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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7E23 | 30950 | 2023-02-17 | 2021-02-04 | 3.3 | 3.62 | — | 3.6 | 0.004 | 0.82 | 0.0 | 0.05 | 14.42 | 0.01 | 2.123 | 14.37 | 0.00 | 17.3 | 82.7 | 0.0 | -3.70 | 0.70 | 0.77 | 2.78 | 3.6 | 0.003 | 0.73 | 0.0 | 0.05 | 16.29 | 0.00 | 2.170 | 13.39 | 0.30 | 16.0 | 84.0 | 0.0 | -3.11 | 1.16 | 0.71 | 0.80 | 1.67 | 3133 | 403 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oKS | 20103 | 2023-02-20 | 2019-04-15 | 4.2 | 4.44 | — | 4.3 | 0.008 | 1.15 | 0.0 | 0.05 | 17.36 | 0.01 | 2.299 | 5.88 | 9.80 | 18.3 | 81.7 | 0.0 | -5.50 | 0.78 | 0.81 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 14.37 | 0.01 | 2.223 | 15.59 | 0.00 | 16.0 | 84.0 | 0.0 | -4.93 | 2.23 | 0.79 | 0.82 | — | 13244 | 1610 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-02-21 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 14.03 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.89 | 0.0 | 0.04 | 17.39 | 0.01 | 2.066 | 20.20 | 0.88 | 15.6 | 84.1 | 0.3 | -4.03 | 1.62 | 0.62 | 0.67 | 0.65 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-02-18 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.23 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NY3 | 8980 | 2023-02-19 | 2019-02-10 | 3.7 | 4.08 | — | 4.0 | 0.009 | 1.13 | 0.0 | 0.06 | 19.98 | 0.01 | 2.251 | 4.71 | 0.33 | 16.9 | 82.5 | 0.6 | -5.84 | 0.76 | 0.84 | 1.41 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 19.90 | 0.00 | 2.137 | 9.68 | 0.66 | 15.7 | 84.1 | 0.1 | -1.78 | 1.01 | 0.66 | 0.77 | 0.74 | 10214 | 794 | 4 | 164 | 121 | 0 | 0 | logfile |
✔ | 7JSE | 22451 | 2023-02-20 | 2020-08-14 | 4.6 | 5.13 | — | 4.2 | 0.001 | 0.38 | 0.0 | 0.02 | 10.51 | 0.00 | 2.425 | 0.00 | 0.00 | 11.4 | 88.0 | 0.6 | -2.68 | 0.79 | 0.50 | — | 3.8 | 0.006 | 1.04 | 0.0 | 0.08 | 14.36 | 0.00 | 2.181 | 8.70 | 0.00 | 15.8 | 84.2 | 0.0 | -2.47 | 2.74 | 0.84 | 0.74 | — | 13288 | 3168 | 24 | 32 | 0 | 0 | 0 | logfile |
✔ | 7JMN | 22397 | 2023-02-21 | 2020-08-02 | 3.58 | 3.99 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 14.64 | 0.01 | 2.115 | 11.04 | 0.07 | 19.3 | 80.2 | 0.6 | -5.81 | 0.79 | 0.78 | 1.61 | 3.8 | 0.003 | 0.84 | 0.0 | 0.04 | 16.33 | 0.00 | 2.188 | 10.21 | 0.21 | 15.5 | 84.2 | 0.3 | -3.53 | 1.24 | 0.78 | 0.77 | 1.31 | 13633 | 1756 | 5 | 0 | 52 | 0 | 0 | logfile |
✔ | 7KVE | 23048 | 2023-02-20 | 2020-11-27 | 3.3 | 3.69 | 3.38 | 3.6 | 0.005 | 0.82 | 2.0 | 0.05 | 14.67 | 0.00 | 2.204 | 17.23 | 0.57 | 18.2 | 81.4 | 0.4 | -5.88 | 0.75 | 0.73 | 2.61 | 3.6 | 0.004 | 0.75 | 0.0 | 0.05 | 16.56 | 0.01 | 2.115 | 14.36 | 0.33 | 15.8 | 84.2 | 0.0 | -4.11 | 1.22 | 0.75 | 0.74 | 2.41 | 11142 | 1374 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QX7 | 4662 | 2023-02-25 | 2019-03-07 | 3.8 | 3.98 | — | 3.9 | 0.006 | 1.16 | 0.0 | 0.06 | 11.55 | 0.01 | 0.726 | 11.76 | 1.75 | 14.3 | 84.1 | 1.6 | -4.94 | 0.63 | 0.59 | 1.19 | 3.9 | 0.004 | 0.94 | 0.0 | 0.05 | 17.09 | 0.01 | 2.061 | 21.16 | 0.77 | 15.3 | 84.3 | 0.4 | -2.07 | 1.16 | 0.66 | 0.59 | 0.63 | 25164 | 3072 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PiF | 20349 | 2023-02-26 | 2019-06-26 | 3.4 | 3.57 | 3.44 | 3.5 | 0.014 | 1.74 | 2.0 | 0.09 | 16.21 | 0.00 | 1.256 | 6.99 | 2.17 | 14.8 | 81.3 | 3.9 | -4.83 | 0.64 | 0.76 | 2.73 | 3.5 | 0.003 | 0.84 | 1.0 | 0.04 | 16.97 | 0.00 | 2.121 | 11.67 | 0.49 | 15.1 | 84.4 | 0.5 | -2.75 | 1.58 | 0.72 | 0.85 | 2.23 | 28954 | 3448 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 7V48 | 31703 | 2023-02-16 | 2021-08-12 | 3.0 | 2.27 | — | 3.3 | 0.002 | 0.48 | 0.0 | 0.05 | 12.91 | 0.00 | 2.295 | 8.64 | 0.00 | 9.8 | 90.2 | 0.0 | -5.61 | 0.37 | 0.75 | 4.10 | 3.3 | 0.003 | 0.65 | 0.0 | 0.05 | 14.23 | 0.00 | 2.197 | 4.51 | 4.17 | 15.6 | 84.4 | 0.0 | -5.01 | 0.50 | 0.39 | 0.76 | 4.74 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLP | 6731 | 2023-02-19 | 2017-05-11 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.36 | 0.0 | 0.06 | 14.75 | 0.01 | 2.194 | 12.48 | 0.57 | 18.2 | 81.4 | 0.5 | -5.53 | 0.62 | 0.58 | — | 4.1 | 0.003 | 0.91 | 0.0 | 0.04 | 15.84 | 0.01 | 1.956 | 18.56 | 0.11 | 15.4 | 84.4 | 0.2 | -3.85 | 2.41 | 0.65 | 0.63 | — | 9952 | 1343 | 6 | 24 | 0 | 0 | 0 | logfile |
✔ | 7XJX | 33236 | 2023-02-16 | 2022-04-18 | 2.7 | 2.78 | 1.76 | 2.9 | 0.008 | 0.81 | 0.0 | 0.06 | 12.77 | 0.00 | 2.438 | 12.63 | 0.00 | 16.4 | 83.6 | 0.0 | -5.02 | 0.48 | 0.81 | 4.92 | 2.9 | 0.006 | 0.81 | 0.0 | 0.05 | 14.46 | 0.00 | 2.387 | 11.15 | 3.70 | 15.6 | 84.4 | 0.0 | -3.69 | 1.14 | 0.45 | 0.81 | 5.25 | 2628 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-02-23 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.4 | 0.004 | 1.03 | 0.0 | 0.05 | 13.74 | 0.01 | 2.093 | 29.26 | 0.00 | 14.4 | 84.4 | 1.2 | -3.64 | 4.18 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JBH | 9790 | 2023-02-18 | 2019-01-25 | 3.94 | 4.06 | — | 4.0 | 0.007 | 1.23 | 0.0 | 0.07 | 12.50 | 0.03 | 2.260 | 5.98 | 0.53 | 14.3 | 85.5 | 0.2 | -5.84 | 0.68 | 0.81 | 2.48 | 4.0 | 0.004 | 0.96 | 0.0 | 0.05 | 16.03 | 0.00 | 2.205 | 14.14 | 0.85 | 15.5 | 84.5 | 0.0 | -2.08 | 0.98 | 0.68 | 0.81 | 2.06 | 8592 | 1062 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6i5T | 4418 | 2023-02-20 | 2018-11-14 | 3.9 | 3.96 | — | 3.9 | 0.006 | 1.11 | 0.0 | 0.06 | 10.10 | 0.01 | 2.362 | 4.19 | 0.43 | 15.1 | 84.2 | 0.7 | -5.80 | 0.47 | 0.85 | 3.20 | 3.9 | 0.005 | 0.82 | 0.0 | 0.05 | 14.72 | 0.00 | 2.175 | 9.88 | 0.43 | 14.4 | 84.5 | 1.1 | -3.63 | 1.12 | 0.48 | 0.87 | 2.58 | 13356 | 1734 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VW2 | 21410 | 2023-02-16 | 2020-02-18 | 3.4 | 3.62 | — | 3.8 | 0.006 | 1.13 | 0.0 | 0.06 | 14.20 | 0.01 | 2.292 | 24.13 | 0.00 | 27.3 | 72.7 | 0.0 | -4.46 | 0.42 | 0.71 | 2.71 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 2.227 | 13.08 | 0.00 | 15.5 | 84.5 | 0.0 | -4.88 | 0.43 | 0.39 | 0.70 | 1.67 | 1800 | 240 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SHE | 25125 | 2023-02-18 | 2021-10-08 | 3.4 | 2.32 | — | 3.2 | 0.013 | 1.85 | 28.0 | 0.28 | 16.32 | 0.01 | 1.502 | 17.94 | 1.41 | 14.1 | 84.0 | 1.9 | -4.29 | 0.69 | 0.67 | 1.18 | 3.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.36 | 0.01 | 2.157 | 8.97 | 0.24 | 14.8 | 84.5 | 0.7 | -2.98 | 1.46 | 0.78 | 0.81 | 1.80 | 8990 | 1081 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2023-02-18 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.04 | 5.38 | 0.00 | 2.341 | 5.89 | 0.00 | 15.0 | 84.6 | 0.4 | -4.68 | 2.32 | 0.61 | 0.58 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DXi | 30910 | 2023-02-17 | 2021-01-19 | 3.53 | 3.60 | — | 3.6 | 0.006 | 1.30 | 0.0 | 0.06 | 15.06 | 0.01 | 1.468 | 4.71 | 0.30 | 13.9 | 85.5 | 0.6 | -5.04 | 0.73 | 0.81 | 3.68 | 3.6 | 0.004 | 0.79 | 0.0 | 0.04 | 16.58 | 0.01 | 2.187 | 10.75 | 0.89 | 15.4 | 84.6 | 0.0 | -2.54 | 0.49 | 0.73 | 0.81 | 2.79 | 6130 | 742 | 4 | 0 | 2 | 0 | 0 | logfile |