	15.29	0.00	2.164	9.50	0.10	8.9	91.1	0.0	-1.74	1.75	0.68	0.83	2.70	8918	1127	6	0	1	0	0	logfile
✔	7MZC	24089	2023-04-24	2021-05-24	3.03	3.16	2.96	3.2	0.012	0.90	0.0	0.05	11.78	0.01	2.028	1.92	1.12	5.3	94.6	0.1	0.39	0.61	0.87	3.33	3.2	0.003	0.63	0.0	0.04	15.62	0.00	2.109	8.65	0.54	5.5	94.5	0.0	0.78	1.64	0.63	0.89	1.93	17334	2112	8	0	6	0	0	logfile
✔	7VHJ	31996	2023-04-27	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.004	0.67	0.0	0.04	13.43	0.00	2.034	14.92	0.00	7.7	92.3	0.0	-1.62	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	7L8F	23232	2023-04-23	2020-12-31	3.66	3.77	3.54	3.7	0.022	1.69	0.0	0.14	9.92	0.02	2.118	1.45	0.00	1.7	98.3	0.0	0.91	0.70	0.79	2.06	3.7	0.003	0.66	0.0	0.04	15.09	0.00	2.146	7.24	0.46	3.2	96.8	0.0	0.07	2.58	0.72	0.82	2.58	15840	1705	28	0	320	0	0	logfile
✔	7LA4	23245	2023-04-20	2021-01-05	3.3	3.51	—	3.5	0.006	0.84	1.0	0.06	14.95	0.00	2.100	16.95	1.91	9.6	89.9	0.5	-4.02	0.75	0.82	3.50	3.5	0.004	0.65	0.0	0.05	15.85	0.00	2.055	14.00	0.45	8.8	91.2	0.0	-2.85	0.47	0.76	0.84	3.03	8281	1052	10	0	17	4	0	logfile

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