Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SYJ	25530	2023-07-13	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	15.07	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.68	0.0	0.04	16.13	0.00	1.961	18.87	0.02	8.2	91.8	0.0	-1.69	1.32	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7YR6	34047	2023-07-03	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	20.67	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.006	0.85	0.0	0.05	21.69	0.01	2.063	46.62	0.00	26.4	73.6	0.0	-5.22	0.82	0.83	0.81	—	4248	220	5	118	0	0	0	logfile
✔	7CTF	30463	2023-07-07	2020-08-18	4.8	4.92	—	4.8	0.009	1.36	0.0	0.06	18.70	0.01	2.264	6.48	8.84	6.9	93.1	0.1	-4.50	0.77	0.73	—	4.7	0.004	0.82	0.0	0.04	14.56	0.00	2.064	19.33	0.06	7.3	92.7	0.0	-1.22	3.96	0.79	0.79	—	14504	1775	7	0	2	0	0	logfile
✔	3JAU	6366	2023-07-06	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✘	6JH6	9825	2023-07-04	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.11	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile
✘	5TAT	8384	2023-07-08	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.77	0.01	1.373	4.75	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✔	7SYM	25533	2023-07-13	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	15.76	0.01	2.245	5.29	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.005	0.73	0.0	0.04	16.44	0.01	1.990	16.98	0.00	8.9	91.1	0.0	-1.62	0.52	0.64	0.70	—	78761	4891	38	1859	2	0	0	logfile
✔	6W4o	21535	2023-07-13	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.78	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.75	0.0	0.05	13.01	0.00	2.134	21.61	0.00	2.4	97.4	0.2	0.49	1.35	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	7A96	11686	2023-07-14	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	6YRG	10889	2023-07-10	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.74	0.0	0.04	13.07	0.00	2.157	15.69	0.00	9.7	90.2	0.1	-1.41	3.45	0.74	0.50	—	21992	2736	4	0	0	0	0	logfile
✔	5VCA	8659	2023-07-08	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.004	0.74	0.0	0.04	6.04	0.00	2.096	8.58	0.00	15.1	84.8	0.1	-2.22	2.93	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	7Mo7	23919	2023-07-09	2021-05-01	4.8	4.76	—	4.3	0.004	0.75	0.0	0.05	14.05	0.00	2.126	19.13	0.00	5.2	94.8	0.0	-1.19	0.80	0.74	—	4.3	0.003	0.63	0.0	0.05	13.61	0.00	2.156	19.64	0.00	5.4	94.6	0.0	-1.24	0.53	0.82	0.78	—	18135	2329	5	0	6	0	0	logfile
✔	6R5K	4728	2023-07-13	2019-03-25	4.8	6.49	4.74	4.6	0.005	1.11	0.0	0.06	13.74	0.01	1.323	11.58	0.17	15.1	84.8	0.1	-4.78	0.88	0.78	—	4.6	0.003	0.72	0.0	0.04	14.27	0.00	2.062	25.47	0.00	13.3	86.7	0.0	-2.54	1.63	0.88	0.66	—	23508	2865	8	67	2	0	0	logfile
✔	6JC3	9793	2023-07-04	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.004	0.77	0.0	0.04	13.92	0.00	2.100	14.75	0.00	6.5	93.5	0.0	0.86	4.22	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	7ZNN	14812	2023-07-07	2022-04-21	4.8	7.93	6.02	4.7	0.003	0.80	0.0	0.04	14.16	0.00	2.316	6.53	0.93	7.2	92.6	0.2	-4.19	0.87	0.70	—	4.7	0.005	0.79	0.0	0.04	13.49	0.00	2.057	36.36	0.00	6.5	93.3	0.1	-1.84	2.05	0.87	0.60	—	14606	1814	4	0	1	0	0	logfile
✔	7F46	31444	2023-07-04	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.38	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.77	0.0	0.05	12.89	0.01	2.142	16.52	0.00	6.3	93.7	0.0	-2.00	1.56	0.79	0.62	—	6564	842	6	0	2	0	0	logfile
✔	6TD6	10464	2023-07-08	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	15.73	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.003	0.68	0.0	0.04	14.08	0.00	1.930	17.12	0.00	9.3	90.7	0.0	-1.32	1.43	0.59	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	7KS9	23016	2023-07-12	2020-11-21	4.75	5.64	4.96	4.9	0.005	0.80	0.0	0.05	11.85	0.01	2.222	3.57	0.07	1.9	98.1	0.0	-0.64	0.82	0.74	—	4.8	0.002	0.60	0.0	0.04	12.09	0.00	2.090	11.72	0.00	3.0	97.0	0.0	0.26	0.70	0.84	0.79	—	25380	3189	20	0	59	0	0	logfile
✔	6PVQ	20497	2023-07-08	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.003	0.81	0.0	0.04	13.47	0.00	2.171	14.10	0.00	11.8	88.0	0.2	-2.25	1.10	0.67	0.77	—	17640	2160	4	0	0	0	0	logfile
✔	7QGU	13959	2023-07-13	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.09	0.0	0.05	20.48	0.01	1.102	77.49	0.00	10.9	88.3	0.8	-1.78	2.90	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile

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