Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V4C	31707	2023-08-09	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.002	0.61	0.0	0.05	17.20	0.00	2.152	4.55	1.52	6.1	93.9	0.0	-4.30	2.19	0.40	0.82	3.23	1287	186	3	0	0	0	0	logfile
✔	7VZF	32227	2023-08-09	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	7NCi	12267	2023-08-12	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	4.0	0.004	0.64	2.0	0.05	14.88	0.00	1.935	18.73	1.48	13.7	86.3	0.0	-4.29	1.57	0.67	0.62	0.22	11292	816	12	0	0	0	5796	logfile
✔	6DSo	8910	2023-08-10	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.004	0.69	0.0	0.04	15.62	0.00	2.146	10.22	0.35	8.8	91.2	0.0	-4.29	1.56	0.50	0.82	4.96	6588	828	12	0	0	0	0	logfile
✔	3JCD	6549	2023-08-31	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	3J2P	5499	2023-08-11	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	3LoS	5137	2023-08-12	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7N9Y	24264	2023-08-10	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7SP1	25364	2023-08-09	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	11.67	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.005	0.84	0.0	0.05	19.70	0.01	2.173	18.69	0.20	12.4	87.6	0.0	-4.24	1.70	0.39	0.74	3.97	4343	540	17	20	0	0	0	logfile
✔	7Q66	13853	2023-08-09	2021-11-05	2.79	2.87	2.63	2.9	0.021	1.42	0.0	0.11	12.58	0.01	2.277	13.59	6.52	0.0	100.0	0.0	-4.18	0.63	0.84	3.82	2.9	0.004	0.75	0.0	0.04	16.09	0.00	2.208	12.61	6.92	0.8	99.2	0.0	-4.23	0.65	0.62	0.88	4.75	4807	682	22	0	0	0	0	logfile
✔	6VH7	21200	2023-08-09	2020-01-09	3.8	3.84	—	4.1	0.007	1.03	0.0	0.05	15.14	0.01	2.318	28.35	2.13	12.4	87.6	0.0	-4.78	0.54	0.62	2.62	4.0	0.003	0.75	0.0	0.05	16.44	0.00	2.317	9.92	0.71	5.9	94.1	0.0	-4.23	3.68	0.58	0.66	1.63	4878	642	6	0	0	0	0	logfile
✔	5Lii	4053	2023-08-08	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	8CYV	27085	2023-08-09	2022-05-24	3.5	3.17	3.47	3.7	0.003	0.61	0.0	0.05	10.01	0.00	2.423	5.36	0.00	5.9	94.1	0.0	-4.11	0.58	0.72	2.74	3.4	0.004	0.75	0.0	0.05	16.08	0.00	2.184	9.50	2.17	7.0	92.4	0.6	-4.20	1.35	0.59	0.75	2.25	5964	864	12	0	0	0	0	logfile
✔	7QiG	13989	2023-08-09	2021-12-14	2.7	2.81	—	2.8	0.005	0.69	0.0	0.05	14.67	0.01	2.138	2.72	0.00	8.7	91.3	0.0	-4.18	0.37	0.86	6.92	2.8	0.003	0.64	0.0	0.05	17.73	0.00	2.134	6.24	0.87	10.0	90.0	0.0	-4.19	0.62	0.38	0.87	5.69	3213	396	3	0	0	0	0	logfile
✔	7NSL	12570	2023-08-10	2021-03-08	3.1	3.25	2.92	3.2	0.012	1.84	0.0	0.08	14.48	0.01	2.367	4.69	0.00	3.7	96.3	0.0	-5.51	0.54	0.77	3.94	3.2	0.005	0.71	0.0	0.04	17.33	0.00	2.133	7.46	0.87	8.6	91.4	0.0	-4.19	0.99	0.56	0.82	3.20	8323	595	7	0	0	0	4053	logfile
✔	7TMC	25995	2023-08-09	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	14.28	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.005	0.89	0.0	0.07	17.14	0.01	2.144	18.47	0.53	12.0	88.0	0.0	-4.18	1.94	0.36	0.76	3.09	3426	405	6	0	12	0	0	logfile
✔	6L2T	0814	2023-08-13	2019-10-06	4.1	4.14	—	4.2	0.003	0.61	0.0	0.05	12.33	0.00	2.222	5.89	0.15	13.8	86.0	0.2	-5.72	0.61	0.76	—	4.2	0.005	0.77	0.0	0.05	12.54	0.01	2.083	8.68	0.00	17.6	82.3	0.1	-4.18	0.52	0.61	0.77	—	13604	1889	3	0	0	0	0	logfile
✔	7MLZ	23914	2023-08-09	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	12.96	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.003	0.79	0.0	0.05	14.96	0.00	2.129	15.09	0.19	15.6	84.3	0.2	-4.17	0.50	0.82	0.65	1.05	4864	624	4	0	5	0	0	logfile
✔	7P6E	13227	2023-08-10	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.005	0.72	0.0	0.05	13.11	0.00	2.134	11.17	0.21	8.3	91.7	0.0	-4.15	2.70	0.51	0.79	4.06	8090	1050	10	0	0	0	0	logfile
✔	6RT0	4994	2023-08-09	2019-05-22	3.1	3.18	—	3.1	0.006	0.97	0.0	0.06	14.23	0.00	2.415	2.11	1.06	11.5	88.5	0.0	-3.76	0.71	0.84	6.51	3.1	0.009	0.89	0.0	0.06	16.41	0.00	2.255	5.41	0.43	17.4	82.6	0.0	-4.13	0.82	0.72	0.86	5.76	4925	735	10	0	0	0	0	logfile

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