Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B5V	7058	2023-08-15	2017-09-29	4.8	4.85	—	4.8	0.008	1.23	0.0	0.06	13.98	0.01	2.333	9.06	3.55	5.9	94.1	0.0	-4.79	0.61	0.72	—	4.8	0.003	0.80	0.0	0.04	13.10	0.00	2.149	12.86	0.00	6.5	93.5	0.0	-1.76	0.89	0.70	0.81	—	18933	2356	8	0	5	0	0	logfile
✘	7Q21	13777	2023-08-26	2021-10-22	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47749	5585	47	0	320	0	0	logfile
✘	5T4D	8354	2023-08-13	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.81	0.0	0.05	8.91	0.00	2.120	12.34	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14876	1852	8	0	12	0	0	logfile
✔	6V86	21096	2023-08-15	2019-12-10	4.63	4.30	—	4.1	0.004	0.83	0.0	0.04	14.79	0.01	1.470	23.47	0.70	13.1	86.6	0.2	-4.51	0.80	0.73	—	4.1	0.003	0.79	0.0	0.04	14.55	0.00	2.025	17.65	0.35	11.9	88.1	0.0	-1.22	0.69	0.81	0.73	—	17781	2229	7	0	2	0	0	logfile
✔	6LHV	0900	2023-08-13	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	7oZ3	13119	2023-08-10	2021-06-25	4.46	4.17	4.34	4.0	0.013	1.56	2.0	0.08	23.16	0.00	2.334	8.45	0.29	4.3	95.7	0.0	0.64	0.85	0.79	—	4.0	0.003	0.76	0.0	0.04	21.34	0.00	2.199	9.66	0.29	2.4	97.6	0.0	1.57	0.78	0.86	0.83	—	8209	804	8	88	2	0	0	logfile
✔	6QD2	4517	2023-08-16	2018-12-31	4.8	4.92	5.85	4.9	0.006	0.86	0.0	0.04	9.04	0.01	2.025	6.53	0.00	11.6	88.4	0.0	-4.60	0.35	0.62	—	4.9	0.004	0.68	0.0	0.04	10.92	0.00	2.087	11.59	0.00	9.1	90.9	0.0	-1.48	1.09	0.39	0.65	—	21746	1420	5	0	2	0	11100	logfile
✔	6FSZ	4301	2023-08-24	2018-02-20	4.6	4.95	—	4.7	0.010	1.25	0.0	0.06	10.87	0.01	2.147	13.08	0.26	7.3	92.7	0.0	-3.42	0.88	0.82	—	4.6	0.003	0.68	0.0	0.04	11.75	0.00	2.092	15.96	0.08	5.0	95.0	0.0	-0.65	1.63	0.88	0.82	—	36972	4821	15	23	11	0	0	logfile
✔	7TT4	26110	2023-08-16	2022-01-31	4.2	4.40	—	4.3	0.005	0.77	0.0	0.05	10.61	0.00	2.051	2.23	0.00	1.2	98.8	0.0	0.72	0.72	0.76	—	4.3	0.003	0.60	0.0	0.04	13.09	0.00	1.984	7.22	0.00	3.1	96.9	0.0	0.14	2.40	0.71	0.76	—	20633	1346	6	0	0	0	10107	logfile
✘	7A5R	11648	2023-08-11	2020-08-21	3.7	3.90	3.68	3.8	0.004	0.81	0.0	0.05	13.99	0.01	2.218	3.92	0.67	7.6	92.3	0.2	-1.97	0.73	0.78	2.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10608	1358	8	0	4	0	0	logfile
✔	5VAi	8653	2023-08-11	2017-03-27	4.1	4.62	—	4.6	0.008	1.11	0.0	0.05	9.72	0.01	2.049	31.73	0.21	4.4	95.3	0.3	-1.52	0.71	0.70	—	4.6	0.004	0.83	0.0	0.05	12.89	0.00	2.115	21.59	0.00	4.7	95.2	0.2	-0.83	1.50	0.70	0.71	—	9099	1178	6	0	0	0	0	logfile
✔	5X0Y	6700	2023-08-14	2017-01-23	4.69	4.70	—	4.5	0.012	1.12	0.0	0.05	25.78	0.01	1.932	49.72	0.26	10.8	88.7	0.5	-5.59	0.86	0.75	—	4.5	0.004	0.71	0.0	0.04	25.40	0.00	2.004	17.90	0.00	5.4	94.5	0.2	0.33	0.95	0.89	0.82	—	16798	1349	11	292	0	0	0	logfile
✔	6QCY	4513	2023-08-16	2018-12-31	4.7	4.78	5.41	4.7	0.009	1.05	0.0	0.05	9.70	0.01	2.012	8.28	0.00	14.0	86.0	0.0	-4.43	0.50	0.63	—	4.7	0.003	0.64	0.0	0.04	10.61	0.00	1.943	9.84	0.00	6.7	93.3	0.0	-2.05	2.16	0.49	0.64	—	21746	1420	6	0	2	0	11100	logfile
✔	7E9F	31030	2023-08-18	2021-03-04	4.0	4.14	3.17	4.0	0.004	0.74	0.0	0.04	27.87	0.01	2.264	5.87	0.36	3.0	97.0	0.0	-4.61	0.83	0.75	—	4.0	0.004	0.72	0.0	0.04	28.39	0.01	2.061	19.66	1.45	4.9	95.1	0.0	-0.92	1.34	0.85	0.79	—	13279	1057	12	249	2	0	0	logfile
✔	6YTV	10924	2023-08-15	2020-04-24	4.39	3.96	4.35	3.9	0.004	0.78	0.0	0.04	14.56	0.00	2.183	16.16	0.00	6.0	93.5	0.4	-2.08	0.58	0.76	—	3.9	0.003	0.77	0.0	0.04	14.47	0.00	2.203	12.64	0.14	6.8	92.9	0.3	-0.11	1.55	0.57	0.74	—	19560	2520	10	0	0	0	0	logfile
✔	6N7W	0365	2023-08-10	2018-11-28	4.5	4.41	—	4.1	0.006	0.75	0.0	0.05	19.17	0.02	2.125	3.09	0.46	4.4	95.5	0.1	-2.55	0.85	0.81	—	4.1	0.004	0.62	0.0	0.04	19.57	0.00	1.972	13.04	0.00	5.0	95.0	0.0	1.12	1.92	0.87	0.84	—	7837	808	5	70	2	0	0	logfile
✔	6PE2	20321	2023-08-12	2019-06-19	4.0	4.84	3.77	4.5	0.003	0.54	0.0	0.04	21.60	0.00	1.387	6.47	0.00	3.2	96.8	0.0	-1.36	0.90	0.84	—	4.5	0.003	0.62	0.0	0.04	22.64	0.00	1.930	10.67	0.10	3.2	96.8	0.0	2.20	0.72	0.91	0.87	—	12746	1148	13	170	6	0	0	logfile
✔	8FD5	29002	2023-08-09	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	7PAG	13269	2023-08-09	2021-07-29	4.0	4.22	—	4.1	0.005	0.75	0.0	0.05	13.86	0.01	2.177	12.66	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	4.2	0.004	1.05	0.0	0.05	16.63	0.00	2.144	20.38	0.23	10.5	89.5	0.0	-3.28	1.36	0.34	0.68	—	4040	509	1	0	4	0	0	logfile
✘	6TF9	10491	2023-08-14	2019-11-13	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile

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