Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CWT	30487	2023-07-10	2020-08-31	3.7	3.88	—	3.7	0.009	1.18	16.0	0.11	11.08	0.01	1.257	28.32	1.43	6.9	92.5	0.6	-2.94	0.58	0.48	1.06	3.7	0.005	0.73	0.0	0.04	14.05	0.00	1.450	14.14	0.28	10.5	89.2	0.3	-2.51	1.90	0.65	0.64	1.40	70024	4584	18	0	14	0	34386	logfile
✔	7ZJL	14750	2023-07-10	2022-04-11	2.6	2.76	2.80	2.7	0.012	1.76	11.0	0.09	12.92	0.01	2.495	0.07	0.48	4.0	95.9	0.0	-0.24	0.68	0.69	3.58	2.7	0.004	0.64	0.0	0.04	15.11	0.00	1.899	4.87	1.32	3.2	96.8	0.0	-0.01	0.89	0.76	0.80	3.21	69412	4551	9	0	0	0	34272	logfile
✔	6XRE	22294	2023-07-09	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.46	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	8CEZ	16614	2023-07-09	2023-02-02	2.97	2.71	3.32	2.7	0.004	0.67	0.0	0.04	13.96	0.00	2.014	8.43	0.00	9.0	90.7	0.3	-1.75	0.53	0.70	2.84	2.7	0.003	0.60	0.0	0.04	16.64	0.00	2.040	7.21	1.46	8.8	91.2	0.0	-1.44	0.39	0.53	0.74	2.25	68244	4404	12	0	0	0	33900	logfile
✔	8F54	28860	2023-07-07	2022-11-11	2.5	2.67	2.56	2.7	0.003	0.45	0.0	0.03	11.59	0.00	2.491	0.57	0.00	0.0	100.0	0.0	3.06	0.68	0.76	3.44	2.7	0.003	0.55	0.0	0.04	18.10	0.01	2.230	4.42	0.52	1.0	99.0	0.0	3.49	1.41	0.67	0.81	3.47	66960	4020	60	0	0	0	33840	logfile
✔	7PGS	13394	2023-07-08	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.003	0.54	0.0	0.03	13.21	0.00	1.871	6.13	0.08	3.3	96.7	0.0	1.64	0.74	0.82	0.81	1.41	67202	4210	2	0	1	0	33807	logfile
✔	7KQE	22997	2023-07-09	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.55	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile
✔	8AP7	15560	2023-07-12	2022-08-09	2.7	2.82	2.67	2.8	0.015	0.87	0.0	0.05	16.38	0.01	1.432	1.69	0.44	1.6	98.4	0.0	2.70	0.65	0.87	5.11	2.8	0.004	0.52	0.0	0.04	16.25	0.00	1.823	7.65	0.74	2.0	98.0	0.0	2.56	1.06	0.66	0.89	4.58	71476	4076	58	0	44	24	33618	logfile
✘	5WC3	8795	2023-07-07	2017-06-29	3.5	3.53	—	3.5	0.015	1.18	0.0	0.06	9.37	0.01	1.925	12.86	0.00	8.0	90.5	1.5	-5.20	0.79	0.76	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65880	4170	30	0	0	0	33390	logfile
✔	6HZ9	0315	2023-07-08	2018-10-22	4.8	4.94	4.76	4.8	0.009	1.01	0.0	0.05	14.59	0.01	1.957	3.22	0.51	2.9	97.1	0.0	-0.60	0.83	0.76	—	4.8	0.004	0.62	0.0	0.04	14.32	0.00	1.779	15.48	0.00	5.2	94.8	0.0	-0.16	2.82	0.84	0.78	—	67582	4120	26	6	12	0	33368	logfile
✘	6HZ7	0313	2023-07-08	2018-10-22	4.3	4.43	4.32	4.3	0.008	0.97	0.0	0.05	14.60	0.01	1.959	2.86	0.59	2.9	97.1	0.0	-0.47	0.81	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ5	0311	2023-07-08	2018-10-22	4.2	4.28	4.18	4.3	0.009	0.97	0.0	0.05	14.60	0.01	1.960	2.94	0.70	2.7	97.3	0.0	-0.55	0.79	0.76	—	4.2	0.003	0.58	0.0	0.04	14.66	0.00	1.803	11.78	0.05	4.9	95.1	0.0	0.00	1.88	0.81	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ6	0312	2023-07-08	2018-10-22	4.3	4.35	4.18	4.3	0.010	1.00	0.0	0.05	14.61	0.01	1.941	3.48	0.59	2.8	97.2	0.0	-0.71	0.81	0.77	—	4.3	0.003	0.59	0.0	0.04	14.63	0.00	1.839	13.61	0.03	4.2	95.8	0.0	-0.20	1.90	0.82	0.78	—	67582	4120	26	6	12	0	33368	logfile
✔	6HZ8	0314	2023-07-08	2018-10-22	4.3	4.47	4.31	4.4	0.009	0.99	0.0	0.05	14.59	0.01	1.943	3.29	0.59	2.7	97.3	0.0	-0.48	0.77	0.73	—	4.4	0.005	0.67	0.0	0.04	14.60	0.00	1.739	14.95	0.00	5.3	94.7	0.0	-0.46	1.89	0.79	0.76	—	67582	4120	26	6	12	0	33368	logfile
✔	6Z1R	11039	2023-07-07	2020-05-14	3.29	3.42	3.09	3.3	0.007	0.71	0.0	0.04	15.07	0.00	1.890	9.22	0.00	6.6	93.4	0.0	-1.25	0.69	0.83	2.88	3.3	0.005	0.57	0.0	0.04	16.00	0.00	1.691	7.88	0.09	5.2	94.8	0.0	0.03	1.54	0.70	0.86	2.49	65754	4278	32	0	11	17	33137	logfile
✔	6TMH	10521	2023-07-06	2019-12-04	3.1	3.11	3.02	3.1	0.009	0.70	0.0	0.05	14.39	0.00	1.798	3.85	0.29	4.5	95.5	0.0	-1.93	0.74	0.85	3.59	3.1	0.003	0.56	0.0	0.05	15.87	0.00	1.722	6.19	0.23	3.3	96.7	0.0	0.62	0.80	0.75	0.88	3.23	65358	4264	26	0	10	0	32948	logfile
✔	6Z1U	11040	2023-07-06	2020-05-14	3.47	3.57	3.25	3.5	0.008	0.74	0.0	0.05	14.81	0.00	1.905	11.83	0.00	8.9	91.1	0.0	-1.62	0.68	0.83	2.33	3.5	0.006	0.58	0.0	0.04	15.72	0.00	1.662	9.48	0.06	6.5	93.5	0.0	-0.44	0.37	0.68	0.85	2.15	65073	4239	32	0	11	17	32803	logfile
✔	7VSR	32114	2023-07-07	2021-10-27	4.5	4.64	4.47	3.4	0.005	0.72	0.0	0.04	13.45	0.01	1.817	11.43	1.90	3.0	97.0	0.0	-0.26	0.77	0.55	—	3.4	0.004	0.61	0.0	0.04	12.83	0.00	1.740	17.65	0.00	5.5	94.5	0.0	-0.36	2.68	0.88	0.77	—	66142	4040	20	0	12	0	32736	logfile
✔	6XH7	22184	2023-07-07	2020-06-18	3.9	4.03	—	3.8	0.010	1.02	0.0	0.06	14.27	0.01	2.030	7.59	0.12	11.4	88.5	0.1	-4.65	0.80	0.75	1.46	3.7	0.004	0.67	0.0	0.04	16.02	0.00	1.880	13.59	0.35	9.1	90.9	0.1	-1.56	0.90	0.80	0.79	1.35	66008	3971	13	102	4	0	32688	logfile
✘	6QEM	4538	2023-07-07	2019-01-08	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65750	4104	24	26	16	0	32652	logfile

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