Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VL8	32020	2023-09-29	2021-10-02	2.9	3.53	—	3.5	0.008	0.93	0.0	0.07	12.60	0.00	2.289	5.92	0.00	3.2	96.8	0.0	-1.45	0.56	0.71	1.61	3.5	0.003	0.61	0.0	0.04	15.82	0.00	2.154	8.32	2.98	2.6	97.4	0.0	0.27	1.25	0.47	0.64	1.49	8834	1132	6	0	1	0	0	logfile
✔	7Y27	33587	2023-09-28	2022-06-09	3.48	3.96	3.59	3.9	0.012	0.63	0.0	0.06	12.89	0.00	2.204	5.95	0.00	3.7	96.2	0.1	0.16	0.67	0.81	2.45	4.0	0.006	0.70	0.0	0.04	15.03	0.00	2.098	6.20	0.52	5.6	94.4	0.0	-0.07	0.40	0.68	0.84	2.51	8184	1137	7	0	1	0	0	logfile
✔	7SWN	25476	2023-09-27	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	7Yi9	33854	2023-09-28	2022-07-15	2.6	2.91	2.69	2.9	0.004	0.65	0.0	0.40	14.29	0.00	2.115	9.72	0.00	5.0	95.0	0.0	-0.81	0.63	0.75	3.34	2.9	0.003	0.57	0.0	0.04	17.36	0.00	2.126	10.96	1.73	4.2	95.8	0.0	-0.57	1.28	0.65	0.78	3.39	5226	634	5	0	1	0	0	logfile
✔	7UY8	26867	2023-09-29	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.003	0.66	0.0	0.04	14.44	0.00	2.152	20.87	0.00	5.8	94.1	0.1	-0.35	1.42	0.92	0.85	—	9552	1161	5	0	1	0	0	logfile
✔	7SUN	25442	2023-09-30	2021-11-17	3.6	3.21	—	3.4	0.003	0.69	0.0	0.05	13.91	0.00	2.279	7.34	0.00	3.6	96.4	0.0	0.67	0.63	0.78	2.16	3.4	0.003	0.58	0.0	0.04	15.78	0.00	2.168	11.53	0.17	4.0	96.0	0.0	1.58	0.42	0.64	0.80	2.04	10454	1350	2	0	0	0	0	logfile
✔	7UTN	26782	2023-09-28	2022-04-27	2.74	3.33	2.90	3.1	0.007	0.68	0.0	0.04	18.57	0.00	2.080	8.58	0.00	1.8	98.2	0.0	0.01	0.86	0.88	4.65	3.1	0.002	0.52	0.0	0.03	18.32	0.00	2.194	7.85	0.58	1.5	98.5	0.0	1.03	0.32	0.82	0.84	3.64	8003	397	4	228	0	0	0	logfile
✔	7W3X	32295	2023-09-28	2021-11-26	3.21	2.33	3.15	2.2	0.004	0.76	0.0	0.05	13.78	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.1	0.003	0.68	0.0	0.05	16.13	0.00	2.128	11.02	0.62	8.3	91.7	0.0	-2.63	0.36	0.78	0.82	2.85	7429	893	7	0	31	0	0	logfile
✔	6VN7	21249	2023-09-29	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.54	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.005	0.65	0.0	0.04	14.31	0.00	2.106	8.15	0.44	2.3	97.7	0.0	0.87	0.75	0.56	0.74	2.05	8620	1052	7	0	10	0	0	logfile
✔	6HBU	0190	2023-09-29	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.06	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.0	0.006	0.74	0.0	0.05	14.89	0.00	2.099	7.38	0.20	5.0	94.8	0.2	-0.07	0.54	0.77	0.89	3.91	9146	1168	4	0	4	0	0	logfile
✔	7URA	26707	2023-09-28	2022-04-21	3.11	3.40	3.12	3.3	0.020	1.12	0.0	0.78	16.47	0.00	2.051	11.83	0.00	4.2	95.8	0.0	-2.18	0.59	0.85	3.83	3.3	0.002	1.08	0.0	0.12	16.33	0.00	2.219	5.44	0.36	3.4	96.6	0.0	1.10	0.41	0.57	0.85	2.59	5400	658	4	0	6	0	0	logfile
✔	7P54	13194	2023-09-28	2021-07-14	3.3	3.29	3.21	3.5	0.004	0.55	0.0	0.04	13.63	0.00	2.206	6.98	0.00	1.7	98.3	0.0	4.08	0.53	0.76	1.07	3.5	0.003	0.52	0.0	0.05	16.25	0.00	2.253	7.30	0.30	2.7	97.3	0.0	4.46	1.36	0.53	0.78	0.82	6248	794	8	0	12	0	0	logfile
✔	7NNP	12482	2023-09-30	2021-02-25	3.2	2.99	3.18	3.2	0.006	0.96	0.0	0.05	15.80	0.01	2.223	5.43	0.00	3.5	96.5	0.0	-0.72	0.67	0.82	2.17	3.2	0.003	0.57	0.0	0.04	15.97	0.00	2.203	9.94	0.18	3.5	96.5	0.0	0.57	0.31	0.69	0.85	1.97	11096	1456	6	0	11	0	0	logfile
✘	7WYB	32890	2023-09-29	2022-02-15	2.97	2.33	—	2.1	0.005	0.80	0.0	0.05	12.35	0.00	2.176	5.06	0.00	7.0	93.0	0.0	-1.33	0.66	0.61	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8757	1115	5	0	0	0	0	logfile
✔	7XBD	33103	2023-09-29	2022-03-21	3.11	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.05	0.00	2.201	6.38	0.00	4.8	95.2	0.0	-1.80	0.61	0.73	2.27	3.4	0.002	0.55	0.0	0.04	15.91	0.00	2.176	6.72	0.31	4.2	95.8	0.0	-0.61	0.37	0.58	0.73	1.79	8981	1153	6	0	0	0	0	logfile
✔	7ZRK	14917	2023-09-30	2022-05-04	3.1	2.68	3.17	3.0	0.005	0.77	0.0	0.05	15.75	0.01	2.251	6.83	0.00	4.5	95.5	0.0	-0.25	0.63	0.81	2.05	3.0	0.003	0.56	0.0	0.04	16.08	0.00	2.173	9.19	0.00	3.6	96.4	0.0	0.99	0.28	0.62	0.83	2.15	11050	1450	6	0	15	0	0	logfile
✔	7UAE	26422	2023-09-27	2022-03-12	2.6	2.71	2.62	2.3	0.012	1.76	2.0	0.10	12.76	0.02	2.282	0.11	0.00	3.9	96.1	0.0	-0.18	0.66	0.87	6.01	2.3	0.003	0.70	0.0	0.04	16.00	0.00	2.188	7.54	1.68	5.4	94.6	0.0	0.27	1.66	0.68	0.89	4.14	4513	535	7	0	18	0	0	logfile
✔	6Y1A	10669	2023-09-27	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.75	0.0	0.04	11.01	0.00	2.047	15.36	0.00	9.8	90.2	0.0	-4.85	1.54	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	7S8P	24900	2023-09-28	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.8	0.004	0.67	0.0	0.04	15.58	0.00	2.121	3.18	2.61	5.4	94.6	0.0	0.13	0.36	0.84	0.84	3.71	8093	1089	5	0	1	0	0	logfile
✘	7SCJ	25036	2023-09-29	2021-09-28	3.4	2.31	2.97	2.0	0.004	0.60	0.0	0.05	11.12	0.01	2.200	9.22	0.00	5.7	94.3	0.0	-0.25	0.75	0.72	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9336	1131	6	2	7	0	0	logfile

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