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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7XVE | 33484 | 2023-12-10 | 2022-05-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13659 | 1569 | 8 | 0 | 42 | 0 | 0 | logfile |
✔ | 7L0R | 23101 | 2023-12-08 | 2020-12-12 | 4.2 | 4.12 | 4.05 | 4.0 | 0.007 | 1.37 | 2.0 | 0.08 | 13.58 | 0.01 | 2.106 | 10.15 | 1.05 | 6.6 | 93.4 | 0.0 | -3.44 | 0.61 | 0.66 | — | 4.0 | 0.004 | 0.82 | 0.0 | 0.05 | 13.15 | 0.00 | 2.102 | 21.16 | 0.13 | 4.7 | 95.3 | 0.0 | -0.35 | 3.45 | 0.62 | 0.74 | — | 6968 | 887 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Y6i | 33641 | 2023-12-08 | 2022-06-20 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8176 | 938 | 8 | 0 | 37 | 6 | 0 | logfile |
✘ | 8DPN | 27639 | 2023-12-11 | 2022-07-15 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16067 | 1998 | 12 | 0 | 8 | 40 | 0 | logfile |
✘ | 7PQ5 | 13587 | 2023-12-08 | 2021-09-16 | 3.17 | 3.58 | 3.09 | 3.4 | 0.005 | 0.85 | 0.0 | 0.05 | 15.55 | 0.01 | 2.255 | 3.50 | 2.82 | 4.5 | 95.3 | 0.2 | -0.13 | 0.85 | 0.87 | 5.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8512 | 1047 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XE6 | 22144 | 2023-12-08 | 2020-06-12 | 4.53 | 4.61 | — | 4.5 | 0.011 | 1.40 | 2.0 | 0.07 | 14.63 | 0.01 | 1.098 | 10.14 | 1.05 | 11.3 | 87.4 | 1.2 | -4.98 | 0.52 | 0.76 | — | 4.5 | 0.003 | 0.77 | 0.0 | 0.04 | 13.13 | 0.00 | 2.128 | 13.39 | 0.00 | 9.8 | 89.7 | 0.5 | -1.57 | 1.21 | 0.53 | 0.74 | — | 6530 | 826 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7VSR | 32114 | 2023-12-10 | 2021-10-27 | 4.5 | 4.64 | 4.47 | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 13.56 | 0.01 | 1.817 | 11.43 | 1.90 | 3.0 | 97.0 | 0.0 | -0.26 | 0.77 | 0.55 | — | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 12.86 | 0.00 | 1.717 | 18.63 | 0.00 | 6.1 | 93.9 | 0.0 | -0.68 | 2.68 | 0.88 | 0.78 | — | 66142 | 4040 | 20 | 0 | 12 | 0 | 32736 | logfile |
✔ | 7P4i | 13193 | 2023-12-09 | 2021-07-11 | 4.2 | 5.62 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 13.10 | 0.00 | 2.168 | 11.83 | 0.00 | 5.7 | 94.3 | 0.0 | -0.54 | 0.61 | 0.84 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 13.52 | 0.00 | 2.245 | 11.01 | 0.00 | 5.6 | 94.4 | 0.0 | 0.61 | 0.91 | 0.61 | 0.86 | — | 9510 | 1284 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Fii | 31598 | 2023-12-09 | 2021-07-31 | 4.3 | 4.37 | — | 4.1 | 0.002 | 0.36 | 0.0 | 0.04 | 8.97 | 0.00 | 2.073 | 1.66 | 0.00 | 0.9 | 99.1 | 0.0 | 3.08 | 0.64 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8765 | 1522 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2023-12-10 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.005 | 1.04 | 0.0 | 0.05 | 11.62 | 0.01 | 2.085 | 25.04 | 0.00 | 17.4 | 79.8 | 2.8 | -2.41 | 0.95 | 0.65 | 0.59 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ZDC | 14642 | 2023-12-08 | 2022-03-29 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8960 | 1147 | 2 | 0 | 3 | 0 | 0 | logfile |
✔ | 7L0S | 23102 | 2023-12-08 | 2020-12-12 | 4.5 | 4.35 | 4.13 | 4.2 | 0.008 | 1.34 | 2.0 | 0.08 | 13.52 | 0.01 | 2.107 | 9.65 | 1.39 | 6.0 | 94.0 | 0.0 | -3.19 | 0.61 | 0.63 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.05 | 13.35 | 0.00 | 2.144 | 16.64 | 0.00 | 3.9 | 96.1 | 0.0 | -0.04 | 3.57 | 0.64 | 0.73 | — | 7906 | 1001 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V5C | 21052 | 2023-12-09 | 2019-12-04 | 4.4 | 4.97 | — | 4.6 | 0.007 | 1.27 | 7.0 | 0.07 | 18.57 | 0.01 | 2.023 | 18.17 | 1.84 | 13.7 | 85.9 | 0.4 | -4.86 | 0.81 | 0.80 | — | 4.6 | 0.003 | 0.75 | 0.0 | 0.04 | 17.15 | 0.00 | 2.051 | 19.89 | 0.00 | 14.2 | 85.8 | 0.0 | -2.68 | 0.67 | 0.81 | 0.80 | — | 12251 | 1336 | 4 | 66 | 0 | 0 | 0 | logfile |
✘ | 8C0Z | 16376 | 2023-12-10 | 2022-12-19 | 3.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15083 | 1972 | 10 | 0 | 17 | 0 | 0 | logfile |
✘ | 7Z10 | 14436 | 2023-12-09 | 2022-02-24 | 3.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12574 | 1556 | 13 | 0 | 9 | 0 | 0 | logfile |
✔ | 6MLU | 9146 | 2023-12-07 | 2018-09-28 | 4.0 | 4.03 | — | 4.0 | 0.005 | 1.05 | 0.0 | 0.06 | 9.86 | 0.01 | 2.406 | 5.97 | 0.69 | 10.6 | 89.4 | 0.0 | -4.38 | 0.40 | 0.78 | — | 4.0 | 0.005 | 1.16 | 0.0 | 0.06 | 17.79 | 0.01 | 2.194 | 31.82 | 1.39 | 15.2 | 84.8 | 0.0 | -2.34 | 3.45 | 0.43 | 0.76 | — | 2516 | 306 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XEV | 22154 | 2023-12-09 | 2020-06-14 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10545 | 1312 | 8 | 0 | 25 | 0 | 0 | logfile |
✘ | 7UML | 26603 | 2023-12-10 | 2022-04-07 | 3.5 | 3.77 | 3.85 | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 15.49 | 0.00 | 2.114 | 7.56 | 0.00 | 2.0 | 97.4 | 0.6 | -2.75 | 0.66 | 0.69 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13227 | 812 | 7 | 13 | 0 | 0 | 6477 | logfile |
✔ | 5LMo | 4074 | 2023-12-07 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 26.09 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.004 | 0.72 | 0.0 | 0.04 | 23.42 | 0.01 | 1.032 | 31.81 | 0.00 | 8.5 | 90.9 | 0.5 | -1.74 | 2.17 | 0.88 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 5LMU | 4080 | 2023-12-08 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 26.67 | 0.02 | 1.289 | 21.15 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | 4.0 | 0.005 | 0.82 | 0.0 | 0.04 | 24.23 | 0.01 | 1.789 | 27.69 | 1.03 | 8.6 | 90.8 | 0.6 | -1.71 | 0.88 | 0.76 | 0.83 | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |