Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WSM	32760	2023-11-13	2022-01-30	3.25	3.65	—	3.6	0.011	1.41	0.0	0.05	16.83	0.01	2.253	11.36	0.81	6.5	93.5	0.0	-1.23	0.62	0.82	1.57	3.6	0.003	0.77	0.0	0.04	17.01	0.01	2.222	8.62	0.00	3.9	96.1	0.0	0.82	0.51	0.61	0.82	1.21	3577	464	3	0	3	0	0	logfile
✔	8G88	29843	2023-11-16	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.005	0.67	0.0	0.04	29.46	0.00	2.058	27.11	0.00	2.3	97.7	0.0	1.56	2.55	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	7PBW	13307	2023-11-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7RRA	24657	2023-11-14	2021-08-09	4.4	4.79	—	3.5	0.003	0.59	0.0	0.04	13.75	0.00	2.261	9.42	0.00	3.0	97.0	0.0	1.98	0.62	0.57	—	3.5	0.003	0.62	0.0	0.04	13.95	0.00	2.142	14.85	0.00	4.1	95.9	0.0	1.58	1.89	0.65	0.62	—	9608	1204	2	0	0	0	0	logfile
✔	8G8B	29845	2023-11-16	2023-02-17	4.3	7.82	4.33	3.2	0.004	0.64	0.0	0.04	29.04	0.00	2.061	8.20	1.98	1.8	98.1	0.1	1.94	0.87	0.75	—	3.2	0.005	0.68	0.0	0.04	28.83	0.00	2.167	22.64	0.00	2.8	97.2	0.0	1.33	1.93	0.90	0.81	—	14067	902	11	336	0	0	0	logfile
✔	5G06	3366	2023-11-19	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	6DMW	7967	2023-11-17	2018-06-05	4.4	4.49	—	4.4	0.006	1.02	0.0	0.05	11.36	0.01	2.253	6.75	0.18	4.0	96.0	0.0	-3.38	0.59	0.66	—	4.4	0.003	0.70	0.0	0.04	13.15	0.00	2.206	8.67	0.00	3.2	96.8	0.0	0.54	0.95	0.72	0.84	—	20546	2562	6	0	3	0	0	logfile
✔	7o17	12692	2023-11-15	2021-03-28	4.5	4.66	—	4.2	0.007	1.22	0.0	0.07	16.51	0.01	2.089	10.97	1.09	9.8	90.2	0.0	-5.33	0.78	0.83	—	4.2	0.003	0.76	0.0	0.04	14.39	0.00	1.928	23.91	0.00	8.0	92.0	0.0	-1.97	0.57	0.78	0.83	—	11679	1531	7	0	4	0	0	logfile
✔	7TX6	26155	2023-11-13	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	12.44	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.003	0.71	1.0	0.05	15.51	0.01	2.189	6.37	0.00	3.3	96.7	0.0	1.64	1.61	0.53	0.77	2.32	3169	398	1	0	2	0	0	logfile
✔	7LV9	23530	2023-11-14	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.67	0.0	0.04	29.32	0.00	2.143	21.19	0.00	3.9	96.1	0.0	1.21	1.93	0.90	0.85	—	8238	581	8	190	0	0	0	logfile
✔	7NPU	12521	2023-11-17	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	7Ai5	11791	2023-11-15	2020-09-26	4.4	4.82	4.47	4.4	0.014	1.85	5.0	0.10	17.79	0.01	2.472	3.75	1.14	3.3	96.7	0.0	-2.02	0.86	0.70	—	4.3	0.003	0.66	0.0	0.04	16.95	0.00	2.155	14.39	0.00	2.1	97.9	0.0	0.17	0.95	0.89	0.78	—	13376	1576	6	44	2	0	0	logfile
✔	7YCH	33739	2023-11-14	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	14.59	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	15.50	0.00	1.805	31.05	0.00	0.0	0.0	0.0	—	0.90	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	6VXJ	21440	2023-11-14	2020-02-22	4.1	4.12	—	4.1	0.007	1.02	0.0	0.05	16.27	0.01	2.251	6.79	3.32	9.5	90.5	0.0	-5.74	0.57	0.78	—	4.1	0.006	0.89	0.0	0.05	13.89	0.00	2.100	15.36	0.00	9.4	90.6	0.0	-2.29	0.73	0.58	0.80	—	8895	1132	4	0	3	0	0	logfile
✔	7PDG	13337	2023-11-14	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	8B0M	15788	2023-11-14	2022-09-07	3.01	3.39	3.03	3.3	0.003	0.66	0.0	0.04	10.77	0.00	2.258	5.92	0.48	5.7	94.3	0.0	-0.18	0.57	0.84	5.07	3.3	0.003	0.56	0.0	0.04	13.28	0.00	2.239	6.42	0.00	5.9	94.1	0.0	0.50	1.70	0.58	0.86	4.35	4015	508	1	0	1	0	0	logfile
✔	7E2C	30954	2023-11-18	2021-02-05	4.18	4.23	—	4.1	0.008	1.50	3.0	0.08	15.12	0.01	1.675	10.10	0.94	15.3	83.6	1.1	-5.41	0.78	0.68	—	4.1	0.003	0.77	1.0	0.05	14.06	0.00	2.118	12.98	0.00	13.0	86.7	0.2	-3.20	0.71	0.76	0.68	—	23020	3295	11	0	0	0	0	logfile
✔	8F7W	28911	2023-11-14	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.06	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.003	0.58	0.0	0.04	13.69	0.00	2.162	8.41	0.00	2.1	97.9	0.0	0.69	1.23	0.60	0.81	2.39	9087	1145	7	0	5	0	0	logfile
✔	6oGE	20055	2023-11-15	2019-04-02	4.36	4.64	—	4.4	0.008	1.16	0.0	0.06	10.69	0.01	2.203	12.45	0.16	13.5	86.4	0.1	-4.34	0.80	0.81	—	4.4	0.004	0.81	0.0	0.05	12.35	0.01	2.118	23.53	0.00	11.6	88.4	0.1	-2.97	0.90	0.80	0.80	—	11494	1489	7	0	9	0	0	logfile
✔	7KAP	22779	2023-11-15	2020-10-01	4.1	4.58	4.09	4.2	0.003	0.55	0.0	0.04	11.24	0.00	2.205	8.00	0.00	2.3	97.7	0.0	-1.05	0.62	0.83	—	4.2	0.003	0.60	0.0	0.04	12.31	0.00	2.187	9.26	0.00	2.9	97.1	0.0	2.08	0.64	0.64	0.85	—	10715	1342	7	0	56	0	0	logfile

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