Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RTB	4996	2023-02-17	2019-05-22	3.46	3.57	—	3.5	0.009	1.23	0.0	0.07	15.08	0.01	2.122	6.27	2.61	18.9	80.9	0.2	-4.64	0.62	0.79	4.22	3.5	0.004	0.76	0.0	0.05	15.59	0.00	2.167	12.95	1.53	17.5	82.5	0.0	-4.08	0.60	0.62	0.80	3.79	4681	699	10	0	0	0	0	logfile
✔	7MLZ	23914	2023-02-17	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.78	0.0	0.05	12.84	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.003	0.77	0.0	0.05	15.31	0.00	2.004	16.26	0.37	15.1	84.7	0.2	-4.07	0.55	0.81	0.64	1.17	4864	624	4	0	5	0	0	logfile
✔	6L1T	0801	2023-02-18	2019-09-30	3.22	3.42	—	3.4	0.011	0.92	0.0	0.06	14.06	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.005	0.73	0.0	0.05	16.05	0.00	2.215	11.78	0.44	10.0	90.0	0.0	-4.06	1.41	0.49	0.86	3.50	7010	1000	10	0	0	0	0	logfile
✔	8BG9	16027	2023-02-16	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.0	0.006	0.76	0.0	0.05	15.60	0.00	2.264	7.60	0.00	10.5	89.5	0.0	-4.03	0.99	0.39	0.81	5.60	1692	222	6	0	0	0	0	logfile
✔	5XLo	6729	2023-02-21	2017-05-11	3.8	3.91	—	3.9	0.009	1.37	0.0	0.06	14.03	0.01	2.050	13.55	0.29	17.3	81.9	0.8	-6.02	0.58	0.64	0.55	3.9	0.004	0.89	0.0	0.04	17.39	0.01	2.066	20.20	0.88	15.6	84.1	0.3	-4.03	1.62	0.62	0.67	0.65	15413	2073	9	38	0	0	0	logfile
✔	6M1D	30041	2023-02-24	2020-02-25	4.5	6.53	—	4.6	0.005	1.20	0.0	0.06	18.16	0.01	2.043	20.63	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	4.6	0.005	1.04	0.0	0.05	14.90	0.01	0.441	31.91	0.00	11.3	88.3	0.4	-4.03	0.67	0.68	0.70	—	21776	2706	4	0	0	0	0	logfile
✔	7TD6	25824	2023-02-17	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.005	0.89	0.0	0.05	18.65	0.00	2.234	13.38	3.53	9.9	90.1	0.0	-4.01	1.10	0.43	0.78	3.81	5575	690	5	0	0	0	0	logfile
✔	7N9Y	24264	2023-02-18	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.45	0.00	2.547	7.13	0.00	19.3	80.3	0.4	-4.00	2.62	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7RFP	24444	2023-02-17	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	6LNi	0931	2023-02-17	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	7BW7	30229	2023-02-18	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.003	0.79	0.0	0.05	15.12	0.00	2.151	18.52	0.00	13.1	86.9	0.0	-3.97	0.75	0.70	0.62	—	8824	1091	3	0	0	0	0	logfile
✔	7V4A	31705	2023-02-16	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.003	0.60	0.0	0.05	16.38	0.00	2.347	6.77	0.61	11.8	88.2	0.0	-3.97	1.70	0.42	0.81	3.13	1653	240	3	0	0	0	0	logfile
✔	7PY2	13708	2023-02-16	2021-10-08	2.59	2.64	1.54	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.006	0.92	0.0	0.05	18.12	0.00	2.134	2.20	2.50	5.2	94.8	0.0	-3.96	1.38	0.49	0.88	5.69	2152	316	4	0	0	0	0	logfile
✔	5YYS	6859	2023-02-24	2017-12-11	4.2	4.57	—	4.1	0.016	2.26	0.0	0.10	15.30	0.01	2.201	22.76	2.34	27.3	70.1	2.6	-5.98	0.85	0.71	—	4.1	0.005	1.30	0.0	0.06	12.76	0.01	2.047	36.43	0.00	24.1	75.3	0.6	-3.96	1.66	0.87	0.73	—	24044	3244	4	0	0	0	0	logfile
✔	7Wi6	32526	2023-02-19	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	14.53	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.005	0.69	0.0	0.05	14.94	0.00	2.214	9.42	0.38	12.3	87.7	0.0	-3.96	0.43	0.76	0.78	1.95	9696	1446	4	0	4	0	0	logfile
✔	7oB4	12794	2023-02-19	2021-04-21	3.22	3.25	—	3.5	0.009	1.03	0.0	0.07	13.89	0.00	2.206	23.16	0.09	3.7	96.3	0.0	-4.30	0.54	0.78	4.06	3.5	0.006	0.75	0.0	0.05	15.20	0.00	2.116	18.99	0.64	7.1	92.9	0.0	-3.95	1.20	0.44	0.75	4.91	10066	1288	14	0	0	0	0	logfile
✔	6NYG	0543	2023-02-27	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.09	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.003	0.73	0.0	0.05	13.61	0.00	2.093	18.88	0.18	11.3	88.7	0.0	-3.94	1.29	0.83	0.68	0.96	68664	9000	12	0	0	0	0	logfile
✔	7M64	23688	2023-02-16	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.87	0.0	0.04	11.23	0.00	2.241	5.93	0.00	5.2	94.8	0.0	-3.94	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7UN5	26613	2023-02-17	2022-04-08	3.13	3.63	3.08	3.6	0.004	0.72	0.0	0.04	14.46	0.00	2.387	11.64	0.51	7.0	93.0	0.0	-3.83	0.40	0.80	4.50	3.6	0.005	0.77	0.0	0.04	15.18	0.00	2.237	10.71	0.77	8.5	91.5	0.0	-3.92	0.47	0.35	0.74	4.54	4380	620	10	0	0	0	0	logfile
✔	7WP1	32666	2023-02-17	2022-01-22	3.77	3.91	—	3.9	0.006	1.16	0.0	0.07	14.50	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	3.9	0.005	0.82	0.0	0.05	16.13	0.01	2.091	15.82	1.13	14.6	85.1	0.2	-3.91	1.24	0.64	0.79	2.28	3305	423	4	0	2	0	0	logfile

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