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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Y67 | 33636 | 2024-03-15 | 2022-06-18 | 2.8 | 2.24 | 2.75 | 2.1 | 0.003 | 0.69 | 0.0 | 0.04 | 13.09 | 0.01 | 1.877 | 7.05 | 0.10 | 2.5 | 97.5 | 0.0 | 0.59 | 0.78 | 0.77 | 2.53 | 2.1 | 0.003 | 0.56 | 0.0 | 0.04 | 16.45 | 0.00 | 2.176 | 5.24 | 1.98 | 3.6 | 96.4 | 0.0 | 0.70 | 0.43 | 0.80 | 0.82 | 2.44 | 8889 | 1135 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7S8P | 24900 | 2024-03-11 | 2021-09-18 | 2.6 | 2.11 | 2.62 | 1.8 | 0.005 | 0.75 | 0.0 | 0.05 | 12.74 | 0.00 | 2.183 | 3.18 | 0.00 | 5.8 | 94.2 | 0.0 | -2.01 | 0.73 | 0.75 | 4.73 | 1.8 | 0.004 | 0.66 | 0.0 | 0.04 | 15.26 | 0.00 | 2.127 | 3.24 | 3.11 | 5.3 | 94.7 | 0.0 | 0.36 | 0.36 | 0.84 | 0.84 | 3.96 | 8093 | 1089 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2024-03-15 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.57 | 0.0 | 0.03 | 10.45 | 0.00 | 2.097 | 10.54 | 0.00 | 5.1 | 94.9 | 0.0 | -0.33 | 1.45 | 0.40 | 0.72 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 7ME0 | 23786 | 2024-03-22 | 2021-04-06 | 2.48 | 2.69 | 2.55 | 2.6 | 0.006 | 0.55 | 0.0 | 0.05 | 14.32 | 0.00 | 2.135 | 5.82 | 4.96 | 2.0 | 98.0 | 0.0 | -0.22 | 0.82 | 0.90 | 5.65 | 2.6 | 0.004 | 0.57 | 0.0 | 0.05 | 15.33 | 0.00 | 2.213 | 6.27 | 2.73 | 1.9 | 98.1 | 0.0 | 0.20 | 2.52 | 0.85 | 0.92 | 5.67 | 16386 | 2082 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CBL | 30335 | 2024-03-20 | 2020-06-12 | 2.8 | 3.16 | — | 3.1 | 0.006 | 0.59 | 0.0 | 0.05 | 14.82 | 0.00 | 2.161 | 5.24 | 5.25 | 3.0 | 96.8 | 0.2 | -2.55 | 0.78 | 0.87 | 2.70 | 3.1 | 0.006 | 0.62 | 0.0 | 0.05 | 16.01 | 0.00 | 2.128 | 5.87 | 4.08 | 3.8 | 96.2 | 0.0 | -0.71 | 0.41 | 0.74 | 0.87 | 2.58 | 99242 | 13364 | 78 | 0 | 26 | 0 | 0 | logfile |
✔ | 6TY9 | 20582 | 2024-03-16 | 2019-08-08 | 2.9 | 2.98 | — | 2.9 | 0.009 | 0.72 | 0.0 | 0.04 | 15.29 | 0.00 | 1.980 | 5.88 | 0.20 | 3.6 | 96.4 | 0.0 | -4.19 | 0.60 | 0.88 | 4.04 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 16.86 | 0.00 | 1.960 | 5.39 | 2.69 | 2.9 | 97.1 | 0.0 | 0.07 | 0.48 | 0.57 | 0.89 | 3.20 | 14559 | 1709 | 6 | 38 | 5 | 0 | 0 | logfile |
✔ | 8F2S | 28826 | 2024-03-17 | 2022-11-08 | 2.9 | 3.73 | 2.80 | 3.3 | 0.015 | 0.82 | 0.0 | 0.18 | 17.66 | 0.00 | 2.129 | 3.82 | 0.00 | 4.3 | 95.7 | 0.0 | 0.98 | 0.81 | 0.89 | 4.25 | 3.4 | 0.003 | 0.69 | 0.0 | 0.08 | 15.74 | 0.00 | 2.244 | 5.36 | 0.75 | 2.4 | 97.6 | 0.0 | 1.97 | 0.35 | 0.77 | 0.85 | 3.56 | 17158 | 2023 | 15 | 0 | 38 | 0 | 0 | logfile |
✔ | 7K5X | 22683 | 2024-03-18 | 2020-09-17 | 2.93 | 3.28 | — | 3.2 | 0.004 | 0.60 | 0.0 | 0.04 | 26.26 | 0.00 | 2.211 | 5.79 | 0.09 | 2.2 | 97.8 | 0.0 | 1.31 | 0.76 | 0.82 | 3.15 | 3.2 | 0.004 | 0.60 | 0.0 | 0.03 | 27.25 | 0.00 | 2.169 | 6.39 | 2.73 | 2.5 | 97.5 | 0.0 | 1.76 | 1.40 | 0.79 | 0.86 | 2.34 | 18291 | 1296 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7XBK | 33104 | 2024-03-20 | 2022-03-21 | 3.7 | 2.43 | 3.78 | 1.9 | 0.005 | 0.86 | 0.0 | 0.05 | 16.04 | 0.01 | 2.095 | 5.74 | 0.00 | 2.9 | 97.0 | 0.0 | -1.71 | 0.69 | 0.63 | 1.49 | 1.8 | 0.004 | 0.70 | 0.0 | 0.04 | 17.72 | 0.00 | 1.826 | 16.40 | 2.71 | 2.4 | 97.6 | 0.0 | 0.27 | 0.72 | 0.69 | 0.69 | 1.56 | 25745 | 3139 | 19 | 0 | 33 | 0 | 0 | logfile |
✔ | 8PPo | 17806 | 2024-03-10 | 2023-07-07 | 2.0 | 2.30 | 1.95 | 2.2 | 0.008 | 1.20 | 1.0 | 0.07 | 13.41 | 0.01 | 2.625 | 0.29 | 0.00 | 6.7 | 93.3 | 0.0 | 0.71 | 0.58 | 0.84 | 6.50 | 2.2 | 0.004 | 0.53 | 0.0 | 0.06 | 14.00 | 0.00 | 2.289 | 0.29 | 0.52 | 0.0 | 100.0 | 0.0 | 1.18 | 0.37 | 0.50 | 0.88 | 5.44 | 1696 | 240 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FKQ | 29253 | 2024-03-19 | 2022-12-21 | 2.76 | 3.11 | 2.87 | 3.0 | 0.003 | 0.55 | 0.0 | 0.03 | 20.66 | 0.00 | 2.001 | 1.93 | 0.02 | 1.1 | 98.9 | 0.0 | 1.47 | 0.77 | 0.82 | 3.34 | 3.0 | 0.006 | 0.61 | 0.0 | 0.04 | 20.91 | 0.00 | 1.966 | 5.67 | 1.48 | 2.1 | 97.9 | 0.0 | 0.87 | 0.41 | 0.79 | 0.88 | 3.16 | 93805 | 6882 | 52 | 1784 | 53 | 0 | 0 | logfile |
✔ | 8EoW | 28487 | 2024-03-19 | 2022-10-04 | 3.9 | 4.29 | 3.96 | 4.2 | 0.003 | 0.57 | 0.0 | 0.04 | 16.05 | 0.00 | 2.211 | 8.15 | 0.35 | 4.0 | 96.0 | 0.0 | 1.45 | 0.65 | 0.72 | 1.03 | 4.2 | 0.005 | 0.71 | 0.0 | 0.04 | 16.69 | 0.00 | 2.134 | 10.82 | 4.85 | 5.3 | 94.7 | 0.0 | 1.15 | 0.33 | 0.67 | 0.77 | 1.03 | 24628 | 3372 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XP5 | 33365 | 2024-03-11 | 2022-05-03 | 3.08 | 2.39 | 3.13 | 2.1 | 0.004 | 0.59 | 0.0 | 0.04 | 12.66 | 0.00 | 2.198 | 8.66 | 0.00 | 3.1 | 96.9 | 0.0 | 1.69 | 0.74 | 0.75 | 2.94 | 2.1 | 0.004 | 0.59 | 0.0 | 0.04 | 15.44 | 0.00 | 2.113 | 8.66 | 2.84 | 3.2 | 96.8 | 0.0 | 1.66 | 1.10 | 0.75 | 0.78 | 2.21 | 8381 | 1059 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FMG | 3231 | 2024-03-23 | 2015-11-04 | 3.6 | 3.39 | — | 3.4 | 0.012 | 1.50 | 0.0 | 0.06 | 9.53 | 0.01 | 2.110 | 20.79 | 0.29 | 5.1 | 93.8 | 1.1 | -2.35 | 0.66 | 0.69 | 2.91 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 14.93 | 0.00 | 2.084 | 14.46 | 4.63 | 3.2 | 96.8 | 0.0 | -0.24 | 1.65 | 0.69 | 0.71 | 1.46 | 39334 | 5716 | 30 | 0 | 2 | 0 | 0 | logfile |
✔ | 8EJL | 28186 | 2024-03-18 | 2022-09-17 | 3.9 | 4.30 | 3.90 | 4.1 | 0.005 | 0.54 | 0.0 | 0.04 | 11.63 | 0.00 | 0.636 | 9.14 | 3.04 | 2.2 | 97.8 | 0.0 | 1.75 | 0.68 | 0.85 | 1.79 | 4.1 | 0.004 | 0.64 | 0.0 | 0.04 | 14.81 | 0.00 | 2.124 | 10.08 | 2.86 | 2.4 | 97.6 | 0.0 | 2.14 | 0.56 | 0.68 | 0.85 | 1.34 | 22155 | 3095 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6P49 | 20247 | 2024-03-14 | 2019-05-26 | 3.3 | 3.60 | 3.10 | 3.6 | 0.007 | 1.50 | 0.0 | 0.08 | 16.18 | 0.01 | 2.164 | 18.26 | 3.28 | 6.9 | 92.4 | 0.7 | -6.27 | 0.54 | 0.57 | 1.13 | 3.6 | 0.003 | 0.84 | 0.0 | 0.05 | 16.96 | 0.00 | 2.119 | 16.12 | 3.47 | 11.2 | 88.8 | 0.0 | -3.25 | 1.74 | 0.55 | 0.59 | 0.97 | 9576 | 1166 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7WYB | 32890 | 2024-03-11 | 2022-02-15 | 2.97 | 2.33 | — | 2.1 | 0.005 | 0.80 | 0.0 | 0.05 | 12.35 | 0.00 | 2.176 | 5.06 | 0.00 | 7.0 | 93.0 | 0.0 | -1.33 | 0.66 | 0.61 | 1.67 | 2.1 | 0.002 | 0.63 | 0.0 | 0.04 | 15.04 | 0.00 | 2.203 | 9.54 | 0.84 | 4.8 | 95.2 | 0.0 | 0.09 | 0.41 | 0.66 | 0.62 | 1.23 | 8757 | 1115 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PF5 | 13368 | 2024-03-16 | 2021-08-11 | 3.8 | 4.51 | — | 3.4 | 0.006 | 0.89 | 0.0 | 0.05 | 28.94 | 0.01 | 2.264 | 6.06 | 0.00 | 1.8 | 98.2 | 0.0 | -0.59 | 0.87 | 0.80 | 0.89 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 28.73 | 0.00 | 2.129 | 17.28 | 1.15 | 2.3 | 97.7 | 0.0 | 1.08 | 1.24 | 0.87 | 0.81 | 0.67 | 13470 | 843 | 11 | 334 | 0 | 0 | 0 | logfile |
✔ | 7K63 | 22687 | 2024-03-18 | 2020-09-18 | 3.03 | 3.30 | — | 3.2 | 0.004 | 0.62 | 0.0 | 0.04 | 26.72 | 0.00 | 2.158 | 6.92 | 0.09 | 2.0 | 98.0 | 0.0 | 0.98 | 0.76 | 0.80 | 3.33 | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 27.16 | 0.00 | 2.186 | 7.04 | 1.99 | 2.7 | 97.3 | 0.0 | 1.77 | 0.40 | 0.79 | 0.84 | 2.77 | 18330 | 1298 | 13 | 394 | 0 | 0 | 0 | logfile |
✔ | 7NYU | 12654 | 2024-03-23 | 2021-03-23 | 3.8 | 3.88 | 4.17 | 3.9 | 0.005 | 0.86 | 0.0 | 0.05 | 13.98 | 0.01 | 2.097 | 4.70 | 0.82 | 3.3 | 96.7 | 0.0 | -1.67 | 0.52 | 0.59 | 0.84 | 3.8 | 0.003 | 0.80 | 0.0 | 0.04 | 16.82 | 0.00 | 2.122 | 16.51 | 3.97 | 3.9 | 96.1 | 0.0 | 0.09 | 1.84 | 0.56 | 0.63 | 0.71 | 35228 | 4618 | 18 | 0 | 11 | 0 | 0 | logfile |