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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7X06 | 32918 | 2023-11-15 | 2022-02-21 | 3.1 | 3.31 | — | 3.2 | 0.003 | 0.51 | 0.0 | 0.04 | 10.34 | 0.00 | 2.215 | 3.96 | 0.43 | 4.1 | 95.9 | 0.0 | 2.06 | 0.66 | 0.82 | 2.47 | 3.3 | 0.004 | 0.56 | 0.0 | 0.04 | 14.63 | 0.00 | 2.214 | 5.56 | 0.14 | 6.5 | 93.5 | 0.0 | 1.52 | 1.17 | 0.66 | 0.84 | 2.20 | 12964 | 1608 | 4 | 2 | 2 | 0 | 0 | logfile |
✔ | 6VBW | 21146 | 2023-11-20 | 2019-12-19 | 3.2 | 3.31 | — | 3.3 | 0.011 | 1.19 | 2.0 | 0.07 | 14.36 | 0.01 | 2.057 | 12.06 | 1.96 | 8.5 | 91.4 | 0.1 | -4.69 | 0.75 | 0.79 | 3.46 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 16.72 | 0.00 | 2.155 | 9.38 | 0.14 | 6.0 | 94.0 | 0.0 | -1.35 | 1.69 | 0.78 | 0.85 | 2.35 | 29087 | 3343 | 15 | 107 | 4 | 0 | 0 | logfile |
✔ | 6PPK | 20441 | 2023-11-19 | 2019-07-07 | 4.4 | 4.58 | — | 4.5 | 0.008 | 1.08 | 15.0 | 0.05 | 20.24 | 0.01 | 1.150 | 22.61 | 8.03 | 11.8 | 87.5 | 0.7 | -4.28 | 0.88 | 0.83 | — | 4.4 | 0.004 | 0.69 | 0.0 | 0.04 | 18.96 | 0.00 | 2.055 | 23.12 | 0.00 | 8.7 | 91.3 | 0.1 | -2.05 | 1.60 | 0.88 | 0.83 | — | 80451 | 2684 | 24 | 2770 | 1 | 0 | 0 | logfile |
✔ | 7MR1 | 23953 | 2023-11-17 | 2021-05-07 | 4.2 | 4.74 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 14.91 | 0.01 | 2.237 | 5.74 | 0.00 | 5.5 | 94.5 | 0.0 | -1.78 | 0.85 | 0.84 | — | 4.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.81 | 0.00 | 2.159 | 12.63 | 0.00 | 7.5 | 92.4 | 0.0 | -0.59 | 0.33 | 0.85 | 0.84 | — | 18473 | 2316 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MR4 | 23956 | 2023-11-17 | 2021-05-07 | 4.5 | 4.68 | — | 4.5 | 0.004 | 0.86 | 0.0 | 0.05 | 16.97 | 0.01 | 2.014 | 7.21 | 0.00 | 5.4 | 94.6 | 0.0 | -1.71 | 0.82 | 0.81 | — | 4.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.75 | 0.00 | 2.159 | 14.62 | 0.06 | 6.1 | 93.9 | 0.0 | -0.16 | 0.50 | 0.82 | 0.82 | — | 17203 | 2057 | 5 | 33 | 0 | 0 | 0 | logfile |
✔ | 7WBB | 32396 | 2023-11-21 | 2021-12-16 | 3.6 | 3.64 | — | 3.5 | 0.002 | 0.55 | 2.0 | 0.04 | 13.74 | 0.00 | 2.206 | 9.66 | 0.11 | 5.0 | 94.6 | 0.3 | 0.91 | 0.80 | 0.74 | 0.62 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 15.29 | 0.00 | 2.185 | 10.94 | 0.25 | 5.8 | 93.7 | 0.4 | 0.32 | 1.90 | 0.83 | 0.80 | 1.15 | 33634 | 4329 | 13 | 0 | 33 | 0 | 0 | logfile |
✔ | 7WoA | 32646 | 2023-11-21 | 2022-01-21 | 3.25 | 2.98 | — | 3.2 | 0.002 | 0.45 | 0.0 | 0.04 | 8.94 | 0.00 | 2.229 | 6.56 | 4.23 | 3.8 | 96.2 | 0.0 | -3.46 | 0.86 | 0.78 | 2.52 | 3.2 | 0.004 | 0.67 | 0.0 | 0.05 | 13.80 | 0.00 | 2.135 | 10.52 | 0.43 | 7.5 | 92.5 | 0.0 | -1.91 | 1.43 | 0.89 | 0.85 | 2.88 | 31952 | 4060 | 10 | 0 | 39 | 0 | 0 | logfile |
✔ | 7JW0 | 22512 | 2023-11-19 | 2020-08-24 | 4.3 | 4.63 | 4.41 | 4.4 | 0.010 | 1.54 | 6.0 | 0.10 | 8.01 | 0.01 | 2.527 | 0.37 | 0.00 | 2.3 | 97.5 | 0.1 | 1.05 | 0.81 | 0.71 | — | 4.4 | 0.003 | 0.64 | 0.0 | 0.05 | 9.97 | 0.00 | 2.180 | 5.50 | 0.00 | 3.4 | 96.6 | 0.0 | 0.41 | 1.28 | 0.85 | 0.79 | — | 26251 | 4314 | 27 | 0 | 69 | 0 | 0 | logfile |
✔ | 7S1M | 24805 | 2023-11-14 | 2021-09-02 | 2.41 | 2.95 | 2.09 | 2.8 | 0.003 | 0.51 | 0.0 | 0.04 | 13.54 | 0.00 | 2.233 | 4.89 | 0.10 | 1.9 | 98.1 | 0.0 | 1.84 | 0.81 | 0.87 | 3.93 | 2.8 | 0.003 | 0.54 | 0.0 | 0.04 | 15.96 | 0.00 | 2.152 | 5.62 | 1.36 | 1.8 | 98.2 | 0.0 | 1.68 | 0.92 | 0.77 | 0.87 | 3.72 | 9160 | 1168 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WUT | 32841 | 2023-11-14 | 2022-02-09 | 3.5 | 4.38 | — | 3.9 | 0.003 | 0.83 | 0.0 | 0.05 | 16.78 | 0.00 | 2.139 | 13.93 | 0.20 | 13.3 | 86.4 | 0.3 | -1.82 | 0.86 | 0.78 | 1.34 | 3.9 | 0.003 | 0.86 | 0.0 | 0.05 | 17.31 | 0.00 | 2.234 | 17.51 | 0.39 | 13.7 | 86.0 | 0.3 | -1.85 | 0.30 | 0.86 | 0.78 | 1.39 | 9732 | 1264 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EJ2 | 31149 | 2023-11-18 | 2021-04-01 | 3.3 | 3.53 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.06 | 15.52 | 0.01 | 2.290 | 7.49 | 0.19 | 4.8 | 95.1 | 0.1 | -5.99 | 0.81 | 0.85 | 3.23 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 15.70 | 0.00 | 2.192 | 8.75 | 0.24 | 2.2 | 97.8 | 0.0 | -1.52 | 0.57 | 0.84 | 0.87 | 2.77 | 20968 | 2728 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 6V8X | 21111 | 2023-11-19 | 2019-12-12 | 3.0 | 3.33 | — | 3.2 | 0.017 | 1.48 | 9.0 | 0.08 | 9.76 | 0.01 | 2.180 | 4.31 | 0.23 | 8.5 | 90.6 | 0.9 | -3.90 | 0.82 | 0.77 | 2.66 | 3.2 | 0.004 | 0.85 | 0.0 | 0.05 | 14.98 | 0.00 | 2.151 | 12.63 | 3.42 | 7.7 | 92.0 | 0.3 | -1.96 | 1.44 | 0.84 | 0.81 | 2.32 | 24825 | 2997 | 54 | 0 | 105 | 0 | 0 | logfile |
✔ | 7MR0 | 23952 | 2023-11-17 | 2021-05-07 | 3.7 | 4.10 | — | 4.0 | 0.003 | 0.81 | 0.0 | 0.05 | 15.13 | 0.01 | 2.284 | 4.14 | 0.44 | 5.8 | 94.2 | 0.0 | -1.82 | 0.84 | 0.82 | 1.66 | 4.0 | 0.005 | 0.66 | 0.0 | 0.04 | 16.44 | 0.00 | 2.174 | 9.21 | 0.29 | 7.5 | 92.5 | 0.0 | -0.46 | 0.36 | 0.85 | 0.84 | 1.84 | 19282 | 2400 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6D7S | 7824 | 2023-11-17 | 2018-04-25 | 4.34 | 4.44 | — | 4.3 | 0.007 | 1.16 | 0.0 | 0.06 | 11.86 | 0.01 | 2.248 | 7.14 | 1.17 | 12.1 | 87.8 | 0.2 | -5.61 | 0.77 | 0.79 | — | 4.3 | 0.003 | 0.84 | 0.0 | 0.04 | 13.76 | 0.00 | 2.227 | 15.13 | 0.15 | 10.2 | 89.8 | 0.0 | -1.25 | 1.42 | 0.77 | 0.80 | — | 19018 | 2372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X75 | 33032 | 2023-11-21 | 2022-03-09 | 3.45 | 3.68 | 3.54 | 3.6 | 0.004 | 0.75 | 1.0 | 0.05 | 19.81 | 0.00 | 1.963 | 4.97 | 0.66 | 3.2 | 96.8 | 0.0 | 0.42 | 0.78 | 0.73 | 1.36 | 3.6 | 0.004 | 0.73 | 0.0 | 0.04 | 20.44 | 0.00 | 2.021 | 13.63 | 0.51 | 4.0 | 96.0 | 0.0 | 0.06 | 0.60 | 0.81 | 0.80 | 1.46 | 34872 | 4055 | 22 | 168 | 21 | 0 | 0 | logfile |
✔ | 6KS7 | 0759 | 2023-11-15 | 2019-08-23 | 4.62 | 4.57 | — | 4.5 | 0.001 | 0.39 | 0.0 | 0.04 | 7.11 | 0.00 | 2.241 | 5.72 | 0.00 | 4.3 | 95.7 | 0.0 | -3.50 | 0.70 | 0.62 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.04 | 12.04 | 0.00 | 2.131 | 14.80 | 0.03 | 3.3 | 96.6 | 0.1 | -0.06 | 1.85 | 0.74 | 0.67 | — | 62022 | 8131 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PZA | 20530 | 2023-11-14 | 2019-07-31 | 3.74 | 3.92 | — | 3.9 | 0.008 | 1.06 | 0.0 | 0.06 | 10.72 | 0.01 | 2.252 | 3.22 | 0.00 | 8.0 | 92.0 | 0.0 | -4.29 | 0.51 | 0.50 | 0.87 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.90 | 0.00 | 2.228 | 9.43 | 0.58 | 5.0 | 95.0 | 0.0 | 0.79 | 1.25 | 0.62 | 0.79 | 0.90 | 9659 | 1441 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 8EXQ | 28659 | 2023-11-14 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 6.0 | 0.003 | 0.74 | 0.0 | 0.04 | 12.89 | 0.00 | 2.068 | 17.98 | 0.00 | 5.3 | 94.5 | 0.2 | -0.50 | 2.54 | 0.58 | 0.63 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8AT6 | 15635 | 2023-11-15 | 2022-08-22 | 3.7 | 3.84 | 3.67 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 16.25 | 0.00 | 2.222 | 9.66 | 0.00 | 5.9 | 93.8 | 0.3 | 0.49 | 0.89 | 0.85 | 1.40 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 16.67 | 0.00 | 2.194 | 9.06 | 0.07 | 5.4 | 94.4 | 0.2 | 0.92 | 0.25 | 0.88 | 0.85 | 1.30 | 12583 | 1580 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XNP | 33322 | 2023-11-15 | 2022-04-29 | 2.9 | 2.50 | 2.96 | 2.9 | 0.005 | 0.75 | 0.0 | 0.04 | 27.32 | 0.01 | 2.297 | 2.36 | 0.00 | 2.1 | 97.9 | 0.0 | -0.95 | 0.72 | 0.77 | 3.05 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 28.21 | 0.00 | 2.176 | 6.58 | 1.94 | 2.1 | 97.9 | 0.0 | 2.22 | 0.28 | 0.72 | 0.80 | 2.82 | 10943 | 746 | 10 | 246 | 0 | 0 | 0 | logfile |