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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YRG | 10889 | 2024-03-18 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.61 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.8 | 0.003 | 0.73 | 0.0 | 0.04 | 12.90 | 0.00 | 2.145 | 14.98 | 0.00 | 10.1 | 89.7 | 0.1 | -1.36 | 3.44 | 0.75 | 0.53 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G2U | 29681 | 2024-03-19 | 2023-02-06 | 3.0 | 2.24 | — | 3.2 | 0.004 | 0.85 | 0.0 | 0.04 | 23.51 | 0.01 | 2.144 | 4.34 | 0.00 | 5.2 | 94.8 | 0.1 | -1.95 | 0.46 | 0.32 | 0.25 | 3.0 | 0.006 | 0.67 | 0.0 | 0.04 | 23.44 | 0.01 | 1.936 | 9.34 | 3.74 | 7.1 | 92.9 | 0.1 | -0.81 | 2.69 | 0.86 | 0.88 | 2.82 | 140855 | 5496 | 51 | 4559 | 0 | 0 | 0 | logfile |
✔ | 8ENQ | 28276 | 2024-03-10 | 2022-09-30 | 3.6 | 3.97 | 3.73 | 4.4 | 0.004 | 0.77 | 0.0 | 0.05 | 13.93 | 0.00 | 2.257 | 14.40 | 0.00 | 0.3 | 99.7 | 0.0 | 1.45 | 0.35 | 0.32 | 1.15 | 4.2 | 0.007 | 1.22 | 0.0 | 0.05 | 16.63 | 0.01 | 2.036 | 40.94 | 3.57 | 19.7 | 80.3 | 0.0 | -4.84 | 2.02 | 0.47 | 0.54 | 3.33 | 5593 | 777 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8F7J | 28905 | 2024-03-10 | 2022-11-18 | 4.32 | 4.45 | 4.63 | 8.9 | 0.005 | 0.92 | 0.0 | 0.05 | 15.44 | 0.01 | 2.282 | 15.12 | 0.26 | 5.7 | 94.3 | 0.0 | -3.18 | 0.38 | 0.32 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 14.09 | 0.01 | 2.143 | 18.06 | 0.00 | 5.7 | 94.3 | 0.0 | -2.85 | 2.92 | 0.44 | 0.43 | — | 3321 | 407 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FDB | 31539 | 2024-03-12 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.61 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.004 | 0.86 | 0.0 | 0.05 | 13.92 | 0.01 | 2.005 | 28.55 | 0.00 | 6.4 | 93.6 | 0.0 | -1.56 | 2.61 | 0.77 | 0.66 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2024-03-10 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 8.08 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 0.99 | 0.0 | 0.02 | 6.66 | 0.00 | 2.225 | 16.71 | 0.00 | 11.5 | 88.3 | 0.2 | -3.14 | 5.69 | 0.84 | 0.64 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2024-03-14 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.36 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.004 | 0.81 | 0.0 | 0.04 | 12.06 | 0.00 | 2.092 | 22.70 | 0.00 | 6.5 | 93.4 | 0.1 | -0.69 | 2.09 | 0.46 | 0.57 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RWE | 10038 | 2024-03-10 | 2019-06-04 | 3.0 | 3.12 | — | 3.7 | 0.009 | 1.02 | 1.0 | 0.06 | 13.23 | 0.01 | 1.975 | 6.33 | 0.73 | 7.4 | 92.5 | 0.1 | -4.84 | 0.44 | 0.32 | 0.00 | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 18.19 | 0.00 | 2.024 | 13.69 | 2.38 | 5.6 | 94.4 | 0.0 | -1.37 | 2.33 | 0.74 | 0.77 | 1.46 | 53719 | 6454 | 26 | 95 | 8 | 0 | 0 | logfile |
✔ | 7X25 | 32958 | 2024-03-25 | 2022-02-25 | 2.49 | 2.74 | — | 2.8 | 0.008 | 1.08 | 2.0 | 0.06 | 17.29 | 0.00 | 1.050 | 8.51 | 9.22 | 10.3 | 88.6 | 1.1 | -1.98 | 0.59 | 0.32 | 0.12 | 1.8 | 0.006 | 0.91 | 1.0 | 0.05 | 17.06 | 0.01 | 2.044 | 17.10 | 2.59 | 9.2 | 90.6 | 0.2 | -1.87 | 1.82 | 0.83 | 0.76 | 1.81 | 37110 | 4844 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DWi | 27755 | 2024-03-10 | 2022-08-01 | 3.4 | 4.06 | 3.58 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.02 | 0.01 | 2.258 | 7.44 | 0.00 | 5.0 | 95.0 | 0.0 | 0.29 | 0.28 | 0.33 | -0.40 | 4.0 | 0.003 | 0.75 | 0.0 | 0.04 | 16.44 | 0.01 | 2.119 | 10.92 | 2.23 | 4.5 | 95.5 | 0.0 | -0.30 | 1.77 | 0.47 | 0.72 | 2.55 | 3192 | 424 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPJ | 14855 | 2024-03-19 | 2022-04-27 | 3.81 | 3.24 | 3.86 | 6.5 | 0.004 | 0.86 | 0.0 | 0.05 | 15.40 | 0.01 | 2.159 | 2.94 | 0.67 | 3.3 | 96.7 | 0.0 | 0.22 | 0.54 | 0.33 | 0.15 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.29 | 0.01 | 1.980 | 12.22 | 2.33 | 4.5 | 95.5 | 0.0 | 0.29 | 1.48 | 0.64 | 0.57 | 0.40 | 23479 | 1355 | 3 | 55 | 0 | 0 | 11508 | logfile |
✔ | 8UUZ | 42602 | 2024-03-10 | 2023-11-02 | 3.77 | 4.50 | 3.78 | 8.8 | 0.003 | 0.73 | 0.0 | 0.04 | 13.06 | 0.00 | 2.213 | 38.18 | 12.61 | 6.6 | 93.4 | 0.0 | -1.81 | 0.61 | 0.33 | 0.27 | 8.5 | 0.003 | 0.91 | 0.0 | 0.05 | 16.74 | 0.01 | 2.249 | 38.64 | 6.52 | 8.0 | 92.0 | 0.0 | -1.98 | 1.31 | 0.75 | 0.58 | 0.64 | 2258 | 300 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiF | 26544 | 2024-03-12 | 2022-03-29 | 4.6 | 5.63 | 4.34 | 6.7 | 0.004 | 0.69 | 0.0 | 0.05 | 13.63 | 0.01 | 0.850 | 9.76 | 0.06 | 1.9 | 98.0 | 0.1 | 0.62 | 0.48 | 0.33 | — | 6.8 | 0.003 | 0.80 | 0.0 | 0.05 | 13.37 | 0.01 | 2.022 | 21.04 | 0.00 | 3.7 | 96.3 | 0.0 | -0.31 | 1.25 | 0.61 | 0.63 | — | 63137 | 7857 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoT | 32658 | 2024-03-17 | 2022-01-22 | 3.73 | 4.26 | — | 3.8 | 0.010 | 1.69 | 284.0 | 0.10 | 15.82 | 0.01 | 1.016 | 24.03 | 4.41 | 9.4 | 88.4 | 2.2 | -3.07 | 0.49 | 0.33 | 0.06 | 3.9 | 0.003 | 0.82 | 0.0 | 0.04 | 16.50 | 0.00 | 2.072 | 17.00 | 2.33 | 8.0 | 91.7 | 0.3 | -0.70 | 1.09 | 0.55 | 0.43 | 0.17 | 133827 | 17285 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2024-03-15 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.59 | 0.0 | 0.04 | 14.31 | 0.00 | 2.135 | 7.57 | 0.00 | 8.4 | 91.6 | 0.0 | -1.96 | 1.18 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 8TFK | 41232 | 2024-03-17 | 2023-07-11 | 2.66 | 2.90 | 2.75 | 3.3 | 0.006 | 0.81 | 0.0 | 0.10 | 18.76 | 0.00 | 1.729 | 6.79 | 2.68 | 3.5 | 96.5 | 0.0 | -0.92 | 0.37 | 0.33 | 0.08 | 2.9 | 0.005 | 0.78 | 0.0 | 0.10 | 18.13 | 0.00 | 1.777 | 5.15 | 2.36 | 3.4 | 96.6 | 0.0 | -0.08 | 1.16 | 0.71 | 0.88 | 3.97 | 81543 | 5280 | 24 | 0 | 60 | 0 | 39601 | logfile |
✔ | 8E5P | 27917 | 2024-03-18 | 2022-08-22 | 4.4 | 9.89 | 6.01 | 8.2 | 0.003 | 0.64 | 0.0 | 0.04 | 11.51 | 0.00 | 1.299 | 26.66 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.61 | 0.33 | — | 8.2 | 0.004 | 0.73 | 0.0 | 0.04 | 12.07 | 0.00 | 1.266 | 23.46 | 0.00 | 3.3 | 96.7 | 0.0 | 0.67 | 1.58 | 0.85 | 0.78 | — | 20038 | 2502 | 13 | 8 | 18 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2024-03-11 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2024-03-22 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.35 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.01 | 0.0 | 0.05 | 10.83 | 0.00 | 2.033 | 24.83 | 0.10 | 16.3 | 83.5 | 0.2 | -2.27 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8REB | 19081 | 2024-03-20 | 2023-12-10 | 3.4 | 3.95 | 3.51 | 4.1 | 0.005 | 0.71 | 0.0 | 0.04 | 19.20 | 0.01 | 2.006 | 10.84 | 0.38 | 6.7 | 93.3 | 0.0 | -0.58 | 0.63 | 0.34 | 0.40 | 3.5 | 0.004 | 0.80 | 0.0 | 0.04 | 19.54 | 0.00 | 1.958 | 18.09 | 1.92 | 6.2 | 93.8 | 0.0 | -0.55 | 5.23 | 0.88 | 0.83 | 1.09 | 28681 | 3638 | 10 | 101 | 3 | 0 | 0 | logfile |