Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PSN	13615	2023-04-21	2021-09-23	2.9	3.55	—	3.5	0.009	0.82	0.0	0.04	14.29	0.01	1.923	4.83	0.00	2.7	97.3	0.0	-3.01	0.59	0.78	3.43	3.5	0.003	0.54	0.0	0.04	16.09	0.00	1.998	7.33	1.30	1.4	98.6	0.0	1.16	0.50	0.58	0.79	2.48	9464	1170	4	0	8	0	0	logfile
✔	6XLB	22238	2023-04-22	2020-06-28	3.8	4.01	—	3.8	0.002	0.43	0.0	0.04	13.65	0.00	2.235	7.33	0.00	2.0	98.0	0.0	-2.43	0.82	0.77	1.14	3.8	0.003	0.70	0.0	0.04	16.05	0.00	2.137	17.34	0.48	3.2	96.8	0.0	-0.32	0.89	0.84	0.81	1.48	11180	1380	4	0	0	0	0	logfile
✔	7KLU	22918	2023-04-25	2020-11-01	3.5	3.35	—	3.4	0.004	0.60	0.0	0.04	15.43	0.00	2.005	5.76	0.00	4.0	96.0	0.0	-0.73	0.77	0.80	2.13	3.4	0.004	0.61	0.0	0.04	17.17	0.00	1.863	8.64	0.09	6.2	93.8	0.0	-1.15	0.95	0.78	0.82	2.23	19742	2452	8	0	12	0	0	logfile
✔	6PLQ	20372	2023-04-23	2019-07-01	3.4	4.30	—	4.3	0.002	0.53	0.0	0.05	7.12	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.004	0.98	0.0	0.05	14.71	0.00	2.167	14.91	0.45	4.9	95.1	0.0	-1.16	2.47	0.73	0.78	1.41	14240	1730	15	0	20	0	0	logfile
✔	7Y13	33555	2023-04-19	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.24	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.003	0.56	0.0	0.04	15.52	0.00	2.192	8.24	0.43	5.3	94.7	0.0	2.76	0.26	0.54	0.80	2.48	2199	264	1	0	7	2	0	logfile
✔	7KCM	22816	2023-04-22	2020-10-06	3.43	3.27	—	3.4	0.004	0.64	0.0	0.04	15.77	0.00	1.994	9.30	0.00	4.5	95.5	0.0	0.75	0.80	0.83	2.81	3.4	0.004	0.60	0.0	0.04	17.00	0.00	1.870	12.71	0.25	4.9	95.1	0.0	-0.26	0.39	0.81	0.87	2.75	10838	1347	6	0	7	0	0	logfile
✔	7U2N	26316	2023-04-23	2022-02-24	2.8	3.30	—	3.4	0.007	0.77	0.0	0.05	8.79	0.00	2.195	23.96	0.00	8.6	91.4	0.0	-4.23	0.52	0.81	5.21	3.3	0.003	0.76	0.0	0.04	15.22	0.00	2.160	12.12	2.24	5.4	94.5	0.1	-0.68	0.74	0.47	0.78	3.69	14080	1725	15	0	20	0	0	logfile
✔	7JPP	22418	2023-04-23	2020-08-09	3.7	3.83	—	3.8	0.007	1.18	0.0	0.06	15.25	0.01	2.061	3.35	0.00	1.6	98.4	0.0	-1.90	0.72	0.78	2.10	3.8	0.003	0.57	0.0	0.04	16.73	0.00	2.012	6.27	0.18	2.3	97.7	0.0	0.74	2.22	0.74	0.79	1.33	14872	1816	7	0	4	0	0	logfile
✔	7T4Q	25685	2023-04-23	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.96	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.003	0.71	0.0	0.04	16.18	0.00	2.141	8.93	2.58	3.0	97.0	0.0	0.35	1.31	0.76	0.85	2.90	15473	1946	15	0	6	0	0	logfile
✔	7RMi	24572	2023-04-20	2021-07-27	3.2	3.78	3.15	3.7	0.004	0.84	0.0	0.05	12.68	0.01	2.296	4.36	0.00	3.4	96.6	0.0	-1.03	0.69	0.72	2.32	3.7	0.003	0.60	0.0	0.04	14.60	0.00	2.196	8.23	0.57	3.1	96.9	0.0	0.53	1.28	0.66	0.78	2.20	7205	960	6	0	1	0	0	logfile
✔	7S4X	24838	2023-04-23	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	17.12	0.00	1.878	7.05	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.003	0.51	0.0	0.04	17.52	0.00	1.929	7.34	0.49	3.2	96.8	0.0	0.97	0.30	0.83	0.88	3.63	14491	1354	10	161	5	7	0	logfile
✔	7RKN	24501	2023-04-21	2021-07-22	3.6	3.80	—	3.7	0.004	0.97	0.0	0.06	12.67	0.01	2.206	7.90	0.00	4.7	95.3	0.0	-2.17	0.74	0.81	2.81	3.7	0.004	0.66	0.0	0.04	14.86	0.00	2.098	14.46	0.00	4.6	95.4	0.0	-1.46	0.44	0.74	0.83	2.38	9393	1201	6	0	0	0	0	logfile
✔	7RMH	24570	2023-04-20	2021-07-27	3.1	4.02	3.03	3.9	0.004	0.75	0.0	0.05	13.42	0.01	2.290	2.56	0.00	4.1	95.9	0.0	-1.32	0.74	0.80	2.69	3.9	0.003	0.56	0.0	0.04	15.01	0.00	2.236	4.98	0.00	3.4	96.5	0.1	0.64	0.53	0.68	0.81	2.67	7434	986	6	0	1	0	0	logfile
✔	6PBY	20295	2023-04-26	2019-06-14	3.67	3.77	—	3.7	0.008	0.93	0.0	0.06	14.38	0.01	2.248	6.20	0.00	4.3	95.7	0.0	-3.45	0.56	0.56	2.08	3.7	0.003	0.69	0.0	0.04	15.78	0.00	2.159	12.62	0.63	3.0	97.0	0.0	0.63	1.52	0.69	0.77	1.39	23832	3268	8	0	0	0	0	logfile
✔	7JPo	22417	2023-04-23	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.53	0.01	2.073	2.39	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.003	0.55	0.0	0.04	16.90	0.00	1.959	5.65	0.11	2.4	97.6	0.0	0.62	0.45	0.81	0.83	1.84	16087	1966	9	0	7	0	0	logfile
✔	7UN6	26614	2023-04-21	2022-04-09	3.3	3.43	3.19	3.6	0.004	0.60	0.0	0.04	13.87	0.00	1.879	11.49	0.00	5.0	95.0	0.0	-0.89	0.49	0.57	2.11	3.6	0.003	0.64	0.0	0.04	16.12	0.00	2.100	11.27	0.20	5.0	95.0	0.0	-0.07	0.70	0.57	0.70	1.64	9042	1118	3	0	0	0	0	logfile
✔	7VFJ	31956	2023-04-21	2021-09-13	3.98	4.28	—	4.1	0.004	0.83	0.0	0.05	13.08	0.01	2.134	13.86	0.00	7.0	92.8	0.3	-0.92	0.66	0.77	1.38	4.1	0.005	0.95	0.0	0.05	16.24	0.01	2.113	22.31	1.42	8.2	91.6	0.2	-1.12	1.35	0.67	0.80	1.27	8780	1130	6	0	0	0	0	logfile
✔	7P9U	13266	2023-04-20	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.77	0.0	0.04	16.17	0.00	2.152	13.54	0.93	6.6	93.2	0.2	0.53	0.41	0.52	0.75	0.80	3943	503	2	0	0	0	0	logfile
✔	7SY7	25519	2023-04-28	2021-11-24	2.81	3.86	—	3.0	0.005	0.82	0.0	0.06	13.28	0.01	2.281	3.29	0.00	2.0	98.0	0.0	-0.05	0.86	0.83	2.20	3.0	0.003	0.58	0.0	0.04	14.59	0.00	2.160	8.74	0.78	2.0	98.0	0.0	0.99	1.18	0.87	0.85	2.06	28581	3517	26	0	64	0	0	logfile
✔	7SXZ	25511	2023-04-28	2021-11-24	2.61	3.54	—	2.9	0.005	0.82	0.0	0.06	13.28	0.01	2.280	3.23	0.00	2.0	98.0	0.0	-0.12	0.83	0.83	2.27	2.9	0.003	0.58	0.0	0.04	14.89	0.00	2.186	8.54	0.49	2.1	97.9	0.0	0.85	1.20	0.83	0.84	2.52	28583	3517	26	0	64	0	0	logfile

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