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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6VoY | 21301 | 2024-03-17 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.62 | 0.01 | 1.583 | 35.03 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | 4.0 | 0.006 | 1.07 | 1.0 | 0.05 | 24.69 | 0.00 | 1.901 | 22.17 | 5.25 | 12.6 | 87.1 | 0.3 | -2.58 | 1.11 | 0.67 | 0.80 | 1.17 | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✔ | 6F2D | 4173 | 2024-03-15 | 2017-11-24 | 4.2 | 4.27 | 4.05 | 4.1 | 0.010 | 1.19 | 0.0 | 0.05 | 9.30 | 0.01 | 2.023 | 26.29 | 0.51 | 16.3 | 83.0 | 0.7 | -6.32 | 0.71 | 0.72 | — | 4.1 | 0.003 | 0.87 | 0.0 | 0.04 | 12.92 | 0.01 | 2.098 | 13.41 | 0.00 | 7.5 | 91.9 | 0.6 | 0.25 | 2.01 | 0.75 | 0.77 | — | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WTD | 21894 | 2024-03-14 | 2020-05-02 | 4.2 | 4.24 | — | 4.2 | 0.007 | 1.17 | 0.0 | 0.06 | 15.33 | 0.01 | 2.208 | 7.39 | 0.86 | 7.2 | 92.8 | 0.0 | -6.31 | 0.56 | 0.74 | — | 4.2 | 0.003 | 0.82 | 0.0 | 0.04 | 13.22 | 0.00 | 2.164 | 12.69 | 0.00 | 4.0 | 96.0 | 0.0 | -1.93 | 1.91 | 0.55 | 0.71 | — | 9139 | 1233 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XB1 | 6714 | 2024-03-21 | 2017-03-15 | 3.0 | 3.16 | 2.84 | 3.1 | 0.007 | 0.71 | 0.0 | 0.05 | 10.82 | 0.00 | 2.173 | 4.34 | 0.00 | 2.0 | 98.0 | 0.0 | -6.31 | 0.80 | 0.88 | 4.19 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 17.96 | 0.00 | 2.173 | 2.70 | 1.79 | 2.2 | 97.8 | 0.0 | 3.51 | 0.67 | 0.79 | 0.86 | 2.73 | 30847 | 3720 | 48 | 0 | 0 | 55 | 0 | logfile |
✔ | 6VHL | 21207 | 2024-03-10 | 2020-01-10 | 3.3 | 3.60 | — | 3.5 | 0.007 | 1.03 | 0.0 | 0.07 | 15.85 | 0.01 | 1.791 | 14.51 | 4.48 | 14.7 | 85.3 | 0.0 | -6.30 | 0.26 | 0.70 | 3.54 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 16.46 | 0.00 | 2.331 | 5.80 | 2.99 | 6.7 | 93.3 | 0.0 | -3.62 | 2.72 | 0.27 | 0.70 | 3.42 | 1190 | 158 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HCY | 0199 | 2024-03-15 | 2018-08-17 | 3.1 | 3.48 | 3.04 | 3.4 | 0.015 | 1.26 | 0.0 | 0.06 | 16.87 | 0.01 | 2.017 | 2.66 | 0.79 | 6.2 | 93.8 | 0.0 | -6.30 | 0.67 | 0.89 | 5.10 | 3.4 | 0.004 | 0.65 | 0.0 | 0.04 | 15.10 | 0.00 | 2.246 | 6.23 | 3.17 | 4.5 | 95.5 | 0.0 | 0.12 | 1.91 | 0.67 | 0.90 | 3.43 | 11007 | 1308 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 6M02 | 30028 | 2024-03-17 | 2020-02-19 | 3.2 | 3.49 | 3.90 | 3.9 | 0.006 | 0.96 | 0.0 | 0.05 | 16.35 | 0.01 | 2.263 | 6.38 | 1.64 | 7.0 | 93.0 | 0.0 | -6.29 | 0.60 | 0.70 | 1.57 | 3.9 | 0.002 | 0.68 | 0.0 | 0.04 | 17.28 | 0.00 | 2.296 | 9.33 | 3.71 | 3.2 | 96.8 | 0.0 | -2.03 | 1.19 | 0.61 | 0.71 | 1.42 | 18935 | 2345 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E9Z | 9021 | 2024-03-22 | 2018-08-01 | 3.4 | 3.50 | — | 3.4 | 0.011 | 0.85 | 0.0 | 0.05 | 10.27 | 0.01 | 1.132 | 13.25 | 0.00 | 4.5 | 95.1 | 0.4 | -6.29 | 0.55 | 0.77 | 3.60 | 3.5 | 0.002 | 0.62 | 0.0 | 0.03 | 15.73 | 0.00 | 1.943 | 7.92 | 0.62 | 2.5 | 97.5 | 0.0 | 2.83 | 1.90 | 0.57 | 0.82 | 1.40 | 32652 | 2025 | 9 | 0 | 0 | 0 | 16830 | logfile |
✔ | 7EEP | 31079 | 2024-03-14 | 2021-03-19 | 3.75 | 3.62 | — | 3.7 | 0.009 | 1.20 | 0.0 | 0.07 | 11.99 | 0.01 | 2.267 | 3.30 | 1.19 | 10.3 | 89.6 | 0.1 | -6.29 | 0.63 | 0.84 | 2.90 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.24 | 0.00 | 2.145 | 7.00 | 4.39 | 8.1 | 91.9 | 0.0 | -3.20 | 1.21 | 0.61 | 0.83 | 1.92 | 68076 | 8532 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AAV | 11693 | 2024-03-20 | 2020-09-04 | 4.2 | 4.27 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.15 | 17.51 | 0.01 | 2.116 | 1.53 | 0.18 | 8.9 | 91.1 | 0.1 | -6.29 | 0.76 | 0.77 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 17.36 | 0.00 | 1.738 | 6.07 | 0.00 | 13.3 | 86.7 | 0.0 | -1.40 | 0.55 | 0.78 | 0.80 | — | 25867 | 3970 | 19 | 181 | 3 | 0 | 0 | logfile |
✔ | 6P49 | 20247 | 2024-03-14 | 2019-05-26 | 3.3 | 3.60 | 3.10 | 3.6 | 0.007 | 1.50 | 0.0 | 0.08 | 16.18 | 0.01 | 2.164 | 18.26 | 3.28 | 6.9 | 92.4 | 0.7 | -6.27 | 0.54 | 0.57 | 1.13 | 3.6 | 0.003 | 0.84 | 0.0 | 0.05 | 16.96 | 0.00 | 2.119 | 16.12 | 3.47 | 11.2 | 88.8 | 0.0 | -3.25 | 1.74 | 0.55 | 0.59 | 0.97 | 9576 | 1166 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7CYF | 30499 | 2024-03-15 | 2020-09-03 | 3.15 | 2.98 | — | 3.3 | 0.009 | 1.28 | 5.0 | 0.07 | 11.57 | 0.01 | 1.890 | 5.78 | 1.90 | 9.3 | 90.7 | 0.0 | -6.27 | 0.61 | 0.83 | 4.14 | 3.3 | 0.003 | 0.73 | 0.0 | 0.04 | 15.11 | 0.00 | 2.143 | 7.40 | 3.90 | 5.8 | 94.2 | 0.0 | -0.70 | 1.20 | 0.62 | 0.84 | 2.35 | 9996 | 1329 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6o72 | 0638 | 2024-03-20 | 2019-03-07 | 3.0 | 3.18 | — | 3.2 | 0.009 | 1.20 | 0.0 | 0.06 | 16.34 | 0.01 | 2.062 | 8.40 | 0.00 | 7.4 | 92.6 | 0.0 | -6.25 | 0.63 | 0.80 | 2.52 | 3.1 | 0.004 | 0.78 | 0.0 | 0.04 | 17.57 | 0.00 | 2.147 | 13.53 | 3.32 | 6.7 | 93.3 | 0.0 | -0.14 | 0.73 | 0.63 | 0.81 | 2.13 | 28592 | 3432 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 7E5Z | 30995 | 2024-03-17 | 2021-02-21 | 3.6 | 3.29 | 3.74 | 3.5 | 0.005 | 0.91 | 1.0 | 0.05 | 15.30 | 0.01 | 1.908 | 21.03 | 0.57 | 10.2 | 89.7 | 0.1 | -6.25 | 0.83 | 0.78 | 1.73 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.96 | 0.00 | 2.011 | 14.58 | 1.43 | 10.1 | 89.8 | 0.1 | -2.47 | 1.39 | 0.83 | 0.80 | 1.57 | 19054 | 1312 | 4 | 0 | 10 | 0 | 8810 | logfile |
✔ | 6i26 | 0328 | 2024-03-19 | 2018-10-31 | 4.3 | 4.37 | — | 4.2 | 0.005 | 0.89 | 0.0 | 0.05 | 8.22 | 0.01 | 0.411 | 6.12 | 0.50 | 6.4 | 93.3 | 0.3 | -6.25 | 0.75 | 0.60 | — | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 10.44 | 0.00 | 2.206 | 7.12 | 0.00 | 7.5 | 92.4 | 0.1 | -0.07 | 0.98 | 0.84 | 0.77 | — | 22765 | 3366 | 1 | 0 | 221 | 0 | 0 | logfile |
✔ | 5H1R | 9571 | 2024-03-25 | 2016-10-11 | 3.6 | 4.23 | — | 4.2 | 0.014 | 1.36 | 0.0 | 0.07 | 13.16 | 0.01 | 1.968 | 31.49 | 0.94 | 12.9 | 85.7 | 1.4 | -6.24 | 0.54 | 0.74 | 1.84 | 4.2 | 0.005 | 0.94 | 0.0 | 0.05 | 17.56 | 0.01 | 2.100 | 16.95 | 7.58 | 11.3 | 88.1 | 0.6 | -1.18 | 1.00 | 0.58 | 0.77 | 1.09 | 47440 | 5760 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFE | 20043 | 2024-03-15 | 2019-03-29 | 3.61 | 3.70 | — | 3.6 | 0.006 | 0.63 | 0.0 | 0.04 | 10.07 | 0.01 | 2.325 | 1.57 | 0.00 | 5.3 | 94.7 | 0.0 | -6.24 | 0.64 | 0.85 | 2.72 | 3.6 | 0.003 | 0.80 | 1.0 | 0.03 | 16.13 | 0.00 | 2.124 | 6.04 | 2.00 | 4.1 | 95.9 | 0.0 | 3.67 | 0.56 | 0.65 | 0.86 | 1.28 | 12220 | 1560 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y9U | 33692 | 2024-03-11 | 2022-06-26 | 3.3 | 3.48 | 3.23 | 3.5 | 0.011 | 1.06 | 2.0 | 0.06 | 10.08 | 0.01 | 2.311 | 3.19 | 0.00 | 5.3 | 94.7 | 0.0 | -6.23 | 0.60 | 0.84 | 3.22 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 13.88 | 0.00 | 2.182 | 4.92 | 2.53 | 2.8 | 97.2 | 0.0 | -1.50 | 0.60 | 0.59 | 0.84 | 2.56 | 7748 | 988 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Y9T | 33691 | 2024-03-11 | 2022-06-26 | 3.1 | 3.31 | 3.07 | 3.3 | 0.018 | 1.56 | 18.0 | 0.09 | 11.12 | 0.01 | 2.305 | 4.09 | 0.96 | 6.7 | 93.3 | 0.0 | -6.23 | 0.69 | 0.87 | 3.51 | 3.3 | 0.002 | 0.64 | 0.0 | 0.04 | 13.47 | 0.00 | 2.233 | 5.30 | 1.92 | 4.1 | 95.9 | 0.0 | -1.38 | 0.58 | 0.67 | 0.87 | 3.12 | 7726 | 992 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAA | 7441 | 2024-03-11 | 2018-01-29 | 3.9 | 3.97 | — | 3.9 | 0.009 | 1.33 | 0.0 | 0.07 | 12.41 | 0.01 | 1.886 | 9.42 | 0.00 | 13.0 | 87.0 | 0.0 | -6.23 | 0.64 | 0.79 | 1.91 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 15.82 | 0.00 | 2.035 | 13.68 | 4.93 | 12.2 | 87.8 | 0.0 | -1.13 | 2.11 | 0.66 | 0.80 | 1.43 | 7508 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |