Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GYX	34379	2023-04-20	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	15.99	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.67	0.0	0.04	15.90	0.00	1.447	11.17	0.60	2.1	97.9	0.0	2.78	1.28	0.53	0.79	2.23	6118	760	4	0	6	0	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	6ZBF	11153	2023-04-25	2020-06-08	3.2	3.99	3.33	3.6	0.010	1.17	0.0	0.08	13.49	0.01	2.469	1.34	0.00	0.8	99.2	0.0	0.79	0.84	0.76	1.37	3.6	0.003	0.49	0.0	0.03	15.23	0.00	1.930	5.09	0.00	1.1	98.9	0.0	4.10	2.84	0.85	0.78	1.36	19459	1156	4	0	0	0	9861	logfile
✔	7SN2	25209	2023-04-21	2021-10-27	4.3	3.73	—	3.7	0.007	1.31	1.0	0.07	14.19	0.01	1.905	8.33	0.00	0.8	98.9	0.3	-1.92	0.54	0.70	—	3.7	0.003	0.69	0.0	0.05	13.76	0.01	2.053	13.43	0.00	7.9	92.1	0.0	-1.48	0.54	0.55	0.71	—	10092	650	5	0	10	0	4904	logfile
✔	6ZBE	11152	2023-04-25	2020-06-08	3.3	4.04	3.36	3.7	0.010	1.16	0.0	0.08	13.39	0.01	2.470	1.13	0.00	0.8	99.2	0.0	0.61	0.84	0.76	1.69	3.7	0.004	0.53	0.0	0.03	15.47	0.00	2.081	5.89	0.09	1.9	98.1	0.0	3.65	1.52	0.85	0.79	1.32	19534	1160	4	0	0	0	9902	logfile
✔	6T23	10365	2023-04-23	2019-10-07	3.1	3.12	3.08	3.1	0.050	3.17	0.0	0.23	14.19	0.01	2.141	2.13	0.00	0.8	99.2	0.0	0.95	0.75	0.84	3.46	3.1	0.003	1.52	0.0	0.04	16.72	0.00	1.969	12.50	0.26	1.5	98.5	0.0	1.31	0.73	0.74	0.87	3.00	14910	1855	10	0	20	0	0	logfile
✘	8F0A	28754	2023-04-24	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18060	1212	9	0	0	0	9189	logfile
✔	7WQ4	32699	2023-04-20	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.04	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.56	0.0	0.04	15.87	0.00	2.151	6.33	2.82	1.9	98.1	0.0	0.90	1.28	0.64	0.83	3.61	8290	1048	7	0	2	0	0	logfile
✔	7Vo9	32049	2023-04-20	2021-10-13	3.8	3.98	3.82	3.8	0.011	1.58	1.0	0.09	23.08	0.00	2.124	6.40	0.76	0.8	99.2	0.0	2.89	0.75	0.63	0.88	3.9	0.005	0.73	0.0	0.04	27.04	0.00	1.910	21.50	1.52	1.2	98.8	0.0	0.77	1.11	0.78	0.68	0.19	5711	524	10	86	12	0	0	logfile
✔	7ZDi	14650	2023-04-21	2022-03-29	2.9	3.06	2.82	3.1	0.013	2.74	0.0	0.04	16.49	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.005	1.48	0.0	0.04	16.61	0.00	2.159	5.01	0.37	1.0	99.0	0.0	3.01	0.30	0.69	0.87	4.42	10284	976	38	0	42	0	0	logfile
✔	6YE4	10789	2023-04-21	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.29	0.00	2.376	4.96	0.00	2.4	97.6	0.0	3.87	0.94	0.65	0.85	1.22	9140	1180	10	0	5	0	0	logfile
✔	7EG6	31106	2023-04-22	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.64	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.55	0.0	0.03	28.24	0.00	2.190	5.69	0.16	1.7	98.3	0.0	3.31	1.16	0.89	0.88	2.59	12118	779	11	292	0	0	0	logfile
✔	3JAE	6345	2023-04-22	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.27	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.87	0.0	0.04	13.61	0.00	2.157	15.62	0.16	2.8	97.2	0.0	0.08	1.49	0.72	0.82	1.59	12825	1690	10	0	10	0	0	logfile
✔	6XLK	22246	2023-04-20	2020-06-28	3.3	3.63	—	3.5	0.008	0.76	0.0	0.05	20.17	0.00	2.216	5.71	0.41	0.9	99.1	0.0	-2.26	0.78	0.84	2.91	3.5	0.003	0.53	0.0	0.04	20.59	0.00	2.270	8.09	0.41	1.5	98.5	0.0	0.58	0.43	0.79	0.85	2.20	5456	536	6	46	4	0	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	8A3B	15110	2023-04-23	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.004	0.59	0.0	0.04	16.26	0.00	2.134	6.73	0.49	1.6	98.4	0.0	2.23	0.49	0.74	0.77	2.04	14448	1792	7	0	0	0	0	logfile
✔	8DPG	27634	2023-04-20	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.47	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.002	0.54	0.0	0.04	13.50	0.00	2.090	5.22	0.12	2.2	97.8	0.0	1.05	1.11	0.76	0.72	1.84	8162	1093	6	0	2	0	0	logfile
✔	7TT5	26111	2023-04-23	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.3	0.004	0.59	0.0	0.04	12.22	0.00	1.862	9.68	0.00	3.4	96.6	0.0	0.38	1.20	0.69	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	7P5M	13201	2023-04-20	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.60	0.0	0.04	13.68	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.003	0.63	0.0	0.04	16.50	0.00	2.182	9.28	0.31	1.2	98.8	0.0	3.94	0.44	0.52	0.77	1.01	6204	788	8	0	12	0	0	logfile
✔	6XLN	22249	2023-04-27	2020-06-28	2.8	3.41	—	3.3	0.011	0.93	0.0	0.06	14.93	0.01	1.822	8.83	0.22	0.9	99.0	0.0	-2.97	0.74	0.81	2.70	3.3	0.005	0.64	0.0	0.04	16.87	0.00	1.941	9.55	1.72	2.9	97.1	0.0	-0.24	0.49	0.69	0.76	2.08	25956	3207	11	40	5	0	0	logfile

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