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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WK7 | 32561 | 2023-12-09 | 2022-01-08 | 3.49 | 2.78 | — | 3.0 | 0.002 | 0.44 | 0.0 | 0.04 | 8.68 | 0.00 | 2.206 | 5.49 | 3.12 | 4.5 | 95.4 | 0.1 | -3.90 | 0.77 | 0.76 | 2.02 | 3.1 | 0.004 | 0.78 | 0.0 | 0.05 | 14.91 | 0.00 | 2.207 | 15.16 | 0.98 | 6.4 | 93.5 | 0.1 | -1.05 | 0.77 | 0.79 | 0.80 | 2.02 | 10206 | 1330 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XoL | 33351 | 2023-12-07 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.73 | 0.00 | 2.100 | 12.34 | 0.11 | 1.1 | 98.9 | 0.0 | 2.20 | 0.25 | 0.90 | 0.90 | 1.60 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oDR | 12845 | 2023-12-07 | 2021-04-30 | 2.9 | 3.11 | — | 3.0 | 0.002 | 0.41 | 0.0 | 0.03 | 15.66 | 0.02 | 1.963 | 4.98 | 0.44 | 1.1 | 98.9 | 0.0 | 0.96 | 0.74 | 0.80 | 3.31 | 3.0 | 0.003 | 0.71 | 0.0 | 0.04 | 18.42 | 0.01 | 1.897 | 10.20 | 2.33 | 2.1 | 97.9 | 0.0 | 0.79 | 1.26 | 0.77 | 0.84 | 2.73 | 107464 | 9244 | 68 | 1489 | 135 | 0 | 0 | logfile |
✔ | 7UGJ | 26489 | 2023-12-07 | 2022-03-24 | 2.81 | 3.45 | 2.86 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 10.72 | 0.00 | 2.285 | 3.79 | 0.00 | 0.7 | 99.3 | 0.0 | 2.01 | 0.54 | 0.89 | 3.90 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 13.32 | 0.00 | 2.230 | 5.69 | 1.90 | 1.0 | 99.0 | 0.0 | 2.86 | 0.54 | 0.51 | 0.86 | 1.74 | 3095 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 7R9K | 24328 | 2023-12-08 | 2021-06-29 | 4.1 | 4.93 | — | 4.0 | 0.002 | 0.35 | 0.0 | 0.04 | 4.65 | 0.00 | 2.223 | 3.24 | 0.00 | 10.3 | 89.1 | 0.6 | -4.05 | 0.83 | 0.71 | — | 4.1 | 0.003 | 0.57 | 0.0 | 0.04 | 8.26 | 0.00 | 1.855 | 10.49 | 0.00 | 5.4 | 94.6 | 0.0 | -0.16 | 1.78 | 0.89 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 7R1Y | 14243 | 2023-12-07 | 2022-02-03 | 3.0 | 3.01 | 2.95 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 13.13 | 0.00 | 2.252 | 6.47 | 3.44 | 2.9 | 97.1 | 0.0 | 0.36 | 0.72 | 0.71 | 2.29 | 3.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.45 | 0.00 | 2.104 | 13.37 | 3.13 | 4.0 | 96.0 | 0.0 | 0.97 | 1.13 | 0.74 | 0.74 | 2.05 | 5704 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UGX | 26498 | 2023-12-08 | 2022-03-25 | 2.96 | 3.60 | 2.95 | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 10.61 | 0.00 | 2.234 | 3.61 | 0.00 | 1.5 | 98.5 | 0.0 | 1.81 | 0.48 | 0.83 | 2.71 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 13.34 | 0.00 | 2.184 | 6.27 | 0.62 | 2.2 | 97.8 | 0.0 | 2.70 | 0.98 | 0.49 | 0.88 | 1.91 | 3108 | 416 | 1 | 0 | 3 | 0 | 0 | logfile |
✔ | 8A00 | 15043 | 2023-12-07 | 2022-05-26 | 2.6 | 2.71 | 2.57 | 2.7 | 0.002 | 0.58 | 0.0 | 0.05 | 14.42 | 0.00 | 2.321 | 2.79 | 0.00 | 6.5 | 93.5 | 0.0 | -3.74 | 0.39 | 0.89 | 5.54 | 2.7 | 0.004 | 0.65 | 0.0 | 0.05 | 17.71 | 0.00 | 2.255 | 5.74 | 1.41 | 7.5 | 91.8 | 0.7 | -3.73 | 1.03 | 0.40 | 0.91 | 5.60 | 3315 | 408 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HNV | 34919 | 2023-12-08 | 2022-12-08 | 3.1 | 2.71 | 3.05 | 2.9 | 0.002 | 0.57 | 0.0 | 0.04 | 20.13 | 0.00 | 2.103 | 11.63 | 0.00 | 4.3 | 95.7 | 0.0 | -0.35 | 0.57 | 0.66 | 1.19 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 21.15 | 0.00 | 2.157 | 11.92 | 0.15 | 6.0 | 94.0 | 0.0 | -0.23 | 1.53 | 0.59 | 0.71 | 0.95 | 9196 | 832 | 5 | 128 | 0 | 0 | 0 | logfile |
✔ | 7RQS | 24635 | 2023-12-08 | 2021-08-07 | 3.57 | 2.31 | 3.59 | 2.0 | 0.002 | 0.54 | 0.0 | 0.04 | 13.38 | 0.00 | 2.088 | 9.87 | 0.26 | 7.6 | 92.4 | 0.0 | -0.91 | 0.70 | 0.68 | 2.53 | 2.0 | 0.003 | 0.64 | 0.0 | 0.04 | 15.66 | 0.00 | 1.984 | 11.67 | 0.26 | 8.9 | 91.0 | 0.1 | -1.05 | 0.58 | 0.71 | 0.69 | 2.23 | 7792 | 1074 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7V4A | 31705 | 2023-12-07 | 2021-08-12 | 3.2 | 3.19 | — | 3.3 | 0.002 | 0.52 | 0.0 | 0.05 | 14.28 | 0.00 | 2.423 | 8.54 | 0.00 | 7.9 | 92.1 | 0.0 | -5.80 | 0.42 | 0.82 | 3.23 | 3.2 | 0.003 | 0.60 | 0.0 | 0.05 | 16.38 | 0.00 | 2.347 | 6.77 | 0.61 | 11.8 | 88.2 | 0.0 | -3.97 | 1.70 | 0.42 | 0.81 | 3.13 | 1653 | 240 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A7o | 15222 | 2023-12-07 | 2022-06-21 | 3.0 | 3.15 | 2.97 | 3.0 | 0.002 | 0.55 | 0.0 | 0.04 | 11.28 | 0.00 | 2.418 | 6.71 | 0.00 | 2.9 | 97.1 | 0.0 | -3.59 | 0.50 | 0.88 | 5.55 | 3.0 | 0.005 | 0.67 | 0.0 | 0.05 | 14.82 | 0.00 | 2.251 | 5.54 | 0.60 | 7.9 | 92.1 | 0.0 | -3.62 | 4.59 | 0.46 | 0.90 | 5.21 | 4362 | 528 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EoJ | 28377 | 2023-12-08 | 2022-10-03 | 3.07 | 3.47 | 3.19 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 11.26 | 0.00 | 2.216 | 7.60 | 3.76 | 4.1 | 95.9 | 0.0 | -1.48 | 0.69 | 0.60 | 0.95 | 3.2 | 0.003 | 0.69 | 0.0 | 0.04 | 14.72 | 0.00 | 2.099 | 17.14 | 1.02 | 4.6 | 95.4 | 0.0 | -0.35 | 1.74 | 0.70 | 0.61 | 0.95 | 9327 | 1219 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BFA | 16018 | 2023-12-07 | 2022-10-24 | 3.0 | 3.05 | 3.02 | 3.3 | 0.002 | 0.39 | 0.0 | 0.05 | 13.94 | 0.00 | 2.592 | 6.46 | 0.00 | 0.0 | 100.0 | 0.0 | -3.13 | 0.47 | 0.82 | 5.29 | 3.3 | 0.006 | 0.62 | 0.0 | 0.05 | 17.14 | 0.00 | 2.103 | 7.90 | 1.43 | 3.3 | 96.7 | 0.0 | -2.68 | 1.99 | 0.53 | 0.89 | 6.48 | 2860 | 380 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EHS | 28151 | 2023-12-08 | 2022-09-14 | 3.3 | 2.87 | 3.21 | 3.3 | 0.002 | 0.47 | 0.0 | 0.04 | 14.12 | 0.00 | 2.082 | 3.04 | 0.00 | 1.3 | 98.7 | 0.0 | 1.50 | 0.54 | 0.80 | 3.22 | 3.3 | 0.005 | 0.61 | 0.0 | 0.05 | 15.60 | 0.00 | 2.218 | 5.87 | 0.56 | 1.7 | 98.3 | 0.0 | 0.52 | 0.50 | 0.55 | 0.83 | 2.87 | 7546 | 1015 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QSN | 18637 | 2023-12-07 | 2023-10-10 | 3.54 | 4.23 | 3.52 | 4.0 | 0.002 | 0.48 | 0.0 | 0.03 | 10.37 | 0.00 | 2.269 | 4.15 | 3.75 | 3.5 | 96.5 | 0.0 | 2.22 | 0.55 | 0.76 | 0.70 | 4.0 | 0.004 | 0.89 | 0.0 | 0.04 | 15.29 | 0.00 | 2.233 | 13.82 | 0.27 | 3.7 | 96.3 | 0.0 | 1.68 | 1.84 | 0.56 | 0.77 | 1.37 | 3579 | 464 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CUJ | 27001 | 2023-12-07 | 2022-05-17 | 3.04 | 2.55 | 3.04 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 14.73 | 0.00 | 2.276 | 5.90 | 0.00 | 2.1 | 97.9 | 0.0 | 1.48 | 0.44 | 0.80 | 0.86 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 15.45 | 0.00 | 2.240 | 6.34 | 0.00 | 2.1 | 97.9 | 0.0 | 1.66 | 0.90 | 0.44 | 0.80 | 1.24 | 3293 | 433 | 1 | 0 | 0 | 1 | 0 | logfile |
✔ | 8AUR | 15673 | 2023-12-07 | 2022-08-25 | 3.47 | 3.44 | 3.63 | 3.6 | 0.002 | 0.54 | 0.0 | 0.04 | 13.41 | 0.00 | 2.350 | 6.62 | 0.00 | 5.6 | 94.4 | 0.0 | -1.30 | 0.72 | 0.82 | 2.41 | 3.5 | 0.004 | 0.66 | 0.0 | 0.04 | 16.10 | 0.00 | 2.233 | 7.09 | 0.00 | 9.4 | 90.5 | 0.1 | -1.38 | 1.66 | 0.71 | 0.83 | 2.56 | 5409 | 699 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Cio | 16683 | 2023-12-07 | 2023-02-10 | 3.5 | 3.28 | 3.48 | 3.8 | 0.002 | 0.55 | 0.0 | 0.05 | 11.52 | 0.00 | 2.418 | 8.03 | 0.00 | 8.9 | 91.1 | 0.0 | -1.60 | 0.73 | 0.83 | 2.66 | 3.8 | 0.004 | 0.75 | 0.0 | 0.05 | 13.91 | 0.00 | 2.178 | 9.10 | 0.48 | 11.5 | 87.9 | 0.6 | -1.97 | 0.51 | 0.73 | 0.84 | 2.55 | 5655 | 795 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D7E | 27228 | 2023-12-10 | 2022-06-07 | 2.93 | 3.17 | 2.98 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 11.95 | 0.00 | 2.257 | 5.40 | 0.70 | 2.9 | 97.1 | 0.0 | -2.25 | 0.67 | 0.81 | 3.32 | 3.1 | 0.005 | 0.68 | 0.0 | 0.05 | 15.94 | 0.00 | 2.231 | 5.92 | 4.90 | 4.6 | 95.4 | 0.0 | -0.24 | 1.59 | 0.67 | 0.86 | 3.60 | 8959 | 1143 | 9 | 0 | 8 | 0 | 0 | logfile |