Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJ3	12371	2023-08-20	2021-02-15	4.48	4.72	—	4.6	0.004	0.70	1.0	0.05	13.64	0.00	1.907	8.92	0.38	4.2	95.8	0.0	-0.73	0.57	0.36	—	4.6	0.006	0.81	0.0	0.04	13.81	0.01	1.754	25.13	0.00	8.4	91.6	0.0	-2.08	2.79	0.72	0.62	—	28778	1795	6	23	0	0	13868	logfile
✔	8FEL	29032	2023-08-11	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	5MPD	3534	2023-08-25	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.82	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.81	0.0	0.04	15.26	0.00	2.095	17.29	0.00	6.2	93.6	0.2	-0.71	1.92	0.27	0.60	—	40974	5142	13	0	0	0	0	logfile
✔	8E5L	27914	2023-08-16	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	7XZX	33533	2023-08-15	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	6QG2	4545	2023-08-24	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.68	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.71	0.0	0.04	15.44	0.00	2.134	14.22	0.00	9.9	89.5	0.6	-1.62	1.67	0.70	0.57	—	38664	4961	16	0	0	0	0	logfile
✔	7KQE	22997	2023-08-15	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.55	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile
✔	6UE9	20751	2023-08-15	2019-09-20	2.9	3.89	—	4.2	0.007	1.05	0.0	0.06	13.69	0.01	2.241	3.10	0.32	11.2	88.8	0.0	-3.87	0.59	0.37	0.26	3.6	0.004	1.00	0.0	0.05	15.77	0.01	2.138	12.28	4.31	7.3	92.7	0.0	-1.79	1.79	0.78	0.81	1.76	18227	2475	17	0	12	0	0	logfile
✔	3JAU	6366	2023-08-12	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	7M3L	23656	2023-08-09	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	7Pii	13437	2023-08-12	2021-08-19	2.68	2.39	—	2.7	0.010	0.78	0.0	0.05	28.29	0.00	2.229	8.23	0.31	4.0	96.0	0.0	-0.89	0.51	0.38	3.69	2.6	0.004	0.66	0.0	0.04	29.02	0.00	2.175	7.79	2.33	2.8	97.2	0.0	1.88	0.98	0.81	0.88	3.36	11192	779	12	245	0	0	0	logfile
✔	7W0F	32241	2023-08-13	2021-11-18	4.55	8.43	—	7.5	0.003	0.64	1.0	0.04	14.12	0.00	1.356	21.15	1.19	4.4	94.7	0.8	-0.94	0.71	0.38	—	7.4	0.003	0.66	0.0	0.04	14.18	0.00	2.160	18.40	0.00	5.1	94.9	0.1	-0.71	1.00	0.87	0.70	—	14097	1492	6	94	0	0	0	logfile
✔	7QGH	13955	2023-08-31	2021-12-08	4.48	9.26	—	4.8	0.016	1.62	58.0	0.11	15.10	0.01	0.197	5.44	1.41	8.8	90.2	1.0	-4.05	0.66	0.38	—	4.5	0.006	0.93	1.0	0.05	18.29	0.01	1.254	59.68	0.04	11.4	88.5	0.1	-2.68	2.11	0.85	0.78	—	147973	6046	58	4716	3	9	0	logfile
✔	7DPA	30802	2023-08-22	2020-12-18	3.8	4.83	3.79	3.0	0.006	0.84	0.0	0.05	15.30	0.01	2.038	22.25	0.00	12.3	87.7	0.0	-3.05	0.70	0.39	0.50	3.0	0.003	0.76	0.0	0.04	16.94	0.00	2.083	18.81	0.11	8.1	91.9	0.0	-1.30	1.14	0.89	0.78	0.09	32858	4034	6	0	0	0	0	logfile
✔	5MPE	3535	2023-08-25	2016-12-16	4.5	4.55	—	4.5	0.034	3.32	297.0	0.19	17.16	0.03	1.158	3.96	2.25	5.2	92.6	2.2	-1.86	0.28	0.39	—	4.5	0.004	0.84	0.0	0.04	14.91	0.00	2.004	21.69	0.02	6.0	93.7	0.3	-0.89	2.46	0.36	0.68	—	40974	5142	13	0	0	0	0	logfile
✘	6PV6	20486	2023-08-15	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.47	0.31	11.0	88.9	0.1	-4.72	0.60	0.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	6MWQ	9277	2023-08-17	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.72	0.0	0.04	13.43	0.00	2.152	8.38	1.78	4.1	95.7	0.2	-1.12	1.34	0.78	0.87	1.94	22072	2873	8	0	0	0	0	logfile
✔	7R5R	14334	2023-08-12	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	27.14	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.014	0.90	0.0	0.04	28.54	0.01	2.131	5.12	1.71	3.6	96.4	0.0	1.78	0.94	0.81	0.87	3.25	11625	779	12	266	0	0	0	logfile
✔	5A63	3061	2023-08-11	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	19.07	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.76	0.0	0.04	17.76	0.00	2.217	12.14	1.05	5.5	94.1	0.3	0.06	3.24	0.62	0.82	1.80	10003	1223	13	0	22	0	0	logfile
✔	7K8D	22728	2023-08-12	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.003	0.80	0.0	0.04	13.50	0.01	2.094	15.68	0.00	4.9	95.1	0.0	0.82	1.46	0.41	0.49	—	5529	725	1	0	0	0	0	logfile

• ← previous
• Page 7 of 542
• next →