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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6o72 | 0638 | 2023-08-20 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 15.63 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | 3.2 | 0.004 | 0.78 | 0.0 | 0.04 | 17.76 | 0.00 | 2.173 | 13.34 | 2.18 | 6.9 | 93.1 | 0.0 | -0.08 | 0.76 | 0.63 | 0.81 | 2.09 | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 6oFE | 20043 | 2023-08-12 | 2019-03-29 | 3.61 | 3.70 | — | 3.6 | 0.006 | 0.63 | 0.0 | 0.04 | 10.07 | 0.01 | 2.325 | 1.57 | 0.00 | 5.3 | 94.7 | 0.0 | -6.24 | 0.64 | 0.85 | 2.72 | 3.6 | 0.003 | 0.56 | 0.0 | 0.03 | 16.25 | 0.00 | 2.166 | 6.08 | 0.46 | 3.9 | 96.1 | 0.0 | 3.89 | 0.61 | 0.65 | 0.86 | 1.19 | 12220 | 1560 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y9T | 33691 | 2023-08-10 | 2022-06-26 | 3.1 | 3.31 | 3.07 | 3.3 | 0.018 | 1.56 | 18.0 | 0.09 | 11.12 | 0.01 | 2.305 | 4.09 | 0.96 | 6.7 | 93.3 | 0.0 | -6.23 | 0.69 | 0.87 | 3.51 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.62 | 0.00 | 2.220 | 5.37 | 0.36 | 4.5 | 95.5 | 0.0 | -1.47 | 0.59 | 0.67 | 0.87 | 3.20 | 7726 | 992 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAA | 7441 | 2023-08-10 | 2018-01-29 | 3.9 | 3.97 | — | 3.9 | 0.009 | 1.33 | 0.0 | 0.07 | 12.41 | 0.01 | 1.886 | 9.42 | 0.00 | 13.0 | 87.0 | 0.0 | -6.23 | 0.64 | 0.79 | 1.91 | 3.9 | 0.003 | 0.85 | 0.0 | 0.04 | 15.65 | 0.00 | 2.145 | 12.63 | 0.25 | 11.7 | 88.3 | 0.0 | -1.27 | 2.14 | 0.66 | 0.79 | 1.54 | 7508 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V2Y | 31670 | 2023-08-17 | 2021-08-10 | 3.4 | 3.56 | — | 3.5 | 0.005 | 0.96 | 0.0 | 0.05 | 16.29 | 0.01 | 2.276 | 3.85 | 0.34 | 7.5 | 92.4 | 0.1 | -6.23 | 0.69 | 0.78 | 2.04 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 17.53 | 0.00 | 2.158 | 10.47 | 0.34 | 7.7 | 92.2 | 0.0 | -1.81 | 1.26 | 0.70 | 0.81 | 1.61 | 23097 | 2846 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y9U | 33692 | 2023-08-10 | 2022-06-26 | 3.3 | 3.48 | 3.23 | 3.5 | 0.011 | 1.27 | 2.0 | 0.06 | 9.98 | 0.01 | 2.311 | 3.19 | 0.00 | 5.3 | 94.7 | 0.0 | -6.23 | 0.60 | 0.84 | 3.22 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 13.73 | 0.00 | 2.158 | 4.60 | 0.24 | 3.6 | 96.4 | 0.0 | -1.82 | 0.62 | 0.59 | 0.84 | 2.56 | 7748 | 988 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7KoG | 22975 | 2023-08-15 | 2020-11-09 | 4.25 | 3.30 | — | 6.0 | 0.005 | 1.03 | 1.0 | 0.04 | 18.29 | 0.00 | 1.580 | 10.26 | 0.70 | 0.5 | 99.5 | 0.0 | -6.22 | 0.69 | 0.62 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 16.94 | 0.00 | 2.101 | 12.44 | 0.00 | 0.6 | 99.4 | 0.0 | 2.86 | 1.99 | 0.74 | 0.74 | — | 17384 | 2154 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRF | 11380 | 2023-08-09 | 2020-07-13 | 3.6 | 3.66 | 1.96 | 3.6 | 0.014 | 1.28 | 0.0 | 0.05 | 13.30 | 0.00 | 1.993 | 42.14 | 0.00 | 4.9 | 95.1 | 0.0 | -6.22 | 0.67 | 0.79 | 1.84 | 3.7 | 0.005 | 0.80 | 0.0 | 0.05 | 14.67 | 0.00 | 2.223 | 24.41 | 0.00 | 12.1 | 87.9 | 0.0 | -5.90 | 0.52 | 0.69 | 0.82 | 3.16 | 2220 | 300 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DWB | 8924 | 2023-08-15 | 2018-06-26 | 3.3 | 3.43 | — | 3.4 | 0.007 | 0.66 | 0.0 | 0.04 | 7.21 | 0.01 | 2.161 | 2.34 | 0.00 | 5.1 | 94.9 | 0.0 | -6.22 | 0.61 | 0.75 | 2.51 | 3.4 | 0.003 | 0.49 | 0.0 | 0.03 | 13.59 | 0.00 | 2.142 | 4.35 | 0.10 | 3.6 | 96.4 | 0.0 | 4.58 | 1.15 | 0.75 | 0.90 | 2.83 | 18360 | 2340 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CH0 | 30367 | 2023-08-14 | 2020-07-03 | 3.7 | 3.78 | — | 3.8 | 0.008 | 1.11 | 0.0 | 0.06 | 16.08 | 0.01 | 1.910 | 4.94 | 6.24 | 10.7 | 89.0 | 0.2 | -6.21 | 0.64 | 0.83 | 2.02 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.81 | 0.00 | 2.147 | 7.53 | 0.54 | 8.9 | 91.1 | 0.0 | -2.48 | 1.66 | 0.66 | 0.84 | 1.77 | 15856 | 2092 | 14 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Wi6 | 32526 | 2023-08-11 | 2022-01-03 | 3.71 | 4.33 | — | 4.2 | 0.009 | 1.02 | 0.0 | 0.06 | 14.55 | 0.01 | 2.290 | 5.63 | 1.54 | 14.5 | 85.5 | 0.0 | -6.21 | 0.76 | 0.78 | 1.96 | 4.2 | 0.002 | 0.59 | 0.0 | 0.04 | 14.89 | 0.00 | 2.210 | 6.86 | 0.00 | 8.3 | 91.7 | 0.0 | -3.62 | 1.50 | 0.77 | 0.78 | 2.02 | 9696 | 1446 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 8HDS | 34679 | 2023-08-09 | 2022-11-06 | 3.57 | 3.28 | 3.59 | 3.4 | 0.007 | 1.11 | 0.0 | 0.06 | 10.70 | 0.01 | 2.312 | 4.13 | 0.63 | 10.9 | 89.1 | 0.0 | -6.20 | 0.55 | 0.77 | 2.49 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 16.09 | 0.00 | 2.083 | 10.70 | 0.96 | 9.7 | 90.3 | 0.0 | -2.59 | 1.26 | 0.56 | 0.78 | 1.67 | 53532 | 6864 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B00 | 11952 | 2023-08-10 | 2020-11-17 | 3.98 | 3.73 | — | 4.0 | 0.006 | 0.97 | 0.0 | 0.08 | 14.85 | 0.01 | 1.838 | 5.81 | 0.39 | 9.5 | 90.5 | 0.0 | -6.20 | 0.59 | 0.79 | 1.66 | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 16.30 | 0.00 | 2.149 | 9.80 | 0.64 | 8.2 | 91.8 | 0.0 | -2.54 | 0.60 | 0.64 | 0.79 | 1.24 | 7389 | 926 | 7 | 0 | 9 | 0 | 0 | logfile |
✔ | 6LMX | 0923 | 2023-08-14 | 2019-12-26 | 3.4 | 3.53 | 3.23 | 3.5 | 0.019 | 1.32 | 0.0 | 0.07 | 15.24 | 0.01 | 2.161 | 4.67 | 1.26 | 2.1 | 97.9 | 0.0 | -6.20 | 0.60 | 0.78 | 2.56 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.78 | 0.01 | 2.133 | 7.69 | 0.42 | 2.8 | 97.2 | 0.0 | 2.19 | 1.54 | 0.65 | 0.82 | 1.17 | 15588 | 2160 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LYP | 30017 | 2023-08-14 | 2020-02-15 | 3.3 | 3.12 | 3.20 | 3.5 | 0.011 | 1.35 | 0.0 | 0.08 | 11.79 | 0.01 | 2.148 | 8.25 | 1.40 | 9.8 | 90.2 | 0.0 | -6.19 | 0.50 | 0.70 | 2.83 | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 14.72 | 0.00 | 2.225 | 12.51 | 0.43 | 9.8 | 90.2 | 0.0 | -3.23 | 1.21 | 0.54 | 0.74 | 2.12 | 15169 | 2009 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GoE | 34176 | 2023-08-09 | 2022-08-24 | 3.0 | 3.01 | 3.02 | 3.1 | 0.006 | 0.76 | 1.0 | 0.05 | 12.65 | 0.01 | 2.273 | 6.40 | 0.57 | 2.0 | 98.0 | 0.0 | -6.19 | 0.46 | 0.82 | 4.16 | 3.1 | 0.003 | 0.63 | 1.0 | 0.04 | 14.15 | 0.00 | 2.175 | 7.73 | 1.70 | 2.5 | 97.5 | 0.0 | 0.94 | 0.42 | 0.45 | 0.83 | 3.08 | 3323 | 407 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7XYM | 33522 | 2023-08-13 | 2022-06-01 | 3.3 | 3.70 | 3.42 | 3.6 | 0.009 | 1.58 | 6.0 | 0.07 | 14.87 | 0.01 | 1.028 | 29.59 | 0.49 | 25.5 | 71.6 | 2.9 | -6.19 | 0.71 | 0.74 | 1.93 | 3.6 | 0.005 | 1.11 | 0.0 | 0.06 | 16.43 | 0.01 | 2.042 | 25.55 | 0.57 | 26.6 | 71.6 | 1.8 | -4.90 | 1.14 | 0.70 | 0.79 | 1.95 | 11436 | 1464 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2023-08-11 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.15 | 0.01 | 2.206 | 10.64 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 18.34 | 0.00 | 2.084 | 18.07 | 0.59 | 8.7 | 91.3 | 0.0 | -2.08 | 0.61 | 0.65 | 0.82 | 1.17 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LYU | 30018 | 2023-08-12 | 2020-02-15 | 4.2 | 4.46 | — | 4.2 | 0.009 | 1.16 | 6.0 | 0.06 | 15.38 | 0.01 | 1.986 | 57.04 | 1.18 | 23.1 | 76.2 | 0.7 | -6.16 | 0.86 | 0.81 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.04 | 13.80 | 0.00 | 2.070 | 23.31 | 0.00 | 11.4 | 88.4 | 0.1 | -2.63 | 0.88 | 0.85 | 0.79 | — | 11118 | 1430 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JNF | 9851 | 2023-08-10 | 2019-03-14 | 3.81 | 3.96 | 3.73 | 4.0 | 0.009 | 1.23 | 0.0 | 0.06 | 17.14 | 0.01 | 2.304 | 5.24 | 1.02 | 16.7 | 83.3 | 0.0 | -6.16 | 0.64 | 0.82 | 1.38 | 4.0 | 0.003 | 0.91 | 0.0 | 0.05 | 17.91 | 0.00 | 2.133 | 11.24 | 0.64 | 10.5 | 89.5 | 0.0 | -2.83 | 1.47 | 0.67 | 0.82 | 1.30 | 7271 | 924 | 11 | 0 | 1 | 0 | 0 | logfile |