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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7WV4 | 32845 | 2024-03-19 | 2022-02-09 | 3.35 | 3.68 | — | 3.6 | 0.014 | 1.48 | 0.0 | 0.04 | 20.41 | 0.08 | 2.227 | 7.60 | 0.00 | 4.6 | 95.4 | 0.0 | -1.40 | 0.79 | 0.76 | 2.07 | 3.4 | 0.004 | 1.74 | 0.0 | 0.04 | 21.15 | 0.02 | 2.145 | 16.40 | 2.00 | 6.7 | 93.3 | 0.0 | -2.05 | 0.93 | 0.81 | 0.81 | 2.23 | 24490 | 2636 | 6 | 80 | 80 | 0 | 0 | logfile |
✔ | 6QDW | 4531 | 2024-03-18 | 2019-01-03 | 2.83 | 2.94 | 2.82 | 2.9 | 0.013 | 1.10 | 0.0 | 0.06 | 24.58 | 0.01 | 1.901 | 6.27 | 1.25 | 7.1 | 92.7 | 0.2 | -4.19 | 0.71 | 0.83 | 2.54 | 2.9 | 0.004 | 0.63 | 0.0 | 0.04 | 24.24 | 0.00 | 2.053 | 10.24 | 3.91 | 5.5 | 94.5 | 0.0 | -1.14 | 1.27 | 0.77 | 0.89 | 3.24 | 90690 | 3127 | 32 | 3081 | 0 | 0 | 0 | logfile |
✔ | 7UNU | 26633 | 2024-03-25 | 2022-04-11 | 2.9 | 3.16 | 2.89 | 3.1 | 0.007 | 0.70 | 0.0 | 0.04 | 22.66 | 0.02 | 1.895 | 6.14 | 0.20 | 8.0 | 91.6 | 0.4 | -1.70 | 0.81 | 0.89 | 3.42 | 3.1 | 0.005 | 0.72 | 4.0 | 0.04 | 22.80 | 0.01 | 1.751 | 7.38 | 3.00 | 6.4 | 93.2 | 0.4 | -0.94 | 2.56 | 0.79 | 0.89 | 2.71 | 149259 | 6488 | 86 | 4606 | 609 | 201 | 0 | logfile |
✔ | 7WS2 | 32741 | 2024-03-10 | 2022-01-28 | 3.3 | 3.22 | — | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 13.31 | 0.01 | 2.258 | 7.21 | 0.00 | 3.5 | 96.5 | 0.0 | -1.86 | 0.68 | 0.78 | 3.08 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 15.39 | 0.00 | 2.118 | 10.43 | 4.95 | 6.6 | 93.4 | 0.0 | -1.77 | 0.46 | 0.70 | 0.82 | 3.49 | 3343 | 431 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W1N | 21513 | 2024-03-10 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.18 | 0.00 | 2.112 | 12.42 | 2.20 | 3.1 | 96.9 | 0.0 | 0.78 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 6WC9 | 21603 | 2024-03-15 | 2020-03-30 | 2.64 | 2.43 | — | 2.6 | 0.006 | 0.54 | 0.0 | 0.04 | 15.75 | 0.00 | 1.949 | 3.96 | 2.10 | 3.9 | 96.1 | 0.0 | -0.42 | 0.53 | 0.77 | 3.24 | 2.6 | 0.003 | 0.52 | 0.0 | 0.04 | 17.20 | 0.00 | 1.905 | 3.88 | 2.75 | 1.7 | 98.3 | 0.0 | 3.07 | 0.73 | 0.64 | 0.82 | 3.41 | 11713 | 734 | 6 | 0 | 7 | 106 | 5904 | logfile |
✔ | 6ZiT | 11229 | 2024-03-18 | 2020-06-26 | 3.49 | 3.68 | 4.20 | 3.5 | 0.005 | 0.74 | 0.0 | 0.04 | 15.19 | 0.01 | 1.968 | 23.60 | 0.00 | 10.6 | 89.4 | 0.0 | -1.92 | 0.49 | 0.72 | 0.69 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 16.52 | 0.00 | 1.971 | 14.12 | 1.29 | 5.3 | 94.7 | 0.0 | 0.36 | 0.52 | 0.49 | 0.73 | 0.49 | 20646 | 1300 | 15 | 0 | 0 | 0 | 10446 | logfile |
✔ | 8A8U | 15240 | 2024-03-20 | 2022-06-24 | 3.62 | 3.92 | 3.73 | 3.8 | 0.004 | 0.83 | 0.0 | 0.05 | 15.49 | 0.01 | 2.196 | 8.04 | 0.04 | 3.4 | 96.6 | 0.0 | -0.39 | 0.78 | 0.76 | 1.16 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 16.83 | 0.00 | 2.103 | 13.60 | 1.90 | 3.3 | 96.7 | 0.0 | 0.86 | 0.99 | 0.79 | 0.78 | 0.87 | 27129 | 3391 | 13 | 0 | 33 | 0 | 0 | logfile |
✔ | 6S91 | 10126 | 2024-03-12 | 2019-07-11 | 2.68 | 3.17 | 2.85 | 3.0 | 0.006 | 0.80 | 0.0 | 0.05 | 15.52 | 0.00 | 1.696 | 20.08 | 0.09 | 13.5 | 86.3 | 0.2 | -4.91 | 0.69 | 0.74 | 2.17 | 3.1 | 0.004 | 0.79 | 0.0 | 0.05 | 17.49 | 0.00 | 2.006 | 17.58 | 3.55 | 10.7 | 89.2 | 0.0 | -2.78 | 0.66 | 0.66 | 0.81 | 1.87 | 62045 | 7488 | 36 | 84 | 6 | 0 | 0 | logfile |
✔ | 6PC8 | 20299 | 2024-03-16 | 2019-06-16 | 2.9 | 3.26 | — | 3.1 | 0.006 | 0.50 | 0.0 | 0.03 | 23.73 | 0.02 | 1.931 | 3.25 | 2.62 | 7.2 | 92.7 | 0.1 | -4.11 | 0.71 | 0.86 | 3.45 | 3.1 | 0.005 | 0.64 | 0.0 | 0.03 | 23.74 | 0.01 | 2.116 | 9.23 | 4.84 | 7.6 | 92.2 | 0.2 | -1.57 | 1.24 | 0.72 | 0.88 | 3.27 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6o81 | 0649 | 2024-03-22 | 2019-03-08 | 3.21 | 3.63 | — | 3.5 | 0.004 | 0.71 | 0.0 | 0.14 | 12.34 | 0.01 | 2.285 | 4.56 | 0.34 | 4.5 | 95.5 | 0.0 | -4.06 | 0.69 | 0.65 | 0.06 | 3.5 | 0.008 | 0.80 | 0.0 | 0.05 | 14.84 | 0.00 | 2.038 | 11.58 | 3.93 | 7.4 | 92.5 | 0.0 | -0.48 | 1.10 | 0.76 | 0.86 | 2.70 | 33693 | 4949 | 17 | 0 | 29 | 0 | 0 | logfile |
✔ | 6X6L | 22077 | 2024-03-24 | 2020-05-28 | 3.0 | 3.21 | — | 3.1 | 0.007 | 0.78 | 0.0 | 0.05 | 17.97 | 0.01 | 2.267 | 11.62 | 10.29 | 3.6 | 96.4 | 0.0 | -3.79 | 0.77 | 0.84 | 2.57 | 3.2 | 0.005 | 0.70 | 0.0 | 0.04 | 18.63 | 0.00 | 2.081 | 18.16 | 5.90 | 4.4 | 95.6 | 0.0 | -0.37 | 1.55 | 0.78 | 0.85 | 1.83 | 40613 | 5083 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQM | 11368 | 2024-03-17 | 2020-07-10 | 3.29 | 3.42 | — | 3.3 | 0.009 | 0.86 | 0.0 | 0.05 | 15.95 | 0.00 | 1.787 | 12.43 | 0.00 | 8.1 | 91.9 | 0.0 | -1.08 | 0.73 | 0.82 | 2.58 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 16.20 | 0.00 | 1.782 | 8.67 | 0.89 | 3.5 | 96.5 | 0.0 | 0.47 | 0.39 | 0.71 | 0.82 | 2.05 | 80462 | 5155 | 42 | 0 | 16 | 17 | 40460 | logfile |
✔ | 3J6Q | 5926 | 2024-03-24 | 2014-03-20 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.16 | 0.0 | 0.06 | 10.65 | 0.01 | 1.279 | 19.23 | 0.64 | 11.7 | 84.1 | 4.2 | -4.60 | 0.46 | 0.59 | 1.31 | 4.0 | 0.004 | 0.87 | 0.0 | 0.05 | 15.36 | 0.01 | 2.054 | 11.61 | 3.76 | 11.3 | 88.1 | 0.6 | -2.84 | 2.91 | 0.55 | 0.75 | 1.58 | 42575 | 5300 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TLZ | 25991 | 2024-03-10 | 2022-01-19 | 3.3 | 3.47 | 3.24 | 3.4 | 0.011 | 1.30 | 0.0 | 0.08 | 9.09 | 0.01 | 2.581 | 0.87 | 0.31 | 2.8 | 97.2 | 0.0 | 1.02 | 0.68 | 0.81 | 5.51 | 3.4 | 0.006 | 0.70 | 0.0 | 0.05 | 12.25 | 0.00 | 2.297 | 4.51 | 0.94 | 4.6 | 95.4 | 0.0 | 0.55 | 1.00 | 0.68 | 0.87 | 5.92 | 3621 | 475 | 3 | 0 | 6 | 0 | 0 | logfile |
✘ | 8FU6 | 29453 | 2024-03-11 | 2023-01-16 | 2.9 | 3.13 | 2.94 | 3.2 | 0.002 | 0.60 | 0.0 | 0.04 | 12.46 | 0.00 | 2.199 | 3.83 | 0.00 | 2.6 | 97.4 | 0.0 | 0.07 | 0.58 | 0.80 | 3.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8834 | 1112 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YKD | 33891 | 2024-03-14 | 2022-07-22 | 2.81 | 3.29 | 2.94 | 3.2 | 0.009 | 0.86 | 0.0 | 0.06 | 14.19 | 0.00 | 2.118 | 15.46 | 0.10 | 5.0 | 95.0 | 0.0 | -0.18 | 0.70 | 0.83 | 4.27 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 15.02 | 0.00 | 2.181 | 9.55 | 2.29 | 3.7 | 96.3 | 0.0 | 0.75 | 0.92 | 0.67 | 0.84 | 3.24 | 8965 | 1133 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 7SoD | 25267 | 2024-03-10 | 2021-10-29 | 3.2 | 3.43 | 3.21 | 3.4 | 0.011 | 1.24 | 0.0 | 0.08 | 9.17 | 0.01 | 2.129 | 0.40 | 0.49 | 2.4 | 97.6 | 0.0 | 1.01 | 0.70 | 0.86 | 5.20 | 3.4 | 0.005 | 0.59 | 0.0 | 0.05 | 12.44 | 0.00 | 2.288 | 4.13 | 0.74 | 3.3 | 96.7 | 0.0 | 0.88 | 1.53 | 0.69 | 0.91 | 5.54 | 3830 | 473 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 7XCi | 33121 | 2024-03-15 | 2022-03-24 | 3.2 | 3.43 | 3.23 | 3.5 | 0.009 | 0.75 | 0.0 | 0.04 | 13.67 | 0.01 | 2.000 | 6.88 | 0.14 | 3.3 | 96.4 | 0.3 | 0.57 | 0.68 | 0.81 | 2.87 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.68 | 0.00 | 2.168 | 6.26 | 1.29 | 3.6 | 96.3 | 0.1 | 1.21 | 1.02 | 0.68 | 0.84 | 2.71 | 6547 | 791 | 5 | 0 | 9 | 0 | 0 | logfile |
✔ | 7WWJ | 32867 | 2024-03-20 | 2022-02-13 | 3.5 | 4.15 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.05 | 13.50 | 0.00 | 2.202 | 8.64 | 0.00 | 3.2 | 96.8 | 0.0 | 0.07 | 0.83 | 0.87 | 2.59 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 14.65 | 0.00 | 2.180 | 8.00 | 1.43 | 3.4 | 96.6 | 0.0 | 0.27 | 0.91 | 0.82 | 0.86 | 2.26 | 26915 | 3367 | 24 | 0 | 43 | 0 | 0 | logfile |