Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LKH	4068	2023-07-17	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	87.12	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	8.8	0.003	0.79	0.0	0.04	15.60	0.00	2.128	23.73	0.29	6.5	93.5	0.0	-0.63	2.08	0.50	0.55	0.41	37345	4740	5	0	0	0	0	logfile
✔	8JJ5	36340	2023-07-07	2023-05-29	3.5	3.74	3.51	3.7	0.021	2.18	39.0	0.19	15.54	0.02	2.397	1.75	1.22	8.9	91.0	0.1	-2.93	0.38	0.61	1.08	3.7	0.003	0.71	0.0	0.04	16.25	0.00	2.080	16.29	0.41	6.1	93.9	0.0	-0.01	1.07	0.40	0.64	0.81	13594	866	10	0	14	0	6679	logfile
✔	8H9R	34578	2023-07-03	2022-10-25	3.97	4.28	4.04	4.0	0.006	0.79	0.0	0.05	15.25	0.00	2.244	16.26	0.00	6.1	93.9	0.0	-1.99	0.38	0.80	0.71	4.0	0.003	0.72	0.0	0.04	17.99	0.00	2.273	14.32	1.13	4.1	95.9	0.0	2.13	1.32	0.38	0.79	0.36	3381	421	3	0	0	0	0	logfile
✔	7YK5	33887	2023-07-18	2022-07-21	2.0	1.66	—	1.9	0.014	1.49	0.0	0.09	17.33	0.00	2.157	4.91	7.75	4.0	96.0	0.0	-2.45	0.38	0.48	6.60	1.9	0.004	0.74	0.0	0.05	16.52	0.01	2.340	1.95	1.52	2.7	97.3	0.0	0.05	0.46	0.81	0.84	6.66	39948	5064	36	0	8	0	0	logfile
✔	7ZSD	14930	2023-07-03	2022-05-06	3.29	3.62	3.56	3.6	0.003	0.60	0.0	0.05	14.29	0.00	2.226	9.82	0.00	7.0	93.0	0.0	-0.09	0.38	0.74	2.01	3.6	0.003	0.66	0.0	0.05	14.79	0.00	2.257	12.46	0.90	7.0	93.0	0.0	-0.57	0.39	0.39	0.78	1.13	2120	261	3	0	2	0	0	logfile
✔	7TQU	26072	2023-07-10	2022-01-27	3.8	3.89	3.57	3.8	0.021	1.81	0.0	0.10	9.74	0.01	2.375	0.92	0.00	2.1	97.9	0.0	0.71	0.38	0.84	3.42	3.8	0.005	0.70	0.0	0.05	15.22	0.00	2.091	12.13	0.72	3.9	96.1	0.0	-0.65	0.82	0.36	0.84	2.74	20891	2544	17	0	217	0	0	logfile
✔	6oEH	20020	2023-07-15	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.28	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	7FG2	31574	2023-07-05	2021-07-25	4.4	3.87	—	3.9	0.007	1.13	0.0	0.05	14.43	0.01	2.053	32.64	0.19	17.8	81.7	0.4	-3.95	0.38	0.65	—	3.9	0.004	0.76	0.0	0.05	14.45	0.00	2.118	18.43	0.00	13.3	86.4	0.3	-2.81	0.77	0.37	0.64	—	9342	1202	2	0	0	0	0	logfile
✔	7WQ3	32698	2023-07-05	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	8.04	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.003	0.62	0.0	0.04	15.73	0.00	2.165	7.11	2.94	2.4	97.6	0.0	0.81	1.89	0.64	0.82	3.09	9209	1160	7	0	5	0	0	logfile
✘	7CQ7	30438	2023-07-07	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.33	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13810	1766	8	0	9	0	0	logfile
✔	8DRQ	27681	2023-07-03	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7DRT	30827	2023-07-04	2020-12-29	2.2	2.32	—	2.3	0.011	1.32	9.0	0.09	13.05	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.69	0.0	0.04	17.16	0.01	2.248	10.87	5.31	6.3	93.6	0.1	-0.26	1.11	0.64	0.77	2.68	6849	830	7	0	7	10	0	logfile
✔	7JGF	22325	2023-07-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6QPi	4614	2023-07-03	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	7FFN	31569	2023-07-04	2021-07-23	3.0	3.15	—	3.1	0.007	0.95	0.0	0.06	9.73	0.01	1.924	5.72	0.53	6.6	93.3	0.1	-3.00	0.39	0.80	3.34	3.1	0.004	0.70	0.0	0.05	14.57	0.01	2.170	8.25	2.55	5.8	94.2	0.0	-0.56	2.02	0.41	0.88	3.17	8589	1112	6	0	1	0	0	logfile
✔	6DU8	8912	2023-07-06	2018-06-20	3.11	3.84	—	3.8	0.007	1.14	0.0	0.08	12.57	0.01	2.046	7.99	0.89	8.8	91.2	0.0	-4.81	0.39	0.59	3.01	3.8	0.004	0.82	0.0	0.05	15.41	0.00	2.067	12.36	0.07	9.7	90.3	0.0	-1.96	0.58	0.41	0.62	2.19	13380	1684	8	0	4	0	0	logfile
✔	8GWE	34310	2023-07-10	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.89	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	6S6L	10103	2023-07-06	2019-07-03	3.1	2.99	2.95	2.9	0.014	1.12	0.0	0.07	9.31	0.01	2.263	5.39	0.16	5.3	94.7	0.0	-2.85	0.39	0.65	3.67	2.9	0.002	0.59	0.0	0.04	12.12	0.01	2.158	8.90	0.24	3.5	96.5	0.0	-0.82	0.55	0.40	0.66	2.99	11587	1510	3	0	0	0	0	logfile
✔	6YAM	10761	2023-07-07	2020-03-12	3.6	3.47	—	3.5	0.021	2.06	55.0	0.12	15.03	0.02	0.634	17.64	3.01	10.8	85.2	4.0	-4.49	0.39	0.52	0.80	3.4	0.003	0.74	0.0	0.04	16.51	0.00	2.048	11.35	0.48	9.5	90.2	0.3	-1.76	1.54	0.45	0.63	1.12	118536	9811	51	1863	5	0	0	logfile
✔	7MDX	23783	2023-07-05	2021-04-06	3.8	4.16	—	4.1	0.004	0.70	1.0	0.05	15.48	0.01	2.228	10.45	0.10	8.4	91.6	0.0	-1.27	0.39	0.72	0.93	4.1	0.003	0.78	0.0	0.05	17.54	0.00	2.075	13.98	0.59	9.2	90.8	0.1	-1.35	0.51	0.39	0.72	0.68	9513	1234	5	0	4	0	0	logfile

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