Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JZZ	22585	2023-07-11	2020-09-02	3.2	3.30	—	3.3	0.010	0.98	0.0	0.05	16.10	0.01	2.209	6.01	0.61	7.1	92.9	0.0	-3.65	0.81	0.86	3.19	3.3	0.005	0.66	0.0	0.04	17.00	0.00	2.111	11.38	0.48	6.9	93.1	0.0	-0.50	0.44	0.80	0.87	2.67	24197	2978	12	61	0	0	0	logfile
✔	6KA4	9954	2023-07-08	2019-06-20	3.4	3.49	—	3.4	0.006	0.82	0.0	0.05	13.68	0.01	2.076	15.29	0.00	5.0	95.0	0.0	-0.10	0.77	0.83	1.80	3.4	0.003	0.58	0.0	0.04	15.91	0.00	2.155	8.57	0.15	3.6	96.4	0.0	1.28	0.49	0.79	0.85	1.21	17500	2136	4	0	0	0	0	logfile
✔	8EXS	28661	2023-07-05	2022-10-25	4.3	3.73	4.19	3.8	0.020	1.72	0.0	0.10	10.18	0.01	1.722	4.78	0.58	3.4	96.6	0.0	0.10	0.55	0.48	—	3.7	0.003	0.66	0.0	0.04	12.86	0.00	2.054	16.08	0.00	4.7	95.3	0.0	0.31	2.12	0.63	0.65	—	9320	1112	4	0	2	0	0	logfile
✔	6MPB	9188	2023-07-05	2018-10-05	3.84	4.03	4.02	4.0	0.005	1.09	0.0	0.06	10.52	0.01	2.338	3.82	0.00	8.9	91.1	0.0	-5.90	0.71	0.78	2.00	4.0	0.003	0.87	0.0	0.04	15.43	0.00	2.137	12.04	0.77	6.9	93.1	0.0	-0.16	1.51	0.72	0.82	2.03	9969	1341	6	0	3	0	0	logfile
✔	6V03	20968	2023-07-06	2019-11-18	3.3	3.42	3.25	3.4	0.014	0.67	0.0	0.05	13.49	0.00	2.234	7.76	0.79	6.1	93.9	0.0	-4.30	0.73	0.82	3.39	3.4	0.004	0.63	0.0	0.05	14.76	0.00	2.093	7.67	1.00	4.9	95.1	0.0	-1.34	0.33	0.73	0.81	2.99	12808	1535	10	0	10	0	0	logfile
✔	8D64	27216	2023-07-06	2022-06-06	3.14	3.25	3.11	3.2	0.007	0.81	0.0	0.06	13.69	0.01	2.275	7.13	0.00	6.6	93.4	0.0	-3.61	0.72	0.84	3.27	3.2	0.005	0.65	0.0	0.05	15.07	0.00	2.198	6.33	0.58	6.2	93.8	0.0	-0.53	0.37	0.73	0.87	3.23	12545	1540	10	0	0	0	0	logfile
✔	7A08	11601	2023-07-07	2020-08-07	3.11	3.18	—	3.2	0.006	0.67	0.0	0.04	26.14	0.00	1.939	10.07	0.22	5.3	94.7	0.0	-2.39	0.73	0.80	3.00	3.2	0.003	0.59	0.0	0.04	26.70	0.00	2.190	8.25	0.33	2.9	97.1	0.0	0.46	0.37	0.73	0.81	1.82	13969	1070	12	263	1	0	0	logfile
✔	7T3J	25660	2023-07-12	2021-12-08	3.2	3.05	—	3.2	0.004	0.74	0.0	0.05	16.17	0.01	2.241	6.11	0.58	4.9	95.1	0.0	-1.91	0.87	0.81	1.94	3.2	0.003	0.54	0.0	0.04	16.37	0.00	2.130	11.88	0.19	5.1	94.9	0.0	0.20	0.31	0.88	0.83	1.87	27076	3349	12	61	0	0	0	logfile
✔	7EG0	31103	2023-07-07	2021-03-23	3.4	3.09	—	3.3	0.009	0.78	0.0	0.05	14.94	0.00	1.975	20.60	0.12	13.9	86.0	0.1	-2.98	0.74	0.79	2.89	3.3	0.003	0.59	0.0	0.04	16.58	0.00	1.968	8.17	0.24	9.7	90.3	0.0	-0.26	1.31	0.77	0.83	2.68	15246	1878	8	0	8	0	0	logfile
✔	7W0C	32238	2023-07-07	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.63	0.0	0.04	15.18	0.00	2.147	16.00	0.15	4.3	95.6	0.1	-0.03	0.46	0.86	0.74	0.26	13663	1492	5	72	2	0	0	logfile
✔	6PT0	20470	2023-07-05	2019-07-14	3.2	3.63	—	3.5	0.006	0.89	0.0	0.06	9.77	0.01	2.222	5.12	0.00	2.8	97.2	0.0	-2.48	0.67	0.75	1.99	3.4	0.003	0.66	0.0	0.04	14.16	0.00	2.138	13.11	0.00	3.1	96.9	0.0	0.37	1.69	0.70	0.81	1.85	10232	1284	6	0	9	0	0	logfile
✔	6WHC	21671	2023-07-04	2020-04-07	3.4	3.86	3.36	3.7	0.004	0.79	0.0	0.05	14.51	0.01	2.238	6.38	0.00	4.0	96.0	0.0	-4.67	0.83	0.82	1.97	3.7	0.002	0.64	0.0	0.04	15.81	0.00	2.162	10.54	0.44	3.1	96.9	0.0	-0.46	1.01	0.82	0.83	1.72	8709	1126	6	0	0	0	0	logfile
✔	6NJP	9391	2023-07-09	2019-01-03	3.29	3.37	—	3.3	0.009	1.17	0.0	0.07	11.57	0.01	1.276	6.11	0.67	6.4	93.6	0.0	-4.04	0.81	0.83	3.41	3.3	0.003	0.67	0.0	0.04	14.63	0.00	0.782	8.81	0.33	4.0	96.0	0.0	-0.93	1.16	0.82	0.85	2.58	19607	2530	15	0	12	21	0	logfile
✔	7ZDJ	14651	2023-07-07	2022-03-29	3.25	3.36	—	3.3	0.005	0.77	0.0	1.03	16.21	0.01	2.195	4.40	0.27	2.8	97.2	0.0	-0.38	0.92	0.91	2.70	3.3	0.008	1.56	0.0	0.31	16.28	0.00	2.129	6.78	0.17	2.7	97.3	0.0	1.19	0.27	0.91	0.89	2.52	65812	8160	55	0	16	0	0	logfile
✔	6U5o	20651	2023-07-12	2019-08-28	3.7	3.81	—	3.8	0.005	0.78	0.0	0.04	14.70	0.01	2.093	5.81	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.004	0.65	0.0	0.04	16.90	0.00	1.877	10.11	0.21	8.1	91.9	0.0	-1.12	1.52	0.66	0.79	2.07	26316	1623	5	0	0	0	13339	logfile
✘	6R10	4703	2023-07-17	2019-03-13	4.3	4.31	—	4.2	0.007	0.96	0.0	0.06	9.71	0.01	2.155	5.28	0.11	7.6	92.4	0.0	-3.74	0.84	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38522	5842	28	0	3	0	0	logfile
✔	7F0J	31399	2023-07-06	2021-06-04	2.9	2.91	2.89	2.9	0.002	0.54	0.0	0.04	13.59	0.01	2.281	9.77	0.00	6.3	93.7	0.0	0.67	0.59	0.73	1.26	3.0	0.003	0.60	0.0	0.04	17.04	0.01	2.223	9.41	1.73	6.5	93.5	0.0	1.03	0.61	0.61	0.78	1.48	12424	1544	8	0	4	0	0	logfile
✔	6GYU	0097	2023-07-09	2018-07-02	3.0	3.35	—	3.3	0.005	0.94	0.0	0.05	10.80	0.01	1.349	6.02	0.74	6.4	93.4	0.3	-4.30	0.70	0.73	3.36	3.2	0.003	0.70	0.0	0.04	15.36	0.00	2.139	11.13	2.06	5.9	94.1	0.0	0.03	1.71	0.79	0.84	2.51	18159	2193	6	0	2	0	0	logfile
✔	6QD0	4515	2023-07-10	2018-12-31	4.5	4.65	5.24	4.6	0.009	1.03	0.0	0.05	9.68	0.01	2.001	9.56	0.00	14.2	85.8	0.0	-4.94	0.56	0.71	—	4.6	0.004	0.70	0.0	0.04	11.08	0.01	1.881	15.41	0.00	9.8	90.2	0.0	-1.77	1.19	0.56	0.72	—	21746	1420	5	0	2	0	11100	logfile
✔	7RTF	24681	2023-07-07	2021-08-13	2.9	2.86	—	3.0	0.009	1.35	0.0	0.05	19.00	0.01	2.280	5.21	1.41	7.2	92.8	0.0	-0.52	0.67	0.80	2.92	3.0	0.003	0.62	0.0	0.04	16.75	0.00	2.187	6.75	1.78	5.4	94.6	0.0	1.44	0.33	0.68	0.82	2.19	13460	1580	8	0	52	0	0	logfile

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