Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6JEo	9807	2023-07-16	2019-02-06	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94576	8774	88	0	504	0	0	logfile
✔	5MMi	3531	2023-07-16	2016-12-10	3.2	3.30	—	3.2	0.008	1.15	0.0	0.05	16.64	0.01	1.753	7.92	9.25	5.3	94.4	0.3	-3.29	0.89	0.88	1.90	3.2	0.003	0.61	0.0	0.03	16.30	0.00	1.879	11.31	0.47	4.0	96.0	0.0	-0.90	2.06	0.88	0.86	1.63	95397	3769	56	3027	503	0	0	logfile
✘	7Y8A	33683	2023-07-03	2022-06-23	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53404	4518	49	0	502	0	0	logfile
✘	5XNL	6741	2023-07-17	2017-05-23	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✔	7o1C	12695	2023-07-23	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.90	0.0	0.06	14.38	0.02	0.055	6.76	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	2.3	0.005	0.68	0.0	0.04	14.63	0.01	0.858	8.12	2.28	4.6	95.3	0.1	-0.35	1.01	0.82	0.85	2.99	148175	6042	76	4638	489	800	0	logfile
✘	5XNM	6742	2023-07-16	2017-05-23	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✔	6C0F	7324	2023-07-16	2017-12-29	3.7	4.02	—	3.7	0.007	1.03	0.0	0.05	14.97	0.01	1.985	10.68	0.28	5.2	94.8	0.1	-2.72	0.82	0.82	1.34	3.7	0.007	0.78	0.0	0.04	16.30	0.01	1.949	24.37	0.65	6.4	93.5	0.0	-0.45	0.84	0.83	0.86	1.29	91742	6845	46	1602	481	0	0	logfile
✔	6BWF	7298	2023-07-10	2017-12-14	4.1	4.19	—	4.2	0.008	1.51	2.0	0.07	12.82	0.01	2.204	12.32	0.59	12.1	86.6	1.3	-5.34	0.62	0.71	—	4.2	0.003	0.87	0.0	0.04	13.42	0.00	2.108	15.48	0.00	9.9	89.8	0.3	-1.22	1.60	0.63	0.73	—	22174	2584	4	0	480	0	0	logfile
✔	6ZYD	11557	2023-07-15	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	17.41	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	18.86	0.02	1.731	57.41	12.94	21.7	78.3	0.0	-6.09	1.47	0.79	0.86	3.23	31423	1792	14	0	476	0	14490	logfile
✔	5GAH	8004	2023-07-16	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.30	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.004	0.62	0.0	0.03	15.25	0.00	1.170	14.30	0.97	3.9	96.0	0.1	-0.54	1.16	0.73	0.87	1.46	94027	3595	46	3049	473	0	0	logfile
✔	5GAG	8003	2023-07-16	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.16	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.006	0.73	0.0	0.04	15.46	0.01	0.954	17.90	1.07	4.6	95.2	0.1	-0.85	0.69	0.78	0.88	2.01	94030	3598	46	3049	473	0	0	logfile
✘	7DZ8	30926	2023-07-10	2021-01-23	3.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69460	5986	55	0	471	0	0	logfile
✔	7QCo	13898	2023-07-15	2021-11-24	3.7	3.89	3.86	3.7	0.006	0.93	0.0	0.05	21.59	0.02	1.932	23.52	9.61	13.9	86.0	0.2	-4.15	0.72	0.69	0.82	3.7	0.003	0.79	1.0	0.05	19.06	0.01	1.554	17.10	0.41	9.3	90.7	0.0	-1.54	0.79	0.73	0.71	0.58	90396	8812	78	0	462	0	0	logfile
✘	7F9o	31498	2023-07-07	2021-07-04	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106329	11553	82	0	461	0	0	logfile
✔	4UiS	2974	2023-07-06	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.80	0.0	0.04	11.88	0.00	2.133	16.76	0.00	9.9	88.9	1.2	-1.58	1.65	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✘	7F4V	31455	2023-07-08	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✘	7D0J	30536	2023-07-10	2020-09-10	3.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68860	5923	56	0	453	0	0	logfile
✔	5GAF	8002	2023-07-17	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.87	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.005	0.71	0.0	0.04	14.99	0.01	1.044	21.32	0.03	5.4	94.5	0.2	-0.97	1.35	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	5MDY	3492	2023-07-25	2016-11-13	3.35	3.40	3.43	3.4	0.009	1.39	22.0	0.11	17.07	0.02	1.409	4.38	9.85	6.0	93.5	0.5	-2.09	0.78	0.85	2.23	3.4	0.006	0.77	0.0	0.04	15.91	0.01	1.804	9.44	0.75	5.6	94.4	0.1	-0.59	0.60	0.78	0.85	2.05	149460	6323	68	4638	452	3	0	logfile
✘	7YCA	33737	2023-07-06	2022-07-01	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64832	5632	60	0	450	4	0	logfile

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