Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XY9	33514	2023-08-12	2022-06-01	2.12	2.29	2.22	2.3	0.002	0.54	0.0	0.05	17.43	0.00	1.988	4.59	1.67	4.0	96.0	0.0	0.43	0.78	0.88	5.01	2.3	0.004	0.67	0.0	0.05	17.41	0.01	1.873	5.07	1.95	4.2	95.8	0.0	-0.09	0.16	0.75	0.87	5.58	10962	1376	12	0	12	574	0	logfile
✔	7ZYY	15028	2023-08-22	2022-05-25	2.12	2.40	2.14	2.1	0.007	0.89	0.0	0.05	17.24	0.00	2.008	4.42	1.19	2.4	97.6	0.0	-0.65	0.91	0.89	4.75	2.1	0.003	0.57	0.0	0.04	17.11	0.00	1.934	7.74	1.47	2.5	97.5	0.0	0.40	1.08	0.91	0.89	4.79	33924	4224	12	0	28	324	0	logfile
✔	7TF7	25864	2023-08-24	2022-01-06	2.13	2.24	—	2.2	0.004	0.61	0.0	0.04	15.42	0.00	2.187	5.57	1.43	2.5	97.4	0.1	1.01	0.47	0.70	5.40	2.3	0.002	0.51	0.0	0.04	16.42	0.00	2.224	4.84	1.96	3.2	96.8	0.0	1.42	0.49	0.71	0.87	5.84	39976	4980	12	0	0	0	0	logfile
✔	7ZYV	15027	2023-08-14	2022-05-25	2.13	2.84	2.17	2.6	0.007	0.70	0.0	0.05	18.57	0.01	1.927	11.83	2.20	3.9	96.1	0.0	0.99	0.78	0.90	3.60	2.6	0.003	0.59	0.0	0.04	17.78	0.00	2.186	3.85	2.08	3.4	96.6	0.0	1.50	0.39	0.77	0.90	2.95	16452	1946	29	0	32	0	0	logfile
✔	7JFo	22308	2023-08-24	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.71	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	2.1	0.003	0.66	0.0	0.05	14.53	0.01	2.219	7.32	1.08	2.6	97.4	0.0	1.20	0.78	0.71	0.82	5.81	38958	4832	40	0	0	1198	0	logfile
✔	8E41	27876	2023-08-13	2022-08-17	2.13	2.86	2.57	2.6	0.005	0.38	1.0	0.02	12.72	0.02	1.983	1.89	0.85	5.2	94.8	0.0	0.82	0.73	0.90	5.26	2.6	0.005	0.58	1.0	0.04	13.77	0.01	1.985	3.39	1.17	5.5	94.4	0.1	0.23	0.24	0.73	0.91	5.26	115744	1186	12	3016	1	0	41833	logfile
✔	7RTB	24680	2023-08-11	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	17.07	0.00	2.260	5.43	2.77	2.7	97.3	0.0	1.12	0.68	0.68	0.82	3.99	8972	1169	7	0	0	1	0	logfile
✔	7S4H	24826	2023-08-26	2021-09-08	2.14	2.27	—	2.3	0.009	1.03	3.0	0.05	19.43	0.00	1.502	14.45	2.83	4.8	94.9	0.2	0.71	0.77	0.85	4.94	2.2	0.006	0.71	0.0	0.05	18.54	0.01	1.942	8.72	2.38	4.9	94.7	0.4	0.75	0.58	0.81	0.92	5.18	22889	2577	27	0	63	410	0	logfile
✔	8DR1	27668	2023-08-25	2022-07-20	2.14	2.91	2.21	2.7	0.008	0.57	0.0	0.04	17.93	0.00	1.946	2.66	0.74	1.4	98.6	0.0	1.79	0.80	0.77	4.33	2.7	0.003	0.52	0.0	0.04	17.82	0.00	1.751	3.00	1.21	1.2	98.8	0.0	2.09	1.05	0.77	0.87	4.59	43630	2608	21	64	8	12	21631	logfile
✘	8ENM	28273	2023-08-15	2022-09-30	2.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17722	1999	12	0	8	1693	0	logfile
✔	7ZZ6	15036	2023-08-10	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.004	0.61	0.0	0.04	17.09	0.00	1.999	8.27	3.14	3.0	97.0	0.0	0.69	0.24	0.93	0.92	4.82	8257	1017	6	0	6	157	0	logfile
✔	7PK6	13466	2023-08-14	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	8A2Z	15109	2023-08-13	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.59	0.0	0.04	15.50	0.00	2.041	4.24	0.52	1.7	98.3	0.0	1.11	1.46	0.74	0.89	5.98	15060	1830	15	0	10	570	0	logfile
✔	8A2Y	15108	2023-08-13	2022-06-06	2.15	2.21	2.10	2.2	0.005	0.61	0.0	0.05	13.42	0.00	2.177	2.39	0.64	1.9	98.1	0.0	-1.01	0.72	0.87	6.39	2.2	0.003	0.62	0.0	0.05	15.79	0.00	2.140	4.05	0.58	1.1	98.9	0.0	0.97	0.83	0.72	0.89	6.11	15078	1835	15	0	15	528	0	logfile
✔	7R4X	14317	2023-08-19	2022-02-09	2.15	1.94	—	2.1	0.012	1.13	0.0	0.06	16.98	0.04	1.443	4.90	4.12	3.8	96.2	0.1	-0.66	0.70	0.73	4.07	2.0	0.005	1.06	0.0	0.04	17.40	0.01	1.810	12.10	2.57	3.6	96.4	0.0	0.26	0.92	0.77	0.85	4.42	77937	4792	77	1646	174	4117	0	logfile
✔	7S4J	24828	2023-08-26	2021-09-09	2.16	2.44	—	2.5	0.009	1.07	1.0	0.05	19.63	0.00	1.948	13.88	4.30	5.2	94.3	0.5	0.65	0.75	0.84	4.80	2.4	0.002	0.59	0.0	0.04	17.26	0.00	1.987	9.16	2.70	4.5	95.3	0.2	0.80	0.36	0.77	0.90	4.57	22780	2577	27	0	63	304	0	logfile
✔	8DLW	27518	2023-08-21	2022-07-08	2.16	3.12	2.26	2.6	0.007	1.05	0.0	0.06	11.12	0.01	2.290	1.95	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	2.6	0.004	0.65	0.0	0.04	13.83	0.00	2.164	6.94	1.06	2.6	97.4	0.0	0.96	2.12	0.88	0.89	4.13	30267	3768	33	0	78	0	0	logfile
✔	8A2R	15104	2023-08-13	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.002	0.57	0.0	0.04	16.82	0.00	1.938	3.48	0.90	1.4	98.6	0.0	1.29	1.70	0.73	0.90	5.61	14990	1830	15	0	15	480	0	logfile
✔	8io8	35611	2023-08-12	2023-03-10	2.17	2.85	2.44	2.5	0.006	0.67	0.0	0.05	10.89	0.00	2.008	5.86	0.08	3.4	96.6	0.0	0.23	0.70	0.91	5.90	2.5	0.002	0.47	0.0	0.04	13.54	0.00	2.024	5.01	0.68	2.9	96.9	0.1	1.12	0.40	0.70	0.91	4.71	12596	1576	4	0	6	0	0	logfile
✔	8Si5	40499	2023-08-19	2023-04-14	2.17	2.32	2.30	2.3	0.015	1.22	0.0	0.07	17.88	0.01	2.001	3.41	0.31	7.7	92.1	0.2	-3.02	0.60	0.78	4.56	2.3	0.005	0.69	0.0	0.05	17.46	0.00	1.857	13.97	0.69	5.6	94.4	0.0	-0.20	0.67	0.65	0.86	3.67	74865	4388	12	0	65	404	35916	logfile

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