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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6D6V | 7821 | 2024-03-17 | 2018-04-22 | 4.8 | 5.14 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.41 | 0.01 | 1.189 | 25.63 | 0.97 | 15.8 | 83.5 | 0.7 | -4.28 | 0.84 | 0.74 | — | 4.6 | 0.003 | 0.77 | 0.0 | 0.05 | 20.74 | 0.00 | 2.099 | 25.57 | 0.00 | 14.3 | 85.7 | 0.0 | -2.18 | 1.56 | 0.86 | 0.78 | — | 17317 | 1535 | 9 | 178 | 158 | 0 | 0 | logfile |
✔ | 6MZJ | 9303 | 2024-03-15 | 2018-11-05 | 4.8 | 5.06 | — | 4.4 | 0.015 | 1.59 | 0.0 | 0.09 | 20.35 | 0.00 | 2.352 | 1.32 | 2.65 | 3.2 | 96.6 | 0.1 | -0.18 | 0.70 | 0.72 | — | 4.5 | 0.005 | 1.04 | 0.0 | 0.05 | 10.39 | 0.00 | 2.149 | 9.01 | 0.00 | 12.3 | 87.6 | 0.1 | -2.06 | 2.22 | 0.77 | 0.66 | — | 12653 | 2088 | 52 | 0 | 149 | 0 | 0 | logfile |
✔ | 6QD2 | 4517 | 2024-03-18 | 2018-12-31 | 4.8 | 4.92 | 5.85 | 4.9 | 0.006 | 0.86 | 0.0 | 0.04 | 9.04 | 0.01 | 2.025 | 6.53 | 0.00 | 11.6 | 88.4 | 0.0 | -4.60 | 0.35 | 0.62 | — | 4.9 | 0.004 | 0.70 | 0.0 | 0.04 | 10.80 | 0.01 | 2.038 | 14.21 | 0.00 | 10.0 | 90.0 | 0.0 | -2.07 | 1.11 | 0.39 | 0.66 | — | 21746 | 1420 | 5 | 0 | 2 | 0 | 11100 | logfile |
✔ | 6Uo9 | 20823 | 2024-03-14 | 2019-10-14 | 4.8 | 5.30 | — | 4.9 | 0.006 | 1.38 | 1.0 | 0.07 | 14.25 | 0.01 | 2.227 | 6.41 | 1.07 | 8.0 | 92.0 | 0.0 | -3.80 | 0.81 | 0.80 | — | 4.9 | 0.004 | 0.78 | 0.0 | 0.04 | 13.12 | 0.00 | 2.033 | 14.98 | 0.00 | 7.5 | 92.5 | 0.0 | -0.25 | 1.06 | 0.81 | 0.82 | — | 9915 | 1365 | 9 | 0 | 14 | 0 | 0 | logfile |
✘ | 5UK1 | 8563 | 2024-03-22 | 2017-01-19 | 4.8 | 7.30 | — | 7.0 | 0.010 | 1.28 | 0.0 | 0.07 | 12.04 | 0.01 | 2.106 | 4.22 | 0.16 | 8.1 | 91.8 | 0.1 | -3.97 | 0.88 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33948 | 2196 | 21 | 0 | 33 | 0 | 16401 | logfile |
✔ | 3J03 | 5138 | 2024-03-11 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.31 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 5.6 | 0.003 | 0.78 | 0.0 | 0.04 | 13.62 | 0.00 | 2.191 | 20.58 | 0.00 | 2.9 | 97.1 | 0.0 | -0.06 | 2.41 | 0.84 | 0.70 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YR6 | 34047 | 2024-03-10 | 2022-08-09 | 4.8 | 5.13 | 4.65 | 4.7 | 0.004 | 0.88 | 0.0 | 0.05 | 26.03 | 0.00 | 2.291 | 7.11 | 3.30 | 15.1 | 84.9 | 0.0 | -5.39 | 0.81 | 0.74 | — | 4.7 | 0.005 | 0.81 | 0.0 | 0.04 | 26.20 | 0.00 | 2.103 | 42.38 | 0.00 | 26.4 | 73.6 | 0.0 | -4.97 | 0.78 | 0.83 | 0.81 | — | 4248 | 220 | 5 | 118 | 0 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2024-03-11 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.012 | 2.01 | 0.0 | 0.08 | 11.31 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.007 | 1.19 | 0.0 | 0.05 | 10.55 | 0.01 | 2.168 | 17.65 | 0.00 | 23.0 | 76.9 | 0.1 | -4.03 | 1.19 | 0.82 | 0.76 | — | 7307 | 1393 | 16 | 0 | 23 | 0 | 0 | logfile |
✘ | 8HL3 | 34868 | 2024-03-10 | 2022-11-28 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 6XMG | 22258 | 2024-03-11 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 21.64 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 23.00 | 0.01 | 2.001 | 44.44 | 0.20 | 11.0 | 89.0 | 0.0 | -2.23 | 0.82 | 0.91 | 0.77 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 6Y9Z | 10742 | 2024-03-17 | 2020-03-10 | 4.8 | 5.22 | 4.55 | 6.0 | 0.012 | 1.07 | 3.0 | 0.11 | 13.05 | 0.01 | 1.631 | 10.65 | 0.45 | 1.9 | 98.0 | 0.0 | -0.96 | 0.71 | 0.75 | — | 4.9 | 0.003 | 0.80 | 0.0 | 0.05 | 13.10 | 0.01 | 2.073 | 19.30 | 0.05 | 3.6 | 96.4 | 0.0 | -0.31 | 3.64 | 0.74 | 0.81 | — | 18418 | 2364 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NAV | 12249 | 2024-03-26 | 2021-01-25 | 4.8 | 5.56 | 5.08 | 3.1 | 0.009 | 1.02 | 8.0 | 0.06 | 24.38 | 0.02 | 1.065 | 43.40 | 0.00 | 7.0 | 93.0 | 0.0 | -2.28 | 0.89 | 0.80 | — | 2.9 | 0.004 | 0.72 | 0.0 | 0.04 | 23.66 | 0.01 | 1.859 | 40.28 | 0.00 | 6.1 | 93.9 | 0.0 | -1.31 | 0.82 | 0.91 | 0.86 | — | 52843 | 2595 | 24 | 1510 | 38 | 0 | 0 | logfile |
✔ | 5LZC | 4123 | 2024-03-01 | 2016-09-29 | 4.8 | 5.11 | 5.25 | 4.8 | 0.009 | 1.21 | 10.0 | 0.08 | 22.13 | 0.02 | 1.994 | 5.27 | 0.11 | 5.7 | 92.4 | 1.8 | -1.87 | 0.82 | 0.82 | — | 4.8 | 0.004 | 0.74 | 0.0 | 0.04 | 23.06 | 0.01 | 1.922 | 29.21 | 0.02 | 8.3 | 91.4 | 0.3 | -2.11 | 1.86 | 0.83 | 0.83 | — | 152981 | 6432 | 64 | 4785 | 5 | 2 | 0 | logfile |
✔ | 6JC3 | 9793 | 2024-03-11 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 16.29 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.002 | 0.66 | 0.0 | 0.04 | 14.49 | 0.00 | 2.142 | 11.86 | 0.00 | 5.4 | 94.6 | 0.0 | 1.32 | 4.20 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 8FoJ | 29351 | 2024-03-17 | 2022-12-30 | 4.8 | 3.41 | 4.43 | 3.3 | 0.009 | 0.90 | 1.0 | 0.04 | 13.63 | 0.01 | 2.138 | 9.71 | 0.05 | 3.7 | 96.3 | 0.0 | 0.08 | 0.80 | 0.61 | — | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.07 | 0.00 | 2.124 | 11.47 | 0.11 | 3.5 | 96.5 | 0.0 | 0.41 | 1.30 | 0.82 | 0.65 | — | 17538 | 2151 | 7 | 21 | 1 | 0 | 0 | logfile |
✔ | 5G5L | 3439 | 2024-03-23 | 2016-05-26 | 4.8 | 5.08 | — | 4.8 | 0.010 | 1.38 | 14.0 | 0.09 | 16.60 | 0.01 | 0.675 | 31.05 | 7.76 | 6.0 | 92.2 | 1.8 | -2.38 | 0.81 | 0.71 | — | 4.8 | 0.004 | 0.74 | 0.0 | 0.04 | 13.39 | 0.00 | 2.050 | 18.55 | 0.00 | 4.1 | 95.9 | 0.1 | 0.41 | 3.23 | 0.86 | 0.83 | — | 37349 | 4686 | 20 | 0 | 7 | 0 | 0 | logfile |
✔ | 7JGJ | 22328 | 2024-03-16 | 2020-07-19 | 4.8 | 7.06 | — | 6.5 | 0.013 | 2.22 | 17.0 | 0.31 | 17.49 | 0.01 | 1.656 | 7.23 | 12.68 | 7.2 | 91.6 | 1.2 | -2.09 | 0.88 | 0.68 | — | 6.5 | 0.004 | 0.79 | 0.0 | 0.04 | 13.55 | 0.00 | 2.116 | 36.11 | 0.07 | 8.7 | 91.2 | 0.1 | -2.28 | 1.24 | 0.85 | 0.50 | — | 13324 | 1707 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q0A | 13742 | 2024-03-19 | 2021-10-14 | 4.8 | 5.34 | — | 4.9 | 0.003 | 0.58 | 0.0 | 0.05 | 11.43 | 0.00 | 2.216 | 4.45 | 0.34 | 3.9 | 96.1 | 0.1 | -0.52 | 0.78 | 0.63 | — | 4.8 | 0.003 | 0.63 | 0.0 | 0.04 | 11.50 | 0.00 | 2.103 | 15.45 | 0.04 | 3.4 | 96.5 | 0.1 | 0.11 | 0.90 | 0.83 | 0.75 | — | 25125 | 3193 | 19 | 0 | 49 | 0 | 0 | logfile |
✔ | 7ZNN | 14812 | 2024-03-16 | 2022-04-21 | 4.8 | 7.93 | 6.02 | 4.7 | 0.003 | 0.80 | 0.0 | 0.04 | 14.16 | 0.00 | 2.316 | 6.53 | 0.93 | 7.2 | 92.6 | 0.2 | -4.19 | 0.87 | 0.70 | — | 4.7 | 0.003 | 0.70 | 0.0 | 0.04 | 13.34 | 0.00 | 2.120 | 24.30 | 0.00 | 5.1 | 94.9 | 0.1 | -1.32 | 2.02 | 0.88 | 0.71 | — | 14606 | 1814 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JCo | 6574 | 2024-03-21 | 2016-01-06 | 4.8 | 5.76 | — | 4.7 | 0.012 | 1.35 | 4.0 | 0.06 | 10.71 | 0.01 | 1.268 | 95.78 | 0.41 | 13.5 | 85.0 | 1.5 | -5.20 | 0.87 | 0.76 | — | 4.7 | 0.004 | 0.83 | 0.0 | 0.05 | 12.35 | 0.01 | 1.948 | 34.99 | 0.00 | 8.2 | 91.4 | 0.4 | -1.72 | 3.09 | 0.90 | 0.84 | — | 104317 | 13329 | 47 | 0 | 0 | 0 | 0 | logfile |