Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o72	0638	2023-08-20	2019-03-07	3.0	3.18	—	3.2	0.009	1.20	0.0	0.06	15.63	0.01	2.062	8.40	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.2	0.004	0.78	0.0	0.04	17.76	0.00	2.173	13.34	2.18	6.9	93.1	0.0	-0.08	0.76	0.63	0.81	2.09	28592	3432	8	0	28	0	0	logfile
✔	6oFE	20043	2023-08-12	2019-03-29	3.61	3.70	—	3.6	0.006	0.63	0.0	0.04	10.07	0.01	2.325	1.57	0.00	5.3	94.7	0.0	-6.24	0.64	0.85	2.72	3.6	0.003	0.56	0.0	0.03	16.25	0.00	2.166	6.08	0.46	3.9	96.1	0.0	3.89	0.61	0.65	0.86	1.19	12220	1560	20	0	0	0	0	logfile
✔	7Y9T	33691	2023-08-10	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.305	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.003	0.67	0.0	0.04	13.62	0.00	2.220	5.37	0.36	4.5	95.5	0.0	-1.47	0.59	0.67	0.87	3.20	7726	992	4	0	0	0	0	logfile
✔	6CAA	7441	2023-08-10	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.003	0.85	0.0	0.04	15.65	0.00	2.145	12.63	0.25	11.7	88.3	0.0	-1.27	2.14	0.66	0.79	1.54	7508	954	2	0	0	0	0	logfile
✔	7V2Y	31670	2023-08-17	2021-08-10	3.4	3.56	—	3.5	0.005	0.96	0.0	0.05	16.29	0.01	2.276	3.85	0.34	7.5	92.4	0.1	-6.23	0.69	0.78	2.04	3.5	0.004	0.71	0.0	0.04	17.53	0.00	2.158	10.47	0.34	7.7	92.2	0.0	-1.81	1.26	0.70	0.81	1.61	23097	2846	6	0	0	0	0	logfile
✔	7Y9U	33692	2023-08-10	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.27	2.0	0.06	9.98	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.63	0.0	0.04	13.73	0.00	2.158	4.60	0.24	3.6	96.4	0.0	-1.82	0.62	0.59	0.84	2.56	7748	988	6	0	2	0	0	logfile
✔	7KoG	22975	2023-08-15	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.26	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	4.1	0.003	0.78	0.0	0.04	16.94	0.00	2.101	12.44	0.00	0.6	99.4	0.0	2.86	1.99	0.74	0.74	—	17384	2154	2	0	0	0	0	logfile
✔	6ZRF	11380	2023-08-09	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.28	0.0	0.05	13.30	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.80	0.0	0.05	14.67	0.00	2.223	24.41	0.00	12.1	87.9	0.0	-5.90	0.52	0.69	0.82	3.16	2220	300	12	0	0	0	0	logfile
✔	6DWB	8924	2023-08-15	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.49	0.0	0.03	13.59	0.00	2.142	4.35	0.10	3.6	96.4	0.0	4.58	1.15	0.75	0.90	2.83	18360	2340	30	0	0	0	0	logfile
✔	7CH0	30367	2023-08-14	2020-07-03	3.7	3.78	—	3.8	0.008	1.11	0.0	0.06	16.08	0.01	1.910	4.94	6.24	10.7	89.0	0.2	-6.21	0.64	0.83	2.02	3.8	0.004	0.72	0.0	0.04	15.81	0.00	2.147	7.53	0.54	8.9	91.1	0.0	-2.48	1.66	0.66	0.84	1.77	15856	2092	14	0	2	0	0	logfile
✔	7Wi6	32526	2023-08-11	2022-01-03	3.71	4.33	—	4.2	0.009	1.02	0.0	0.06	14.55	0.01	2.290	5.63	1.54	14.5	85.5	0.0	-6.21	0.76	0.78	1.96	4.2	0.002	0.59	0.0	0.04	14.89	0.00	2.210	6.86	0.00	8.3	91.7	0.0	-3.62	1.50	0.77	0.78	2.02	9696	1446	4	0	4	0	0	logfile
✔	8HDS	34679	2023-08-09	2022-11-06	3.57	3.28	3.59	3.4	0.007	1.11	0.0	0.06	10.70	0.01	2.312	4.13	0.63	10.9	89.1	0.0	-6.20	0.55	0.77	2.49	3.4	0.004	0.71	0.0	0.04	16.09	0.00	2.083	10.70	0.96	9.7	90.3	0.0	-2.59	1.26	0.56	0.78	1.67	53532	6864	24	0	0	0	0	logfile
✔	7B00	11952	2023-08-10	2020-11-17	3.98	3.73	—	4.0	0.006	0.97	0.0	0.08	14.85	0.01	1.838	5.81	0.39	9.5	90.5	0.0	-6.20	0.59	0.79	1.66	4.0	0.003	0.75	0.0	0.04	16.30	0.00	2.149	9.80	0.64	8.2	91.8	0.0	-2.54	0.60	0.64	0.79	1.24	7389	926	7	0	9	0	0	logfile
✔	6LMX	0923	2023-08-14	2019-12-26	3.4	3.53	3.23	3.5	0.019	1.32	0.0	0.07	15.24	0.01	2.161	4.67	1.26	2.1	97.9	0.0	-6.20	0.60	0.78	2.56	3.5	0.003	0.69	0.0	0.04	15.78	0.01	2.133	7.69	0.42	2.8	97.2	0.0	2.19	1.54	0.65	0.82	1.17	15588	2160	9	0	0	0	0	logfile
✔	6LYP	30017	2023-08-14	2020-02-15	3.3	3.12	3.20	3.5	0.011	1.35	0.0	0.08	11.79	0.01	2.148	8.25	1.40	9.8	90.2	0.0	-6.19	0.50	0.70	2.83	3.5	0.005	0.78	0.0	0.05	14.72	0.00	2.225	12.51	0.43	9.8	90.2	0.0	-3.23	1.21	0.54	0.74	2.12	15169	2009	7	0	0	0	0	logfile
✔	8GoE	34176	2023-08-09	2022-08-24	3.0	3.01	3.02	3.1	0.006	0.76	1.0	0.05	12.65	0.01	2.273	6.40	0.57	2.0	98.0	0.0	-6.19	0.46	0.82	4.16	3.1	0.003	0.63	1.0	0.04	14.15	0.00	2.175	7.73	1.70	2.5	97.5	0.0	0.94	0.42	0.45	0.83	3.08	3323	407	1	0	1	0	0	logfile
✔	7XYM	33522	2023-08-13	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.005	1.11	0.0	0.06	16.43	0.01	2.042	25.55	0.57	26.6	71.6	1.8	-4.90	1.14	0.70	0.79	1.95	11436	1464	3	0	0	0	0	logfile
✔	6JBJ	9791	2023-08-11	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.15	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	3.7	0.004	0.77	0.0	0.04	18.34	0.00	2.084	18.07	0.59	8.7	91.3	0.0	-2.08	0.61	0.65	0.82	1.17	9166	1130	4	0	2	0	0	logfile
✔	6LYU	30018	2023-08-12	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	57.04	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.003	0.80	0.0	0.04	13.80	0.00	2.070	23.31	0.00	11.4	88.4	0.1	-2.63	0.88	0.85	0.79	—	11118	1430	5	0	0	0	0	logfile
✔	6JNF	9851	2023-08-10	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.24	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.003	0.91	0.0	0.05	17.91	0.00	2.133	11.24	0.64	10.5	89.5	0.0	-2.83	1.47	0.67	0.82	1.30	7271	924	11	0	1	0	0	logfile

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