Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E3o	27869	2023-08-13	2022-08-17	1.99	2.75	2.52	2.6	0.006	0.42	0.0	0.05	12.65	0.02	1.955	2.37	0.74	4.6	95.1	0.3	-2.75	0.70	0.88	5.93	2.5	0.005	0.61	0.0	0.04	13.84	0.01	1.944	4.19	1.49	5.5	94.3	0.2	0.06	1.00	0.69	0.88	5.88	115702	1179	11	3015	2	0	41809	logfile
✔	7EoS	31229	2023-08-18	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	8.87	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.003	0.68	0.0	0.04	12.42	0.00	2.139	12.94	0.34	6.1	93.9	0.1	-0.43	1.30	0.90	0.83	1.30	24600	3106	8	0	18	0	0	logfile
✔	7WU9	32824	2023-08-10	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.62	0.0	0.04	15.22	0.00	2.261	8.40	0.43	3.0	97.0	0.0	1.17	0.82	0.68	0.83	2.14	7369	1030	5	0	0	0	0	logfile
✔	8DK1	27480	2023-08-15	2022-07-01	2.95	3.68	3.03	3.4	0.002	0.42	0.0	0.04	9.97	0.00	2.294	2.83	1.44	3.3	96.7	0.0	2.11	0.85	0.90	2.51	3.4	0.002	0.51	0.0	0.04	12.85	0.00	2.260	3.98	1.49	3.6	96.4	0.0	2.59	0.62	0.85	0.90	2.22	19500	2446	8	0	0	0	0	logfile
✔	6QXF	4668	2023-08-23	2019-03-07	3.6	4.31	—	3.6	0.002	0.42	0.0	0.04	11.08	0.00	2.203	7.01	0.73	2.2	97.7	0.1	-1.19	0.90	0.86	1.38	3.6	0.003	0.63	0.0	0.04	14.05	0.00	2.106	11.03	0.10	2.3	97.6	0.1	1.79	2.77	0.89	0.86	1.53	34693	4088	30	50	8	0	0	logfile
✘	5GW4	9540	2023-08-12	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7oZN	13129	2023-08-10	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.69	0.0	0.05	16.69	0.00	2.069	15.15	0.51	3.5	96.5	0.0	-0.01	0.84	0.80	0.78	1.48	54330	6774	32	0	10	0	0	logfile
✔	8GS2	34218	2023-08-14	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.09	0.00	2.185	6.70	1.56	1.7	98.3	0.0	1.43	1.32	0.74	0.90	4.14	16935	1916	7	64	4	0	0	logfile
✔	7PXA	13695	2023-08-26	2021-10-08	2.8	2.56	—	2.8	0.002	0.42	0.0	0.04	9.39	0.00	2.147	3.67	1.14	1.5	98.5	0.0	2.60	0.76	0.84	2.86	2.8	0.003	0.58	0.0	0.04	15.33	0.00	2.086	5.80	2.47	2.1	97.9	0.0	2.29	1.46	0.77	0.87	2.75	46614	6187	35	0	0	0	0	logfile
✔	7EBF	31053	2023-08-13	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.003	0.52	0.0	0.04	15.90	0.00	2.270	8.68	2.56	2.9	97.1	0.0	1.11	0.55	0.67	0.81	2.90	13052	1640	4	0	0	0	0	logfile
✔	6VX4	21429	2023-08-11	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.004	0.80	0.0	0.05	15.92	0.00	2.105	22.34	0.38	6.3	93.7	0.0	-1.35	1.49	0.84	0.83	2.39	9813	1265	9	0	0	0	0	logfile
✔	6PCT	20307	2023-08-17	2019-06-18	2.8	3.01	—	2.9	0.006	0.43	2.0	0.03	12.76	0.03	1.891	2.96	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.005	0.70	0.0	0.04	14.72	0.01	2.058	8.14	3.81	6.8	93.1	0.1	-1.02	0.41	0.68	0.88	4.35	72198	964	8	3015	1	0	0	logfile
✔	8FZ6	29604	2023-08-27	2023-01-27	2.54	2.71	2.58	2.7	0.002	0.43	0.0	0.04	15.52	0.00	2.199	5.23	1.26	1.4	98.6	0.0	1.88	0.80	0.90	3.97	2.7	0.005	0.59	0.0	0.05	17.17	0.00	2.144	7.03	2.44	1.8	98.2	0.0	1.54	0.94	0.80	0.91	3.82	49780	6404	30	0	0	0	0	logfile
✔	6XGC	22180	2023-08-14	2020-06-17	4.1	4.25	—	4.2	0.002	0.43	0.0	0.04	7.79	0.00	2.215	5.83	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.21	0.00	2.197	11.45	0.05	3.6	96.4	0.0	0.02	1.31	0.82	0.83	—	17040	2157	21	0	21	0	0	logfile
✔	7Y5G	33619	2023-08-09	2022-06-17	3.85	4.19	3.81	4.2	0.002	0.43	0.0	0.04	12.74	0.00	2.084	2.19	0.00	0.7	99.3	0.0	-0.05	0.63	0.72	1.21	4.1	0.002	0.53	0.0	0.04	15.35	0.00	2.030	5.10	0.38	1.0	99.0	0.0	1.53	0.65	0.65	0.75	0.28	4736	604	4	0	6	0	0	logfile
✔	7SJ4	25153	2023-08-09	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.60	0.0	0.04	14.86	0.00	2.263	6.56	1.86	1.9	98.1	0.0	1.57	3.30	0.59	0.71	2.52	3909	481	4	0	0	24	0	logfile
✔	8iP5	35632	2023-08-12	2023-03-14	2.5	3.18	2.56	3.0	0.002	0.43	0.0	0.04	12.76	0.00	2.236	6.28	0.00	1.6	98.4	0.0	3.88	0.74	0.84	3.08	3.0	0.002	0.49	0.0	0.04	15.44	0.00	2.247	6.28	0.35	1.6	98.4	0.0	3.63	0.56	0.72	0.84	3.08	12928	1600	12	0	3	5	0	logfile
✔	6HD7	0202	2023-08-24	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	24.96	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.78	0.0	0.04	17.87	0.00	2.034	18.45	0.79	7.7	91.9	0.4	-1.42	1.57	0.76	0.88	1.83	141153	7514	52	3767	234	0	0	logfile
✔	7XM1	33289	2023-08-11	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	3.9	0.003	0.56	0.0	0.04	18.87	0.00	2.214	4.30	0.31	3.3	96.7	0.0	2.60	0.65	0.74	0.83	1.49	60240	7380	101	0	60	0	0	logfile
✔	8iP6	35633	2023-08-12	2023-03-14	2.9	3.45	3.01	3.2	0.003	0.43	0.0	0.04	13.00	0.00	2.309	2.50	0.00	2.4	97.6	0.0	4.51	0.80	0.85	2.74	3.2	0.004	0.61	0.0	0.04	15.74	0.00	2.175	5.43	0.77	3.1	96.9	0.0	4.00	0.61	0.76	0.83	2.44	12921	1600	6	0	1	0	0	logfile

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