Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E23	30950	2023-02-17	2021-02-04	3.3	3.62	—	3.6	0.004	0.82	0.0	0.05	14.42	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.003	0.73	0.0	0.05	16.29	0.00	2.170	13.39	0.30	16.0	84.0	0.0	-3.11	1.16	0.71	0.80	1.67	3133	403	4	0	1	0	0	logfile
✔	6oKS	20103	2023-02-20	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.004	0.84	0.0	0.05	14.37	0.01	2.223	15.59	0.00	16.0	84.0	0.0	-4.93	2.23	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	5XLo	6729	2023-02-21	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.20	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile
✔	7FG3	31577	2023-02-18	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	6NY3	8980	2023-02-19	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	19.98	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.84	0.76	0.84	1.41	4.0	0.003	0.66	0.0	0.04	19.90	0.00	2.137	9.68	0.66	15.7	84.1	0.1	-1.78	1.01	0.66	0.77	0.74	10214	794	4	164	121	0	0	logfile
✔	7JSE	22451	2023-02-20	2020-08-14	4.6	5.13	—	4.2	0.001	0.38	0.0	0.02	10.51	0.00	2.425	0.00	0.00	11.4	88.0	0.6	-2.68	0.79	0.50	—	3.8	0.006	1.04	0.0	0.08	14.36	0.00	2.181	8.70	0.00	15.8	84.2	0.0	-2.47	2.74	0.84	0.74	—	13288	3168	24	32	0	0	0	logfile
✔	7JMN	22397	2023-02-21	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.04	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	3.8	0.003	0.84	0.0	0.04	16.33	0.00	2.188	10.21	0.21	15.5	84.2	0.3	-3.53	1.24	0.78	0.77	1.31	13633	1756	5	0	52	0	0	logfile
✔	7KVE	23048	2023-02-20	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.23	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.004	0.75	0.0	0.05	16.56	0.01	2.115	14.36	0.33	15.8	84.2	0.0	-4.11	1.22	0.75	0.74	2.41	11142	1374	1	0	0	0	0	logfile
✔	6QX7	4662	2023-02-25	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.004	0.94	0.0	0.05	17.09	0.01	2.061	21.16	0.77	15.3	84.3	0.4	-2.07	1.16	0.66	0.59	0.63	25164	3072	12	0	0	0	0	logfile
✔	6PiF	20349	2023-02-26	2019-06-26	3.4	3.57	3.44	3.5	0.014	1.74	2.0	0.09	16.21	0.00	1.256	6.99	2.17	14.8	81.3	3.9	-4.83	0.64	0.76	2.73	3.5	0.003	0.84	1.0	0.04	16.97	0.00	2.121	11.67	0.49	15.1	84.4	0.5	-2.75	1.58	0.72	0.85	2.23	28954	3448	11	60	0	0	0	logfile
✔	7V48	31703	2023-02-16	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.003	0.65	0.0	0.05	14.23	0.00	2.197	4.51	4.17	15.6	84.4	0.0	-5.01	0.50	0.39	0.76	4.74	2598	378	6	0	0	0	0	logfile
✔	5XLP	6731	2023-02-19	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.003	0.91	0.0	0.04	15.84	0.01	1.956	18.56	0.11	15.4	84.4	0.2	-3.85	2.41	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	7XJX	33236	2023-02-16	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.006	0.81	0.0	0.05	14.46	0.00	2.387	11.15	3.70	15.6	84.4	0.0	-3.69	1.14	0.45	0.81	5.25	2628	378	6	0	0	0	0	logfile
✔	5Li4	4052	2023-02-23	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.03	0.0	0.05	13.74	0.01	2.093	29.26	0.00	14.4	84.4	1.2	-3.64	4.18	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	6JBH	9790	2023-02-18	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	5.98	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	0.96	0.0	0.05	16.03	0.00	2.205	14.14	0.85	15.5	84.5	0.0	-2.08	0.98	0.68	0.81	2.06	8592	1062	4	0	0	0	0	logfile
✔	6i5T	4418	2023-02-20	2018-11-14	3.9	3.96	—	3.9	0.006	1.11	0.0	0.06	10.10	0.01	2.362	4.19	0.43	15.1	84.2	0.7	-5.80	0.47	0.85	3.20	3.9	0.005	0.82	0.0	0.05	14.72	0.00	2.175	9.88	0.43	14.4	84.5	1.1	-3.63	1.12	0.48	0.87	2.58	13356	1734	6	0	0	0	0	logfile
✔	6VW2	21410	2023-02-16	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.004	0.83	0.0	0.05	14.71	0.00	2.227	13.08	0.00	15.5	84.5	0.0	-4.88	0.43	0.39	0.70	1.67	1800	240	10	0	0	0	0	logfile
✔	7SHE	25125	2023-02-18	2021-10-08	3.4	2.32	—	3.2	0.013	1.85	28.0	0.28	16.32	0.01	1.502	17.94	1.41	14.1	84.0	1.9	-4.29	0.69	0.67	1.18	3.2	0.004	0.77	0.0	0.04	16.36	0.01	2.157	8.97	0.24	14.8	84.5	0.7	-2.98	1.46	0.78	0.81	1.80	8990	1081	4	0	24	0	0	logfile
✔	6ZD0	11172	2023-02-18	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	4.5	0.003	0.78	0.0	0.04	5.38	0.00	2.341	5.89	0.00	15.0	84.6	0.4	-4.68	2.32	0.61	0.58	—	7962	1611	6	0	0	0	0	logfile
✔	7DXi	30910	2023-02-17	2021-01-19	3.53	3.60	—	3.6	0.006	1.30	0.0	0.06	15.06	0.01	1.468	4.71	0.30	13.9	85.5	0.6	-5.04	0.73	0.81	3.68	3.6	0.004	0.79	0.0	0.04	16.58	0.01	2.187	10.75	0.89	15.4	84.6	0.0	-2.54	0.49	0.73	0.81	2.79	6130	742	4	0	2	0	0	logfile

• ← previous
• Page 6 of 353
• next →