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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6ZGK | 11209 | 2024-03-15 | 2020-06-18 | 3.6 | 3.77 | 3.64 | 3.8 | 0.006 | 0.68 | 0.0 | 0.05 | 12.30 | 0.01 | 2.111 | 7.47 | 0.00 | 6.6 | 93.4 | 0.0 | -0.58 | 0.50 | 0.54 | 1.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11630 | 1535 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7ABR | 11707 | 2024-03-20 | 2020-09-08 | 3.7 | 3.80 | — | 3.7 | 0.011 | 1.09 | 0.0 | 0.05 | 15.37 | 0.00 | 2.066 | 19.60 | 0.51 | 9.6 | 90.1 | 0.2 | -3.56 | 0.86 | 0.83 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27209 | 3419 | 13 | 0 | 37 | 0 | 0 | logfile |
✘ | 7NUR | 12600 | 2024-03-11 | 2021-03-13 | 3.125 | 3.29 | — | 3.3 | 0.007 | 0.77 | 0.0 | 0.05 | 14.31 | 0.01 | 2.174 | 5.26 | 0.11 | 7.7 | 92.0 | 0.3 | -4.11 | 0.77 | 0.87 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8245 | 1044 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-03-12 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 6PTJ | 20471 | 2024-03-22 | 2019-07-15 | 3.8 | 4.13 | — | 4.0 | 0.008 | 1.12 | 1.0 | 0.06 | 14.87 | 0.01 | 2.011 | 6.46 | 0.39 | 10.6 | 89.2 | 0.2 | -5.32 | 0.86 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34361 | 4280 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YZP | 14393 | 2024-03-17 | 2022-02-21 | 4.0 | 4.15 | 4.02 | 4.0 | 0.003 | 0.62 | 1.0 | 0.04 | 17.72 | 0.00 | 1.593 | 8.32 | 0.00 | 4.2 | 95.8 | 0.0 | 0.73 | 0.83 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14107 | 1633 | 9 | 59 | 8 | 0 | 0 | logfile |
✘ | 6WW7 | 21929 | 2024-03-17 | 2020-05-08 | 3.4 | 3.55 | 3.33 | 3.5 | 0.005 | 0.58 | 0.0 | 0.04 | 15.89 | 0.00 | 2.145 | 6.99 | 2.92 | 2.9 | 97.1 | 0.0 | -2.34 | 0.76 | 0.84 | 2.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16576 | 2060 | 13 | 0 | 20 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2024-03-20 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6RKo | 4908 | 2024-03-11 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 6VDK | 21151 | 2024-03-15 | 2019-12-27 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12309 | 1274 | 14 | 104 | 6 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2024-03-16 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 11.10 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 6QD8 | 4521 | 2024-03-16 | 2019-01-01 | 3.3 | 3.57 | 3.46 | 3.5 | 0.015 | 1.67 | 0.0 | 0.08 | 16.53 | 0.01 | 2.220 | 5.68 | 3.96 | 6.7 | 92.8 | 0.5 | -2.00 | 0.62 | 0.70 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14154 | 1785 | 18 | 0 | 39 | 0 | 0 | logfile |
✘ | 8E9B | 27962 | 2024-03-24 | 2022-08-26 | 3.5 | 3.16 | 3.52 | 3.4 | 0.004 | 0.71 | 1.0 | 0.05 | 15.39 | 0.01 | 2.023 | 10.91 | 0.24 | 5.2 | 94.7 | 0.1 | 0.07 | 0.74 | 0.77 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 39160 | 4933 | 25 | 0 | 20 | 0 | 0 | logfile |
✘ | 7EJ1 | 31148 | 2024-03-18 | 2021-04-01 | 3.2 | 3.37 | — | 3.3 | 0.011 | 1.03 | 0.0 | 0.06 | 16.48 | 0.01 | 2.243 | 6.80 | 0.00 | 4.8 | 95.0 | 0.1 | -5.79 | 0.83 | 0.86 | 3.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21236 | 2740 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 7DEG | 30657 | 2024-03-15 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 6i52 | 4410 | 2024-03-10 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✘ | 7WD7 | 32433 | 2024-03-23 | 2021-12-21 | 3.5 | 3.71 | — | 3.6 | 0.002 | 0.60 | 0.0 | 0.04 | 8.23 | 0.00 | 2.158 | 7.78 | 0.03 | 4.5 | 95.4 | 0.1 | -1.98 | 0.62 | 0.55 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35322 | 4530 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7E0i | 30933 | 2024-03-11 | 2021-01-28 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8033 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✘ | 7SBF | 24978 | 2024-03-11 | 2021-09-24 | 2.9 | 3.28 | — | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 12.82 | 0.00 | 2.200 | 7.87 | 0.23 | 3.8 | 96.1 | 0.1 | -0.02 | 0.75 | 0.82 | 3.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8525 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 7DR2 | 30823 | 2024-03-18 | 2020-12-25 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89952 | 8588 | 76 | 0 | 438 | 0 | 0 | logfile |