Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EL8	28224	2023-11-13	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.003	0.45	0.0	0.04	15.16	0.00	2.353	2.27	0.00	2.4	97.6	0.0	1.11	0.26	0.67	0.85	2.07	4467	597	2	0	0	0	0	logfile
✔	7VZ1	32218	2023-11-20	2021-11-15	2.5	2.55	—	2.5	0.008	0.78	0.0	0.05	17.17	0.01	2.201	6.34	1.17	3.3	96.6	0.1	0.11	0.79	0.91	4.60	2.5	0.002	0.53	0.0	0.04	17.22	0.00	2.167	5.15	1.74	3.5	96.5	0.0	0.48	0.26	0.78	0.91	4.33	28737	3488	44	0	17	712	0	logfile
✔	8C4T	16428	2023-11-15	2023-01-04	3.23	3.32	3.18	3.3	0.003	0.58	2.0	0.05	16.49	0.00	2.148	8.51	0.36	2.9	97.1	0.0	0.76	0.79	0.84	2.89	3.3	0.003	0.51	0.0	0.04	16.64	0.00	2.180	7.93	0.18	3.6	96.4	0.0	1.30	0.26	0.78	0.84	2.94	10459	1268	3	12	1	0	0	logfile
✔	7R4F	14302	2023-11-15	2022-02-08	2.4	2.39	—	2.3	0.007	0.79	0.0	0.87	17.29	0.01	1.904	2.94	1.29	2.5	97.5	0.0	0.66	0.73	0.90	5.70	2.4	0.007	1.33	0.0	0.26	17.05	0.00	2.088	4.34	1.47	1.7	98.3	0.0	1.62	0.26	0.74	0.91	5.09	65494	7788	114	0	44	1415	0	logfile
✔	8DTo	27706	2023-11-18	2022-07-26	3.57	3.93	3.47	3.6	0.007	0.94	0.0	0.06	13.87	0.01	2.241	3.34	0.00	4.6	95.4	0.0	-1.43	0.81	0.84	2.58	3.6	0.002	0.55	0.0	0.04	15.01	0.00	2.090	7.59	0.14	3.7	96.3	0.0	-0.44	0.26	0.81	0.85	2.42	20923	2445	54	0	146	0	0	logfile
✔	8G6X	29787	2023-11-21	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	2.0	0.005	0.86	0.0	0.04	15.38	0.01	1.756	7.16	3.92	4.3	95.6	0.1	-0.57	0.26	0.69	0.85	5.06	93873	3177	72	3037	252	3462	0	logfile
✔	7VLK	32023	2023-11-20	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.32	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.003	0.56	0.0	0.04	17.19	0.00	2.164	6.61	3.05	2.5	97.5	0.0	1.53	0.26	0.77	0.86	3.20	28774	3698	12	0	0	0	0	logfile
✔	7K5i	22681	2023-11-18	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.79	0.01	2.031	6.52	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.003	0.59	0.0	0.04	16.82	0.00	2.099	6.67	1.90	3.7	96.3	0.0	-0.12	0.26	0.78	0.83	3.02	74540	4881	40	1665	4	0	0	logfile
✔	7Y82	33678	2023-11-15	2022-06-22	2.83	2.38	2.88	3.0	0.003	0.57	0.0	0.04	18.57	0.00	1.887	16.18	4.59	1.8	98.2	0.0	0.77	0.77	0.81	2.77	3.0	0.003	0.56	0.0	0.04	18.92	0.00	1.916	15.97	4.51	2.4	97.6	0.0	0.87	0.26	0.70	0.80	2.83	12278	1341	4	66	5	0	0	logfile
✔	7RQU	24636	2023-11-22	2021-08-08	3.05	3.32	—	3.3	0.012	1.15	0.0	0.06	17.93	0.00	2.334	3.79	0.00	3.2	96.8	0.0	1.69	0.63	0.76	2.73	3.3	0.003	0.47	0.0	0.03	15.76	0.00	2.351	3.35	0.36	3.9	96.1	0.0	1.89	0.26	0.64	0.80	2.64	35602	2416	8	0	38	0	16568	logfile
✔	8HBF	34627	2023-11-14	2022-10-28	3.1	3.32	—	3.3	0.010	0.84	1.0	0.05	15.71	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	3.3	0.003	0.55	0.0	0.04	15.91	0.00	2.030	8.92	0.46	2.5	97.5	0.0	0.86	0.26	0.73	0.83	2.77	8448	1095	4	0	6	0	0	logfile
✔	7QTT	14146	2023-11-18	2022-01-15	3.1	4.66	2.92	2.3	0.004	0.85	1.0	0.10	14.22	0.01	2.124	3.97	0.04	4.5	95.2	0.2	-2.31	0.77	0.82	2.33	2.4	0.002	0.53	0.0	0.04	14.56	0.00	1.954	8.67	0.18	3.8	96.0	0.2	1.20	0.26	0.78	0.84	2.14	73537	9759	46	343	21	0	0	logfile
✔	8EYK	28691	2023-11-16	2022-10-27	2.7	3.20	2.66	3.0	0.013	1.06	0.0	0.22	17.54	0.00	2.171	10.91	1.25	2.1	97.9	0.0	0.16	0.76	0.82	3.29	3.0	0.003	0.58	0.0	0.04	16.96	0.00	2.172	10.71	2.50	1.8	98.2	0.0	0.06	0.26	0.76	0.82	3.09	15386	2036	4	0	6	0	0	logfile
✔	7W0H	32242	2023-11-16	2021-11-18	3.4	3.64	—	3.6	0.007	0.77	0.0	0.04	17.97	0.01	2.191	8.69	0.20	4.0	96.0	0.0	1.21	0.82	0.89	2.42	3.6	0.003	0.57	0.0	0.04	17.10	0.00	2.100	8.11	0.27	4.2	95.8	0.0	1.21	0.26	0.82	0.90	2.36	66850	8140	70	0	40	0	0	logfile
✔	7WiJ	32531	2023-11-15	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	7NL0	12453	2023-11-15	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.17	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.003	0.60	0.0	0.03	29.96	0.00	2.230	10.86	0.48	2.6	97.4	0.0	2.41	0.26	0.77	0.81	2.77	11363	755	10	262	0	0	0	logfile
✔	7SK4	25172	2023-11-15	2021-10-19	3.3	3.73	—	3.6	0.003	0.50	0.0	0.05	14.48	0.00	2.086	5.89	0.00	5.6	94.4	0.0	-0.26	0.68	0.79	1.76	3.6	0.003	0.51	0.0	0.04	15.54	0.00	2.068	7.17	0.14	5.6	94.4	0.0	0.05	0.26	0.68	0.80	1.59	13145	831	7	0	2	0	6489	logfile
✔	8E32	27854	2023-11-15	2022-08-16	2.35	2.96	2.64	2.8	0.006	0.51	0.0	0.03	12.84	0.02	2.005	1.20	0.74	4.6	95.4	0.0	0.03	0.74	0.91	5.35	2.8	0.005	0.63	0.0	0.04	13.96	0.01	1.935	1.77	1.17	5.4	94.6	0.0	-0.60	0.26	0.70	0.90	5.47	115899	1179	11	3016	2	1	41852	logfile
✔	8io9	35612	2023-11-18	2023-03-10	2.36	3.18	2.44	2.8	0.005	0.60	0.0	0.04	10.81	0.00	1.987	8.65	0.48	3.5	96.5	0.0	0.34	0.86	0.84	4.54	2.8	0.003	0.50	0.0	0.04	12.23	0.00	1.930	8.38	0.63	3.7	96.3	0.0	0.62	0.26	0.86	0.85	3.88	75744	9456	24	0	36	0	0	logfile
✔	6YT9	10914	2023-11-21	2020-04-24	2.7	2.80	2.65	2.7	0.010	0.81	0.0	0.05	16.25	0.01	1.825	7.52	8.22	8.1	91.9	0.0	-3.30	0.82	0.86	3.10	2.8	0.007	0.66	0.0	0.04	16.12	0.00	1.831	7.55	4.11	6.7	93.3	0.0	-0.35	0.26	0.84	0.90	2.81	33279	1496	17	1040	56	0	0	logfile

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