Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EFD	28080	2023-07-04	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.61	0.0	0.04	15.94	0.00	2.165	13.04	0.26	4.5	95.5	0.0	0.71	0.55	0.88	0.80	0.54	7107	886	2	0	0	0	0	logfile
✔	5MBV	3460	2023-07-11	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.004	0.71	0.0	0.04	13.50	0.00	2.114	12.19	0.23	3.9	96.0	0.0	1.12	0.89	0.88	0.83	1.41	24118	3014	5	0	0	0	0	logfile
✔	7R8C	24315	2023-07-04	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.002	0.66	0.0	0.04	14.79	0.00	2.156	8.76	0.21	5.1	94.9	0.0	1.17	1.05	0.71	0.87	1.83	8538	1090	2	0	0	0	0	logfile
✔	7CYN	30501	2023-07-10	2020-09-03	4.2	5.28	—	4.4	0.002	0.52	0.0	0.04	12.56	0.00	2.204	9.21	0.09	5.6	94.4	0.1	-2.47	0.67	0.65	—	4.4	0.003	0.73	0.0	0.04	12.81	0.00	2.107	19.70	0.00	5.7	94.3	0.0	-0.47	1.48	0.73	0.81	—	20432	2538	8	0	6	0	0	logfile
✔	7Y5B	33615	2023-07-16	2022-06-16	4.4	4.11	4.45	4.0	0.002	0.56	0.0	0.04	14.57	0.00	1.888	7.15	0.00	2.7	97.3	0.0	1.29	0.79	0.81	—	4.0	0.003	0.57	0.0	0.04	14.63	0.00	1.900	8.03	0.00	3.0	97.0	0.0	1.33	0.25	0.79	0.81	—	35959	4838	26	0	22	0	0	logfile
✔	7R89	24312	2023-07-05	2021-06-26	2.6	2.92	—	2.9	0.002	0.56	0.0	0.04	14.72	0.00	2.221	7.92	3.39	3.8	96.2	0.0	-1.46	0.71	0.86	3.40	2.8	0.004	0.63	0.0	0.04	16.23	0.00	2.165	5.94	2.95	5.0	95.0	0.0	0.76	1.29	0.72	0.90	3.70	10531	1332	5	0	1	0	0	logfile
✔	6F44	4183	2023-07-19	2017-11-29	4.2	4.49	—	4.2	0.002	0.61	0.0	0.04	14.49	0.01	1.297	7.46	0.85	9.5	90.5	0.0	-4.81	0.87	0.76	—	4.2	0.003	0.74	0.0	0.04	14.90	0.00	1.978	15.00	0.00	8.5	91.5	0.0	-2.13	0.74	0.89	0.81	—	45251	5463	28	88	7	0	0	logfile
✔	7V27	31638	2023-07-03	2021-08-07	4.18	4.43	—	4.2	0.002	0.54	0.0	0.04	11.66	0.00	2.229	9.54	0.00	9.2	90.8	0.0	-4.40	0.85	0.80	—	4.2	0.004	0.76	0.0	0.05	12.07	0.01	2.188	19.72	0.28	11.6	88.4	0.0	-2.83	0.81	0.86	0.82	—	3252	421	4	0	1	0	0	logfile
✔	7Uo1	26637	2023-07-08	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	27.22	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.005	1.86	0.0	0.24	27.85	0.01	1.728	26.76	1.02	7.3	92.7	0.0	-0.76	1.82	0.58	0.66	2.01	16588	112	4	455	10	0	5894	logfile
✔	7R9E	24324	2023-07-04	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.56	0.0	0.04	9.08	0.00	2.177	7.90	0.00	5.0	95.0	0.0	0.09	1.76	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	8EG0	28108	2023-07-04	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	11.73	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.004	0.55	0.0	0.04	13.47	0.00	2.195	11.32	0.00	2.3	97.7	0.0	1.60	0.57	0.90	0.85	1.98	6031	584	4	65	0	0	0	logfile
✔	6UUS	20901	2023-07-05	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	7WD7	32433	2023-07-16	2021-12-21	3.5	3.71	—	3.6	0.002	0.60	0.0	0.04	8.23	0.00	2.158	7.78	0.03	4.5	95.4	0.1	-1.98	0.62	0.55	0.91	3.6	0.003	0.66	0.0	0.04	13.84	0.00	2.048	10.80	0.23	4.0	96.0	0.0	-0.24	3.46	0.68	0.69	1.16	35322	4530	9	0	0	0	0	logfile
✔	7P5Y	13208	2023-07-18	2021-07-15	3.29	2.97	3.19	3.1	0.002	0.49	0.0	0.04	11.33	0.00	2.158	10.43	2.64	3.5	96.5	0.0	-0.32	0.72	0.72	1.77	3.1	0.003	0.58	0.0	0.04	14.05	0.00	2.117	13.06	0.13	5.3	94.7	0.0	-0.60	0.53	0.75	0.77	1.48	41106	5028	12	0	0	0	0	logfile
✔	6YV1	10940	2023-07-03	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	3.7	0.003	0.65	0.0	0.04	13.97	0.00	2.248	6.45	0.00	2.2	97.8	0.0	1.32	0.60	0.50	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	7F6D	31478	2023-07-13	2021-06-25	3.85	4.03	—	3.9	0.002	0.59	0.0	0.04	13.43	0.00	2.214	9.10	0.03	6.7	93.3	0.0	-0.98	0.79	0.77	1.28	3.9	0.003	0.67	0.0	0.04	15.24	0.00	2.187	11.12	0.23	7.9	92.1	0.1	-1.09	1.48	0.80	0.78	1.11	28930	3790	8	0	0	0	0	logfile
✔	7E7Z	31005	2023-07-04	2021-02-28	3.2	3.35	2.96	3.4	0.002	0.51	0.0	0.04	13.40	0.00	2.240	9.87	0.00	5.6	94.4	0.0	-0.12	0.63	0.81	1.86	3.3	0.003	0.53	0.0	0.04	15.19	0.00	2.235	8.66	0.47	5.4	94.6	0.0	1.58	0.42	0.55	0.80	1.80	7808	992	4	0	0	0	0	logfile
✔	7R9K	24328	2023-07-04	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.004	0.59	0.0	0.04	8.20	0.00	1.791	11.91	0.00	6.4	93.6	0.0	-0.32	1.79	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7U5i	26351	2023-07-11	2022-03-02	3.26	3.14	3.37	3.2	0.002	0.56	0.0	0.04	11.62	0.00	2.219	7.74	2.82	0.8	99.2	0.0	0.87	0.63	0.75	1.83	3.2	0.003	0.72	0.0	0.05	16.39	0.00	2.159	15.05	0.16	2.1	97.9	0.0	-0.02	0.67	0.67	0.78	1.94	23539	2904	16	0	0	123	0	logfile
✔	7R8D	24316	2023-07-04	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.46	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.4	0.004	0.62	0.0	0.04	15.91	0.00	2.226	7.01	0.32	5.2	94.8	0.0	0.41	0.92	0.63	0.87	2.20	8762	1090	4	0	8	0	0	logfile

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