Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EG6	31106	2023-04-22	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.64	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.55	0.0	0.03	28.24	0.00	2.190	5.69	0.16	1.7	98.3	0.0	3.31	1.16	0.89	0.88	2.59	12118	779	11	292	0	0	0	logfile
✔	7Si6	25138	2023-04-22	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.003	0.85	0.0	0.04	14.76	0.00	1.919	4.22	0.41	1.7	98.3	0.0	2.52	0.39	0.52	0.82	1.82	13515	873	1	0	2	0	6910	logfile
✔	6X3W	22035	2023-04-24	2020-05-21	3.3	3.32	3.16	3.3	0.008	1.16	1.0	0.08	13.45	0.01	2.211	5.55	0.85	4.3	95.7	0.0	-2.06	0.73	0.86	3.98	3.3	0.004	0.62	0.0	0.04	15.44	0.00	2.149	9.68	0.53	3.9	96.1	0.0	0.01	0.48	0.74	0.89	3.49	17399	2121	17	0	25	0	0	logfile
✔	6ZFo	11184	2023-04-24	2020-06-17	4.4	4.43	—	4.4	0.003	0.56	0.0	0.04	10.41	0.00	2.157	3.58	1.30	4.5	95.5	0.0	-0.66	0.49	0.51	—	4.4	0.003	0.60	0.0	0.04	11.46	0.00	1.946	11.31	0.00	5.3	94.7	0.0	-1.00	1.56	0.53	0.59	—	18988	1252	8	0	2	0	9310	logfile
✔	7oiU	12933	2023-04-22	2021-05-12	3.7	4.05	3.71	3.8	0.004	0.68	0.0	0.04	12.59	0.00	2.059	10.44	0.00	4.8	95.2	0.0	-0.19	0.73	0.77	2.53	3.8	0.003	0.62	0.0	0.04	14.54	0.00	2.143	10.23	0.41	5.1	94.9	0.0	0.01	0.38	0.73	0.78	2.08	12744	1683	6	0	0	0	0	logfile
✔	6J9E	9785	2023-04-27	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.31	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.004	0.62	0.0	0.04	16.64	0.00	1.998	6.84	0.54	3.7	96.3	0.0	0.16	0.63	0.80	0.84	1.55	24427	3203	11	63	3	0	0	logfile
✔	6XJB	22205	2023-04-21	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.64	0.0	0.04	15.19	0.00	2.043	13.87	0.19	7.8	92.2	0.0	-1.33	1.82	0.88	0.85	2.02	10070	1277	1	0	0	0	0	logfile
✔	7E7B	30998	2023-04-28	2021-02-25	2.6	2.79	—	2.7	0.011	0.95	3.0	0.07	15.09	0.02	2.198	4.93	5.49	3.6	96.4	0.0	-2.02	0.83	0.87	4.58	2.7	0.003	0.57	0.0	0.04	15.48	0.00	2.168	4.28	1.49	2.7	97.3	0.0	-0.23	0.43	0.82	0.88	4.25	27363	3306	48	0	99	36	0	logfile
✔	7CKQ	30390	2023-04-28	2020-07-18	4.4	4.50	—	4.4	0.003	0.69	0.0	0.05	15.78	0.01	2.153	5.20	0.30	5.6	94.4	0.0	-4.73	0.76	0.63	—	4.4	0.003	0.70	0.0	0.04	15.81	0.00	1.934	16.24	0.08	6.2	93.7	0.0	-1.70	0.95	0.81	0.73	—	27484	3588	14	87	5	0	0	logfile
✔	7DTV	30855	2023-04-22	2021-01-06	3.5	3.53	—	3.5	0.008	0.94	0.0	0.07	14.93	0.01	2.189	5.29	0.00	9.8	90.1	0.1	-4.67	0.75	0.83	2.62	3.5	0.003	0.57	0.0	0.04	15.44	0.00	2.190	5.29	0.11	7.2	92.8	0.0	-1.10	0.43	0.73	0.78	2.40	11276	1560	8	0	22	0	0	logfile
✔	6B70	7062	2023-04-26	2017-10-03	3.7	4.28	4.09	4.1	0.011	1.26	0.0	0.07	11.30	0.01	2.192	6.22	0.00	4.0	96.0	0.0	-3.94	0.89	0.80	2.01	4.1	0.003	0.73	0.0	0.04	14.33	0.00	2.173	11.10	0.00	5.5	94.5	0.0	-0.47	0.78	0.89	0.81	1.39	22192	2783	8	0	0	0	0	logfile
✔	7P0Z	13153	2023-04-22	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7Z6V	14531	2023-04-28	2022-03-14	3.1	3.16	3.00	3.1	0.010	1.64	30.0	0.14	13.33	0.02	1.932	8.12	0.45	2.8	97.1	0.1	-0.18	0.74	0.86	3.02	3.1	0.005	0.64	0.0	0.04	15.41	0.00	2.173	6.95	0.17	2.9	97.1	0.0	0.50	0.67	0.77	0.83	2.92	27154	3360	28	0	66	0	0	logfile
✔	7Si7	25139	2023-04-22	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.002	0.92	0.0	0.04	15.00	0.00	1.950	5.49	0.17	3.1	96.9	0.0	2.10	0.51	0.51	0.83	0.96	11287	728	1	0	2	0	5777	logfile
✔	7JV4	22492	2023-04-27	2020-08-20	3.4	3.60	3.45	3.5	0.012	1.40	1.0	0.09	9.65	0.01	2.412	0.47	0.10	2.5	97.5	0.0	0.74	0.77	0.78	3.10	3.5	0.003	0.57	0.0	0.04	12.47	0.00	2.228	6.01	0.19	2.7	97.3	0.0	0.74	1.21	0.80	0.83	3.03	25162	3568	23	0	58	0	0	logfile
✔	7K4N	22668	2023-04-27	2020-09-15	3.3	3.50	3.37	3.4	0.013	1.41	0.0	0.09	9.54	0.01	2.431	0.43	0.00	2.7	97.3	0.0	0.95	0.80	0.80	4.31	3.4	0.004	0.61	0.0	0.05	13.06	0.00	2.214	5.51	0.31	2.3	97.7	0.0	0.99	0.57	0.83	0.85	3.78	25353	3654	27	0	63	0	0	logfile
✔	7RY3	24732	2023-04-26	2021-08-24	2.91	2.59	—	2.7	0.012	1.59	14.0	0.14	12.55	0.01	2.293	5.53	3.21	1.6	98.4	0.1	0.46	0.57	0.73	2.26	2.7	0.004	0.74	0.0	0.05	16.72	0.00	2.067	8.74	2.67	1.7	98.3	0.0	1.55	0.61	0.69	0.82	2.23	23964	3140	3	0	1	0	0	logfile
✔	6HUP	0283	2023-04-23	2018-10-09	3.58	3.70	3.52	3.6	0.013	1.19	0.0	0.08	8.93	0.01	2.251	5.90	0.00	4.9	95.1	0.0	-3.42	0.72	0.85	3.56	3.6	0.003	0.63	0.0	0.04	14.77	0.00	2.148	11.20	0.43	3.7	96.3	0.0	-0.24	1.95	0.73	0.85	3.03	15265	1808	17	0	37	0	0	logfile
✔	7FCD	31524	2023-04-27	2021-07-14	3.9	4.04	—	3.9	0.009	1.13	1.0	0.08	12.54	0.02	2.103	10.36	2.09	7.9	91.9	0.2	-2.64	0.81	0.78	1.68	3.9	0.004	0.64	0.0	0.04	13.80	0.00	2.104	10.88	0.34	6.0	94.0	0.0	-1.15	1.25	0.83	0.81	1.41	24444	3055	6	0	35	0	0	logfile
✔	7B5M	12040	2023-04-22	2020-12-05	3.91	4.16	3.79	3.9	0.005	0.87	1.0	0.05	15.58	0.01	2.001	15.24	0.22	10.2	89.8	0.0	-2.61	0.83	0.79	1.50	3.9	0.003	0.67	1.0	0.04	16.87	0.00	2.066	15.68	0.36	8.6	91.4	0.0	-0.99	0.48	0.83	0.79	1.36	12530	1561	10	0	5	0	0	logfile

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