Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6AHD	9624	2023-07-14	2018-08-17	3.8	3.84	—	3.7	0.011	1.38	2.0	0.12	13.79	0.01	1.805	14.26	2.52	7.4	91.7	0.9	-3.55	0.51	0.52	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	85302	14082	65	531	3	0	0	logfile
✔	7W3G	32279	2023-07-05	2021-11-25	3.2	4.83	—	2.8	0.004	0.76	0.0	0.05	14.06	0.01	2.137	5.57	0.31	6.1	93.8	0.1	-0.51	0.81	0.72	2.07	2.8	0.002	0.57	0.0	0.04	15.03	0.00	2.052	10.34	0.08	6.2	93.8	0.0	0.97	0.79	0.83	0.76	1.78	110741	14074	55	0	40	0	0	logfile
✔	7W3F	32278	2023-07-05	2021-11-25	3.3	4.49	—	3.0	0.003	0.74	0.0	0.05	13.65	0.01	2.190	5.42	0.15	6.2	93.7	0.1	-0.80	0.83	0.80	1.91	3.0	0.003	0.59	0.0	0.04	14.81	0.00	2.036	10.45	0.14	6.5	93.5	0.0	0.97	0.35	0.86	0.85	1.81	110751	14074	55	0	42	0	0	logfile
✔	7W3C	32277	2023-07-05	2021-11-25	3.4	4.55	—	3.0	0.004	0.75	0.0	0.05	13.61	0.01	2.077	5.67	0.13	6.4	93.5	0.1	-0.85	0.82	0.79	2.02	3.0	0.003	0.61	0.0	0.04	15.07	0.00	2.014	11.17	0.13	6.7	93.3	0.1	0.63	0.41	0.82	0.78	1.61	110747	14074	55	0	42	0	0	logfile
✔	7W3H	32280	2023-07-05	2021-11-25	3.2	4.38	—	2.8	0.005	0.78	0.0	0.05	14.07	0.01	1.772	5.60	0.24	6.9	93.0	0.1	-0.71	0.86	0.84	2.30	2.8	0.004	0.62	0.0	0.04	15.04	0.00	1.889	11.16	0.10	6.9	93.0	0.1	0.81	0.75	0.87	0.87	1.89	110771	14074	55	0	46	0	0	logfile
✔	7W3J	32282	2023-07-05	2021-11-25	3.5	4.46	—	3.0	0.005	0.84	0.0	0.05	14.71	0.01	1.739	6.46	0.55	6.9	93.0	0.1	-1.22	0.83	0.81	1.76	3.0	0.003	0.62	0.0	0.04	15.75	0.00	2.064	11.67	0.20	6.5	93.5	0.0	0.42	0.78	0.87	0.85	1.50	110559	14071	55	0	7	0	0	logfile
✔	7W3i	32281	2023-07-05	2021-11-25	3.5	4.43	—	2.9	0.005	0.82	0.0	0.05	14.62	0.01	1.702	5.71	0.26	6.7	93.2	0.1	-1.17	0.79	0.72	1.86	3.0	0.003	0.64	0.0	0.04	16.01	0.00	1.972	12.65	0.26	6.6	93.4	0.0	0.05	0.81	0.82	0.78	1.54	110481	14054	55	0	7	0	0	logfile
✔	6FVW	4322	2023-07-05	2018-03-05	4.5	4.60	—	4.6	0.035	3.52	888.0	0.20	17.57	0.03	0.436	3.52	2.98	5.7	92.3	2.0	-2.29	0.50	0.54	—	4.5	0.004	0.85	0.0	0.05	14.95	0.00	1.867	19.38	0.03	5.0	94.8	0.2	-0.60	2.34	0.56	0.76	—	110594	14032	59	0	12	20	0	logfile
✔	6FVX	4323	2023-07-04	2018-03-05	4.9	4.97	—	4.9	0.036	3.46	834.0	0.21	17.27	0.03	1.000	2.06	2.81	5.4	92.9	1.7	-2.42	0.52	0.59	—	4.9	0.004	0.85	1.0	0.05	14.48	0.01	1.862	19.81	0.08	4.3	95.5	0.2	-0.59	1.27	0.54	0.76	—	110471	14020	53	0	12	0	0	logfile
✔	6W1N	21513	2023-07-03	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.50	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.76	0.0	0.04	14.15	0.00	2.112	11.82	0.29	2.8	97.2	0.0	0.86	0.75	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	8EQN	28540	2023-07-04	2022-10-08	3.7	3.82	3.76	3.8	0.019	1.63	0.0	0.09	10.32	0.01	2.390	0.43	0.00	1.3	98.7	0.0	1.44	0.79	0.86	3.46	3.7	0.006	0.72	0.0	0.05	15.42	0.00	2.171	9.63	0.25	3.4	96.6	0.0	1.47	0.92	0.79	0.87	2.46	107700	13980	60	0	0	0	0	logfile
✔	6X34	22017	2023-07-17	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.80	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.002	0.62	0.0	0.04	9.56	0.00	2.078	9.67	0.00	3.4	96.6	0.0	0.83	0.84	0.80	0.79	—	97888	13956	12	0	1320	0	0	logfile
✔	7W3B	32276	2023-07-04	2021-11-25	3.6	4.26	—	3.0	0.003	0.79	0.0	0.05	13.86	0.01	2.122	5.53	0.12	6.3	93.6	0.1	-0.88	0.79	0.73	1.63	3.0	0.003	0.64	0.0	0.04	15.32	0.00	2.030	12.59	0.26	6.6	93.3	0.0	0.15	0.81	0.81	0.76	1.36	109441	13915	54	0	33	0	0	logfile
✘	5GUP	9539	2023-07-04	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✔	7EGB	31111	2023-07-05	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	7W3M	32284	2023-07-04	2021-11-25	3.5	4.51	—	3.0	0.003	0.78	0.0	0.05	14.10	0.01	1.953	5.95	0.14	6.1	93.8	0.1	-1.11	0.79	0.75	1.86	3.0	0.002	0.60	0.0	0.04	15.32	0.00	2.054	11.44	0.14	6.2	93.7	0.0	0.44	0.39	0.82	0.77	1.72	109020	13879	53	0	5	0	0	logfile
✔	7EGC	31112	2023-07-05	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.81	0.0	0.05	16.66	0.00	1.986	17.27	0.40	6.5	93.4	0.2	-0.77	1.26	0.51	0.32	0.51	113129	13879	63	142	18	0	0	logfile
✔	5J8V	8073	2023-07-11	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✘	7DGR	30674	2023-07-03	2020-11-12	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	107305	13811	102	0	37	0	0	logfile
✔	7SC7	25028	2023-07-04	2021-09-27	2.8	3.66	—	3.3	0.007	1.08	1.0	0.06	14.67	0.01	2.240	6.50	1.49	2.4	97.6	0.0	-1.25	0.73	0.87	1.85	3.2	0.005	0.99	1.0	0.05	16.95	0.01	1.998	23.67	2.66	3.2	96.8	0.0	0.75	0.70	0.72	0.88	1.52	107930	13756	156	0	72	0	0	logfile

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