Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DEP	27394	2023-09-27	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	8EET	28057	2023-09-27	2022-09-07	3.1	3.36	3.21	3.4	0.007	0.92	0.0	0.06	12.28	0.00	0.312	9.93	1.07	0.5	99.5	0.0	1.87	0.72	0.82	3.55	3.4	0.037	2.69	0.0	0.32	14.46	0.00	0.378	13.19	0.11	1.1	98.9	0.0	2.07	1.31	0.68	0.83	2.96	107640	13260	60	0	120	0	0	logfile
✔	7UNM	26627	2023-09-30	2022-04-11	2.61	3.48	2.66	3.3	0.002	0.43	0.0	0.04	11.23	0.00	2.087	3.44	0.00	0.5	99.5	0.0	3.34	0.67	0.82	2.41	3.3	0.004	0.53	0.0	0.04	14.40	0.00	1.941	4.47	0.48	2.1	97.9	0.0	4.10	0.81	0.56	0.79	1.79	11694	736	6	0	5	55	5920	logfile
✔	8CKY	16706	2023-09-30	2023-02-16	2.6	3.00	2.57	2.9	0.004	0.82	0.0	0.05	12.58	0.01	1.934	7.36	0.54	0.5	99.5	0.0	0.20	0.62	0.77	5.97	2.9	0.004	0.56	0.0	0.04	17.98	0.00	2.163	8.97	2.17	0.9	99.1	0.0	1.82	0.63	0.62	0.79	4.63	10338	1344	12	0	0	0	0	logfile
✔	8EG0	28108	2023-09-28	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	11.73	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.003	0.55	0.0	0.04	13.56	0.00	2.203	11.68	0.40	1.9	98.1	0.0	1.52	0.58	0.90	0.85	2.13	6031	584	4	65	0	0	0	logfile
✔	6WKY	21813	2023-09-29	2020-04-17	4.2	4.29	—	4.1	0.006	0.74	0.0	0.05	16.88	0.00	2.366	8.91	0.00	0.6	99.4	0.0	-5.20	0.76	0.88	—	4.2	0.004	0.93	0.0	0.05	15.54	0.00	2.272	22.09	0.00	0.6	99.4	0.0	-2.05	3.27	0.75	0.87	—	9140	1160	40	0	0	0	0	logfile
✔	7NLL	12465	2023-09-28	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	10.85	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.65	0.0	0.04	14.88	0.00	2.220	8.36	3.07	2.3	97.5	0.2	-0.33	1.58	0.82	0.87	3.19	5056	656	6	0	2	0	0	logfile
✔	8G7L	29815	2023-09-28	2023-02-16	2.5	2.66	2.66	2.7	0.008	1.14	0.0	0.06	13.34	0.01	2.287	1.63	0.79	0.6	99.4	0.0	1.52	0.73	0.83	2.54	2.7	0.004	0.58	0.0	0.04	14.59	0.00	2.184	5.19	0.44	1.0	99.0	0.0	1.32	0.30	0.72	0.84	2.45	55510	7378	28	0	42	0	0	logfile
✔	7SQV	25396	2023-09-27	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.47	0.0	0.04	16.30	0.00	2.295	1.36	1.67	1.1	98.9	0.0	1.71	1.99	0.77	0.90	3.84	4471	573	5	0	0	7	0	logfile
✔	8iD6	35358	2023-09-29	2023-02-12	2.8	2.99	2.85	3.0	0.004	0.67	0.0	0.05	11.40	0.01	2.180	7.91	0.00	0.7	99.3	0.0	0.86	0.68	0.81	3.66	3.0	0.002	0.58	0.0	0.04	14.24	0.00	2.134	4.79	1.52	2.1	97.9	0.0	1.31	0.52	0.67	0.83	3.38	8727	1139	6	0	1	0	0	logfile
✔	7UGV	26497	2023-09-28	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	3.4	0.003	0.57	0.0	0.04	12.67	0.00	2.212	5.33	0.93	0.7	99.3	0.0	3.03	1.30	0.51	0.87	2.79	3107	418	1	0	3	0	0	logfile
✔	7UGD	26487	2023-09-28	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.004	0.58	0.0	0.04	14.29	0.00	2.225	3.80	0.31	0.2	99.8	0.0	2.52	0.45	0.49	0.85	2.12	3079	415	1	0	3	0	0	logfile
✔	8PoP	17794	2023-09-29	2023-07-05	3.0	2.77	2.97	3.0	0.009	1.44	0.0	0.07	19.79	0.01	2.277	3.16	0.12	0.7	99.3	0.0	-0.51	0.68	0.84	2.21	3.0	0.004	0.62	0.0	0.03	21.80	0.00	2.167	6.54	2.03	0.3	99.7	0.0	3.96	1.40	0.70	0.83	1.37	8929	953	11	56	0	0	0	logfile
✔	8G3K	29700	2023-09-27	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	17.12	0.00	2.333	3.72	0.41	0.7	99.3	0.0	4.78	1.17	0.47	0.83	4.98	2244	285	2	0	0	0	0	logfile
✔	7UGJ	26489	2023-09-27	2022-03-24	2.81	3.45	2.86	3.2	0.002	0.50	0.0	0.04	9.70	0.00	2.285	3.79	0.00	0.7	99.3	0.0	2.01	0.54	0.89	3.90	3.3	0.003	0.61	0.0	0.04	13.16	0.00	2.201	5.69	2.22	1.0	99.0	0.0	2.83	0.57	0.51	0.86	1.70	3095	416	1	0	3	0	0	logfile
✔	7Y5G	33619	2023-09-27	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	8GYW	34378	2023-09-28	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	15.18	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	3.9	0.003	0.67	0.0	0.04	16.46	0.00	1.170	13.03	1.21	1.7	98.3	0.0	2.64	1.27	0.50	0.76	0.83	6076	760	4	0	6	0	0	logfile
✔	8GYX	34379	2023-09-28	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	15.99	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.67	0.0	0.04	15.90	0.00	1.447	11.17	0.60	2.1	97.9	0.0	2.78	1.28	0.53	0.79	2.23	6118	760	4	0	6	0	0	logfile
✔	7LRC	23494	2023-09-28	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.45	0.00	2.007	9.75	0.90	0.8	99.2	0.0	3.50	0.56	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile
✔	7SN2	25209	2023-09-30	2021-10-27	4.3	3.73	—	3.7	0.007	1.31	1.0	0.07	14.19	0.01	1.905	8.33	0.00	0.8	98.9	0.3	-1.92	0.54	0.70	—	3.7	0.003	0.69	0.0	0.05	13.76	0.01	2.053	13.43	0.00	7.9	92.1	0.0	-1.48	0.54	0.55	0.71	—	10092	650	5	0	10	0	4904	logfile

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