Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6DBQ	7847	2023-04-25	2018-05-03	4.22	4.34	—	4.2	0.005	1.05	2.0	0.04	23.25	0.01	1.539	28.02	0.12	10.4	89.5	0.1	-4.19	0.81	0.82	—	4.2	0.004	0.74	0.0	0.04	21.84	0.00	1.691	20.03	0.00	6.5	93.4	0.1	-1.35	1.52	0.81	0.82	—	19956	1939	10	222	6	0	0	logfile
✔	6oFJ	20047	2023-04-21	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	5Z3V	6883	2023-04-24	2018-01-08	4.22	3.73	—	3.7	0.004	0.63	0.0	0.04	23.01	0.00	2.160	12.97	0.00	7.8	92.2	0.0	-2.72	0.69	0.74	—	3.7	0.004	0.66	0.0	0.04	24.67	0.00	2.130	12.01	0.00	4.7	95.2	0.2	0.43	0.85	0.70	0.72	—	16758	1339	12	292	3	0	0	logfile
✔	6DBo	7846	2023-04-24	2018-05-03	4.4	4.68	—	4.4	0.009	1.35	0.0	0.07	22.20	0.01	1.874	25.40	0.00	6.8	92.4	0.7	-4.15	0.86	0.82	—	4.4	0.004	0.78	0.0	0.04	19.66	0.00	2.126	20.40	0.00	4.8	95.2	0.0	-0.96	4.04	0.87	0.84	—	16820	1786	10	128	6	0	0	logfile
✔	5FN2	3237	2023-04-21	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.005	0.92	0.0	0.05	14.42	0.01	2.145	22.58	0.00	9.5	89.6	0.8	-1.02	1.11	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	6TNF	10531	2023-04-21	2019-12-07	3.8	2.90	3.67	2.7	0.032	1.64	0.0	0.32	19.07	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.6	0.005	1.03	0.0	0.08	13.61	0.01	2.106	13.33	0.00	19.1	80.8	0.1	-3.46	0.54	0.65	0.64	—	9559	2206	5	0	66	0	0	logfile
✔	7CYN	30501	2023-04-25	2020-09-03	4.2	5.28	—	4.4	0.002	0.52	0.0	0.04	12.56	0.00	2.204	9.21	0.09	5.6	94.4	0.1	-2.47	0.67	0.65	—	4.4	0.003	0.73	0.0	0.04	12.81	0.00	2.107	19.70	0.00	5.7	94.3	0.0	-0.47	1.48	0.73	0.81	—	20432	2538	8	0	6	0	0	logfile
✔	7SCY	25042	2023-04-26	2021-09-29	4.1	6.14	—	5.6	0.014	1.93	1.0	0.09	27.69	0.04	2.508	0.26	0.56	2.8	97.2	0.0	-0.81	0.82	0.67	—	5.5	0.009	0.77	0.0	0.05	27.61	0.01	1.778	29.96	0.00	5.4	94.6	0.0	-1.01	1.09	0.87	0.79	—	23206	850	11	294	0	0	10436	logfile
✔	7NL0	12453	2023-04-22	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.004	0.61	0.0	0.03	29.99	0.00	2.219	10.71	0.00	3.0	97.0	0.0	2.21	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	7D76	30602	2023-04-20	2020-10-03	3.1	3.39	—	3.4	0.008	0.79	0.0	0.05	13.86	0.01	2.167	8.33	0.00	4.7	95.3	0.0	-2.55	0.65	0.81	3.21	3.3	0.003	0.60	0.0	0.04	15.23	0.00	2.183	7.26	0.00	4.6	95.4	0.0	0.47	2.30	0.64	0.81	2.73	7015	874	6	0	7	0	0	logfile
✔	5Z3U	6882	2023-04-24	2018-01-08	4.31	4.01	—	3.9	0.011	0.98	0.0	0.05	24.03	0.01	2.030	18.98	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.004	0.64	0.0	0.04	24.58	0.00	2.048	11.49	0.00	5.1	94.9	0.0	0.12	0.79	0.75	0.77	—	16766	1341	12	292	3	0	0	logfile
✔	7Q2Z	13786	2023-04-20	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.97	0.00	2.121	3.33	0.00	2.8	97.1	0.1	2.11	1.23	0.70	0.86	1.84	8258	902	4	46	0	0	0	logfile
✔	7RPW	24624	2023-04-21	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.19	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.66	0.0	0.04	18.63	0.00	1.110	15.84	0.00	7.5	92.4	0.1	-3.06	3.75	0.77	0.67	—	10594	1179	10	62	5	0	0	logfile
✔	8C02	16353	2023-04-20	2022-12-15	4.09	4.26	4.03	4.2	0.004	0.83	0.0	0.04	13.16	0.01	2.225	19.86	0.44	4.1	95.9	0.0	1.51	0.58	0.77	—	4.2	0.004	0.79	0.0	0.04	13.27	0.00	2.201	17.06	0.00	4.3	95.7	0.0	1.78	1.54	0.58	0.77	—	4242	549	2	0	0	0	0	logfile
✔	6NYB	0541	2023-04-21	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	6.97	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.005	0.80	0.0	0.04	13.88	0.00	1.864	12.75	0.00	4.2	95.8	0.0	0.25	2.59	0.79	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	8DMB	27533	2023-04-23	2022-07-08	3.1	3.10	3.12	3.1	0.005	0.91	0.0	0.05	15.85	0.01	2.091	0.28	0.74	2.5	97.5	0.0	0.39	0.69	0.81	4.57	3.1	0.003	0.55	0.0	0.03	16.17	0.01	1.969	3.37	0.00	3.1	96.9	0.0	0.52	0.57	0.70	0.83	4.27	14225	328	5	275	2	0	5728	logfile
✔	6SXA	10337	2023-04-20	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	15.25	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.83	0.0	0.04	15.04	0.00	2.240	11.90	0.00	6.0	93.9	0.1	-0.30	1.73	0.91	0.85	0.41	7014	943	2	0	0	0	0	logfile
✔	7BZY	30263	2023-04-20	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.82	0.0	0.05	6.08	0.00	2.106	13.54	0.00	14.3	85.7	0.0	-3.30	1.23	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	6RVY	10018	2023-04-21	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.87	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.003	0.74	0.0	0.04	13.23	0.00	2.369	10.92	0.00	5.0	95.0	0.0	-0.04	0.72	0.64	0.80	—	9627	1290	3	0	0	0	0	logfile
✔	5UZ7	8623	2023-04-20	2017-02-24	4.1	4.03	—	4.0	0.008	1.17	0.0	0.06	11.04	0.01	2.267	7.82	0.37	4.4	95.6	0.0	-2.30	0.64	0.75	—	4.0	0.004	0.76	0.0	0.04	13.79	0.00	2.197	14.85	0.00	5.6	94.4	0.0	-0.38	1.40	0.67	0.78	—	7643	974	5	0	0	0	0	logfile

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